Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 1.8e-131 472.6 244 100.0
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 8.5e-81 304.3 248 69.4
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 3.2e-80 302.4 249 67.1
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 9.4e-80 300.8 246 68.3
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 3.6e-79 298.9 254 68.9
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 1.8e-78 296.6 247 66.8
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 6.7e-78 294.7 248 66.9
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.5e-77 293.5 251 67.3
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 4.3e-77 292.0 248 66.9
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 2.2e-76 289.7 248 66.5
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 2.8e-76 289.3 245 66.1
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 6.3e-76 288.1 253 66.8
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 6.3e-76 288.1 250 66.4
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 8.2e-76 287.7 245 69.0
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 1.2e-74 283.9 249 64.7
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 1.2e-74 283.9 249 64.7
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 1.5e-74 283.5 251 64.1
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 2.0e-74 283.1 248 66.5
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 7.7e-74 281.2 247 65.2
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 7.7e-74 281.2 250 65.6
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 1.0e-73 280.8 248 65.7
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 1.0e-73 280.8 248 65.3
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 1.3e-73 280.4 248 66.5
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 3.8e-73 278.9 247 64.4
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 8.5e-73 277.7 263 63.5
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 1.4e-72 276.9 255 62.7
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 1.9e-72 276.6 251 64.1
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 2.5e-72 276.2 185 76.2
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 4.2e-72 275.4 249 65.9
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 9.4e-72 274.2 252 64.7
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 9.4e-72 274.2 271 62.0
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 9.4e-72 274.2 250 64.8
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 2.1e-71 273.1 251 63.3
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 1.0e-70 270.8 247 63.6
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 1.8e-70 270.0 246 67.5
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 1.8e-70 270.0 246 63.4
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 3.0e-70 269.2 248 63.3
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 3.9e-70 268.9 246 67.5
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 5.7e-69 265.0 254 62.2
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 4.8e-68 261.9 244 63.9
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 6.3e-68 261.5 208 69.2
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 8.2e-68 261.2 257 61.5
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 8.2e-68 261.2 245 61.6
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 2.4e-67 259.6 250 63.6
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 5.3e-67 258.5 245 62.9
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 7.0e-67 258.1 197 72.1
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 9.1e-67 257.7 277 59.2
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 1.2e-66 257.3 248 62.9
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 2.6e-66 256.1 259 60.2
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 4.5e-66 255.4 274 56.9
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 4.5e-66 255.4 252 61.9
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 7.7e-66 254.6 244 61.9
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 1.7e-65 253.4 251 59.4
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 2.2e-65 253.1 257 60.3
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 6.5e-65 251.5 248 61.7
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 1.4e-64 250.4 247 61.9
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 2.5e-64 249.6 244 60.7
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 3.2e-64 249.2 248 60.1
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 4.2e-64 248.8 247 61.9
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 4.2e-64 248.8 251 59.8
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 5.5e-64 248.4 247 61.9
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 1.6e-63 246.9 259 58.3
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 3.6e-63 245.7 246 60.2
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 1.0e-62 244.2 259 59.5
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 1.0e-62 244.2 249 60.6
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 1.8e-62 243.4 247 61.9
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 2.3e-62 243.0 248 59.7
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 3.9e-62 242.3 247 59.5
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 3.9e-62 242.3 248 58.9
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 5.2e-62 241.9 209 63.2
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 8.8e-62 241.1 244 59.4
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 2.0e-61 240.0 182 71.4
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 3.3e-61 239.2 250 59.6
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 1.3e-60 237.3 247 59.1
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 1.7e-60 236.9 257 56.4
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 2.8e-60 236.1 232 61.6
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 6.3e-60 235.0 284 56.3
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 8.2e-60 234.6 293 53.9
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 1.1e-59 234.2 247 58.3
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 1.4e-59 233.8 247 58.7
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 1.8e-59 233.4 247 58.7
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 2.4e-59 233.0 248 58.1
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 1.6e-58 230.3 249 59.0
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 4.5e-58 228.8 263 56.3
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 7.7e-58 228.0 252 53.6
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 1.3e-57 227.3 238 58.8
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 1.3e-57 227.3 248 57.7
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 2.2e-57 226.5 248 57.3
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 6.5e-57 224.9 238 59.2
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 6.5e-57 224.9 237 58.6
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 6.5e-57 224.9 235 59.1
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 2.5e-56 223.0 238 58.8
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 5.5e-56 221.9 253 54.2
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 9.4e-56 221.1 238 58.4
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 1.0e-54 217.6 237 59.5
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 2.3e-54 216.5 256 52.0
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 4.0e-54 215.7 245 57.1
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 3.3e-53 212.6 245 53.9
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 4.8e-52 208.8 209 59.3
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 6.3e-52 208.4 233 55.4
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 1.0e-49 201.1 247 53.4
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 1.5e-48 197.2 247 53.0
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 3.2e-48 196.1 134 76.9
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 4.2e-48 195.7 148 73.0
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 5.5e-48 195.3 258 49.2
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 9.4e-48 194.5 148 72.3
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 3.0e-46 189.5 246 51.2
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 7.5e-45 184.9 139 71.9
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 1.7e-44 183.7 136 75.0
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 7.0e-43 178.3 189 55.6
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 1.6e-42 177.2 259 49.4
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.2e-39 167.5 121 75.2
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 1.1e-35 154.5 135 65.2
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 1.8e-35 153.7 262 47.3
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 2.4e-35 153.3 261 41.0
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 1.2e-34 151.0 255 42.4
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 8.6e-33 144.8 245 43.3
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 8.6e-33 144.8 194 51.0
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 5.6e-32 142.1 182 54.4
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 1.2e-31 141.0 176 51.1
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 2.7e-26 123.2 178 50.6
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 6.6e-25 118.6 160 51.9
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 1.1e-24 117.9 182 45.6
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 3.3e-24 116.3 73 79.5
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 2.0e-21 107.1 74 77.0
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 4.4e-21 105.9 134 50.7
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 6.6e-17 92.0 225 35.1
Hma1.2p1_0516F.1_g170490 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 1.1e-16 91.3 125 48.8
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 3.3e-16 89.7 98 54.1
Potri.001G206032 Populus trichocarpa HOM05D005104 ORTHO05D006614 1.4e-14 84.3 194 42.8
arahy.Tifrunner.gnm1.ann1.H2YG1F Arachis hypogaea HOM05D005104 ORTHO05D006614 3.4e-13 79.7 58 69.0
EL10Ac9g21465 Beta vulgaris HOM05D005104 ORTHO05D006614 9.2e-11 71.6 242 32.6
C07p45690 Brassica napus HOM05D005104 ORTHO05D021970 1.6e-10 70.9 122 45.1
BolC6t38485H Brassica oleracea HOM05D005104 ORTHO05D006614 3.5e-10 69.7 125 44.0
C03p52730 Brassica napus HOM05D005104 ORTHO05D021970 6.0e-10 68.9 121 43.8
C09p03790 Brassica napus HOM05D005104 ORTHO05D006614 1.7e-09 67.4 122 43.4
C05p26840 Brassica napus HOM05D005104 ORTHO05D006614 6.6e-09 65.5 106 44.3
A10p06060 Brassica napus HOM05D005104 ORTHO05D006614 2.1e-07 60.5 77 49.4


User provided reference genes

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