Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 2.7e-35 151.4 72 100.0
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 1.9e-33 145.2 72 94.4
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 2.9e-29 131.3 72 86.1
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 9.3e-28 126.3 72 80.6
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 2.1e-27 125.2 67 85.1
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 1.3e-26 122.5 69 81.2
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 1.8e-26 122.1 74 79.7
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 6.7e-26 120.2 70 80.0
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 6.7e-26 120.2 70 81.4
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 1.9e-25 118.6 75 77.3
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.3e-25 117.9 72 76.4
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 4.3e-25 117.5 72 75.0
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 4.3e-25 117.5 73 80.8
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 5.7e-25 117.1 72 73.6
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 9.6e-25 116.3 61 85.2
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 9.6e-25 116.3 74 75.7
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 9.6e-25 116.3 74 75.7
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 9.6e-25 116.3 74 75.7
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 9.6e-25 116.3 73 76.7
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 9.6e-25 116.3 67 77.6
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 1.3e-24 115.9 72 76.4
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 1.6e-24 115.5 71 76.1
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 2.1e-24 115.2 67 79.1
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 2.1e-24 115.2 72 76.4
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 2.8e-24 114.8 61 83.6
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 2.8e-24 114.8 72 73.6
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 2.8e-24 114.8 72 73.6
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 2.8e-24 114.8 72 75.0
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 3.7e-24 114.4 74 75.7
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 4.8e-24 114.0 72 75.0
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 4.8e-24 114.0 71 76.1
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 4.8e-24 114.0 67 76.1
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 4.8e-24 114.0 61 82.0
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 6.2e-24 113.6 72 73.6
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 8.2e-24 113.2 74 71.6
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 8.2e-24 113.2 74 71.6
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 1.1e-23 112.8 72 70.8
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 1.4e-23 112.5 65 78.5
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 1.4e-23 112.5 72 72.2
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 2.4e-23 111.7 73 75.3
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 2.4e-23 111.7 60 81.7
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 4.0e-23 110.9 64 78.1
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 4.0e-23 110.9 64 78.1
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 5.3e-23 110.5 65 76.9
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 5.3e-23 110.5 65 76.9
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 5.3e-23 110.5 65 76.9
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 5.3e-23 110.5 65 76.9
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 6.9e-23 110.2 73 75.3
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 9.0e-23 109.8 73 72.6
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 9.0e-23 109.8 73 72.6
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 9.0e-23 109.8 73 72.6
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 9.0e-23 109.8 73 72.6
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 9.0e-23 109.8 73 72.6
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 9.0e-23 109.8 73 72.6
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 9.0e-23 109.8 72 68.1
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 1.2e-22 109.4 65 76.9
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 1.2e-22 109.4 58 84.5
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 1.2e-22 109.4 58 84.5
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 1.2e-22 109.4 59 81.4
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.5e-22 109.0 73 71.2
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 1.5e-22 109.0 63 74.6
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 2.0e-22 108.6 64 75.0
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 2.0e-22 108.6 73 71.2
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 2.0e-22 108.6 63 74.6
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 2.0e-22 108.6 76 71.1
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 2.0e-22 108.6 65 80.0
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 2.0e-22 108.6 70 67.1
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 2.6e-22 108.2 69 73.9
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 4.5e-22 107.5 64 78.1
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 5.8e-22 107.1 74 67.6
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 5.8e-22 107.1 67 71.6
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 7.6e-22 106.7 57 82.5
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 7.6e-22 106.7 57 82.5
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.0e-21 106.3 73 71.2
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 1.0e-21 106.3 58 79.3
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 1.0e-21 106.3 72 70.8
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 1.3e-21 105.9 62 74.2
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 2.2e-21 105.1 73 67.1
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 6.5e-21 103.6 53 83.0
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 6.5e-21 103.6 62 75.8
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 8.4e-21 103.2 66 72.7
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 8.4e-21 103.2 70 61.4
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 1.1e-20 102.8 62 72.6
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.4e-20 102.4 53 83.0
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 2.5e-20 101.7 62 72.6
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 2.5e-20 101.7 63 74.6
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 4.2e-20 100.9 70 64.3
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 4.2e-20 100.9 70 65.7
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 5.5e-20 100.5 69 71.0
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 7.1e-20 100.1 60 80.0
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 9.3e-20 99.8 71 67.6
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 9.3e-20 99.8 56 80.4
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 1.2e-19 99.4 53 81.1
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.6e-19 99.0 60 75.0
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 2.1e-19 98.6 71 69.0
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 2.1e-19 98.6 71 69.0
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 2.7e-19 98.2 71 67.6
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 3.5e-19 97.8 59 72.9
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 4.6e-19 97.4 54 77.8
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 4.6e-19 97.4 73 65.8
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 7.9e-19 96.7 49 85.7
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 7.9e-19 96.7 72 66.7
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 1.3e-18 95.9 74 64.9
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 1.3e-18 95.9 56 75.0
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 2.3e-18 95.1 62 69.4
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 5.1e-18 94.0 64 68.8
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 5.1e-18 94.0 47 89.4
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 6.7e-18 93.6 47 87.2
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 6.7e-18 93.6 56 76.8
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 9.7e-17 89.7 55 70.9
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 3.7e-16 87.8 47 78.7
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 6.3e-16 87.0 62 66.1
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 1.1e-15 86.3 54 66.7
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 3.1e-15 84.7 46 78.3
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 2.6e-14 81.6 54 64.8
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 3.4e-14 81.3 48 72.9
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 3.8e-13 77.8 59 59.3
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 5.5e-12 73.9 50 62.0
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 1.2e-11 72.8 37 81.1
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 2.1e-11 72.0 49 61.2
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 3.0e-10 68.2 59 47.5
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 6.7e-10 67.0 45 64.4
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 2.2e-08 62.0 30 83.3
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 1.4e-07 59.3 57 54.4
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 1.4e-07 59.3 57 54.4
Nn3g18517 Nelumbo nucifera HOM05D005857 ORTHO05D007193 4.1e-07 57.8 46 71.7
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 1.2e-06 56.2 48 52.1
Zm00001eb341140 Zea mays HOM05D005857 ORTHO05D007193 1.5e-06 55.8 49 59.2
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 2.0e-06 55.5 57 42.1


User provided reference genes

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