Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G162800 Manihot esculenta HOM05D007450 ORTHO05D009377 3.0e-51 204.9 104 100.0
Gohir.A12G207000 Gossypium hirsutum HOM05D007450 ORTHO05D009377 2.0e-39 165.6 107 82.2
Potri.001G138700 Populus trichocarpa HOM05D007450 ORTHO05D009377 8.4e-38 160.2 108 81.5
Duzib205G1651 Durio zibethinus HOM05D007450 ORTHO05D009377 4.2e-37 157.9 105 79.0
Gohir.D12G209400 Gossypium hirsutum HOM05D007450 ORTHO05D009377 6.7e-35 150.6 107 75.7
Cfa012487 Carpinus fangiana HOM05D007450 ORTHO05D009377 1.9e-34 149.1 104 76.9
CiPaw.11G096800 Carya illinoinensis HOM05D007450 ORTHO05D009377 2.1e-33 145.6 105 73.3
Sabra01G0107700 Salix brachista HOM05D007450 ORTHO05D009377 1.8e-32 142.5 88 84.1
Thecc.03G307400 Theobroma cacao HOM05D007450 ORTHO05D009377 1.8e-32 142.5 86 84.9
Medtr5g029660 Medicago truncatula HOM05D007450 ORTHO05D009377 3.1e-32 141.7 108 71.3
CSS0005314 Camellia sinensis var. sinensis HOM05D007450 ORTHO05D009377 4.0e-32 141.4 101 70.3
FvH4_5g22750 Fragaria vesca HOM05D007450 ORTHO05D009377 4.0e-32 141.4 109 72.5
FAN08G0787 Fragaria x ananassa HOM05D007450 ORTHO05D009377 4.0e-32 141.4 108 73.1
FAN18G1197 Fragaria x ananassa HOM05D007450 ORTHO05D009377 4.0e-32 141.4 109 72.5
FAN18G1518 Fragaria x ananassa HOM05D007450 ORTHO05D009377 4.0e-32 141.4 109 72.5
Psat2g138000 Pisum sativum HOM05D007450 ORTHO05D009377 6.9e-32 140.6 108 71.3
Dinv25243 Davidia involucrata HOM05D007450 ORTHO05D009377 1.5e-31 139.4 104 71.2
FAN04G2147 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.5e-31 139.4 109 72.5
Lj2g0017142 Lotus japonicus HOM05D007450 ORTHO05D009377 4.5e-31 137.9 107 69.2
GSVIVG01013568001 Vitis vinifera HOM05D007450 ORTHO05D009377 4.5e-31 137.9 88 80.7
RcHm_v2.0_Chr7g0211351 Rosa chinensis HOM05D007450 ORTHO05D009377 5.8e-31 137.5 109 71.6
FAN13G0277 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.0e-30 136.7 109 70.6
FAN13G1033 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.0e-30 136.7 109 70.6
Dinv28985 Davidia involucrata HOM05D007450 ORTHO05D009377 1.3e-30 136.3 84 79.8
Rhsim07G0130700 Rhododendron simsii HOM05D007450 ORTHO05D009377 4.9e-30 134.4 101 68.3
PGR031G1038 Punica granatum HOM05D007450 ORTHO05D009377 8.4e-30 133.7 104 70.2
Prupe.5G030900 Prunus persica HOM05D007450 ORTHO05D009377 1.1e-29 133.3 109 68.8
Actinidia09178 Actinidia chinensis HOM05D007450 ORTHO05D009377 1.9e-29 132.5 100 66.0
Gorai.008G225000 Gossypium raimondii HOM05D007450 ORTHO05D009377 2.5e-29 132.1 101 71.3
Actinidia14787 Actinidia chinensis HOM05D007450 ORTHO05D009377 4.2e-29 131.3 100 66.0
Ciclev10018330m.g Citrus clementina HOM05D007450 ORTHO05D009377 9.3e-29 130.2 91 73.6
TPR.G8094 Trifolium pratense HOM05D007450 ORTHO05D009377 3.5e-28 128.3 110 65.5
Cc08_g03220 Coffea canephora HOM05D007450 ORTHO05D009377 6.0e-28 127.5 88 73.9
Atru.chr6.1639 Acer truncatum HOM05D007450 ORTHO05D009377 7.9e-28 127.1 109 64.2
Ca_08150_v3 Cicer arietinum L. HOM05D007450 ORTHO05D009377 2.3e-27 125.6 107 66.4
TAR629G3037 Trochodendron aralioides HOM05D007450 ORTHO05D009377 3.0e-27 125.2 114 62.3
CANSAT21G1074 Cannabis sativa HOM05D007450 ORTHO05D009377 3.9e-27 124.8 106 66.0
Glyma.01G015700 Glycine max HOM05D007450 ORTHO05D009377 5.1e-27 124.4 109 63.3
ECA233G1068 Erigeron canadensis HOM05D007450 ORTHO05D009377 1.1e-26 123.2 100 63.0
Nitab4.5_0000353g0070 Nicotiana tabacum HOM05D007450 ORTHO05D009377 1.5e-26 122.9 100 64.0
THA.LOC104798592 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 1.9e-26 122.5 104 63.5
Solyc08g076580.3 Solanum lycopersicum HOM05D007450 ORTHO05D009377 2.5e-26 122.1 99 62.6
Glyma.09G206700 Glycine max HOM05D007450 ORTHO05D009377 3.3e-26 121.7 109 61.5
THA.LOC104808475 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 4.3e-26 121.3 104 62.5
Peaxi162Scf00170g01010 Petunia axillaris HOM05D007450 ORTHO05D009377 5.7e-26 120.9 99 63.6
DCAR_008242 Daucus carota HOM05D007450 ORTHO05D009377 7.4e-26 120.6 84 75.0
CAN.G298.58 Capsicum annuum HOM05D007450 ORTHO05D009377 9.6e-26 120.2 102 62.7
Nitab4.5_0000685g0040 Nicotiana tabacum HOM05D007450 ORTHO05D009377 1.3e-25 119.8 86 69.8
Lsat_1_v5_gn_6_1640 Lactuca sativa HOM05D007450 ORTHO05D009377 1.6e-25 119.4 100 61.0
Peaxi162Scf00170g00915 Petunia axillaris HOM05D007450 ORTHO05D009377 1.6e-25 119.4 101 60.4
Potri.003G095100 Populus trichocarpa HOM05D007450 ORTHO05D009377 1.6e-25 119.4 88 71.6
QL12p004405 Quercus lobata HOM05D007450 ORTHO05D009377 1.6e-25 119.4 93 75.3
Peaxi162Scf00879g00221 Petunia axillaris HOM05D007450 ORTHO05D009377 2.1e-25 119.0 100 62.0
Sed0022287 Sechium edule HOM05D007450 ORTHO05D009377 2.1e-25 119.0 100 66.0
Carub.0001s3064 Capsella rubella HOM05D007450 ORTHO05D009377 3.7e-25 118.2 101 61.4
Lalb_Chr05g0215841 Lupinus albus HOM05D007450 ORTHO05D009377 3.7e-25 118.2 88 71.6
Eucgr.E00251 Eucalyptus grandis HOM05D007450 ORTHO05D009377 4.8e-25 117.9 101 62.4
MD06G1038000 Malus domestica HOM05D007450 ORTHO05D009377 4.8e-25 117.9 109 59.6
Sopen08g025140 Solanum pennellii HOM05D007450 ORTHO05D009377 6.2e-25 117.5 86 68.6
Haze_08178 Corylus avellana HOM05D007450 ORTHO05D009377 8.2e-25 117.1 164 49.4
Thhalv10009436m.g Eutrema salsugineum HOM05D007450 ORTHO05D009377 8.2e-25 117.1 93 63.4
PGSC0003DMG400014800 Solanum tuberosum HOM05D007450 ORTHO05D009377 1.1e-24 116.7 86 67.4
Sp1g27980 Schrenkiella parvula HOM05D007450 ORTHO05D009377 4.1e-24 114.8 93 65.6
vmacro14189 Vaccinium macrocarpon HOM05D007450 ORTHO05D009377 4.1e-24 114.8 84 67.9
AT1G32310 Arabidopsis thaliana HOM05D007450 ORTHO05D009377 9.0e-24 113.6 93 63.4
MELO3C003430.2 Cucumis melo HOM05D007450 ORTHO05D009377 1.2e-23 113.2 95 63.2
HanXRQChr13g0395471 Helianthus annuus HOM05D007450 ORTHO05D009377 3.4e-23 111.7 101 57.4
Aa31LG2G13720 Aethionema arabicum HOM05D007450 ORTHO05D009377 4.5e-23 111.3 101 57.4
CARHR031660 Cardamine hirsuta HOM05D007450 ORTHO05D009377 1.0e-22 110.2 93 61.3
Aqoxy3G02217 Aquilegia oxysepala HOM05D007450 ORTHO05D009377 1.7e-22 109.4 116 54.3
BcaC05g27880 Brassica carinata HOM05D007450 ORTHO05D009377 1.7e-22 109.4 93 61.3
A05p25040 Brassica napus HOM05D007450 ORTHO05D009377 2.2e-22 109.0 93 61.3
Lalb_Chr16g0381181 Lupinus albus HOM05D007450 ORTHO05D009377 2.2e-22 109.0 86 68.6
ClCG09G011730 Citrullus lanatus HOM05D007450 ORTHO05D009377 3.8e-22 108.2 91 59.3
C05p38880 Brassica napus HOM05D007450 ORTHO05D009377 3.2e-21 105.1 94 60.6
BolC5t32629H Brassica oleracea HOM05D007450 ORTHO05D009377 3.2e-21 105.1 94 60.6
PSO782G2764 Papaver somniferum HOM05D007450 ORTHO05D009377 3.2e-21 105.1 115 53.9
BcaB03g13745 Brassica carinata HOM05D007450 ORTHO05D009377 4.2e-21 104.8 93 59.1
VMungo1215G2816 Vigna mungo HOM05D007450 ORTHO05D009377 4.2e-21 104.8 88 64.8
PSO063G4138 Papaver somniferum HOM05D007450 ORTHO05D009377 5.5e-21 104.4 115 52.2
Sed0003049 Sechium edule HOM05D007450 ORTHO05D009377 7.2e-21 104.0 100 56.0
BraA05t21386Z Brassica rapa HOM05D007450 ORTHO05D009377 9.3e-21 103.6 95 57.9
arahy.Tifrunner.gnm1.ann1.UE78BX Arachis hypogaea HOM05D007450 ORTHO05D009377 1.6e-20 102.8 93 61.3
arahy.Tifrunner.gnm1.ann1.XXZI65 Arachis hypogaea HOM05D007450 ORTHO05D009377 1.6e-20 102.8 93 61.3
Phvul.002G138300 Phaseolus vulgaris HOM05D007450 ORTHO05D009377 1.6e-20 102.8 109 56.0
ATR0829G039 Amborella trichopoda HOM05D007450 ORTHO05D009377 1.3e-19 99.8 103 59.2
HPP92_001521 Vanilla planifolia HOM05D007450 ORTHO05D009377 3.0e-19 98.6 100 57.0
MSTRG.1994 Avicennia marina HOM05D007450 ORTHO05D009377 1.5e-18 96.3 70 64.3
SHI36446 Sapria himalayana HOM05D007450 ORTHO05D009377 6.3e-17 90.9 55 76.4
Hund11210 Selenicereus undatus HOM05D007450 ORTHO05D009377 4.1e-16 88.2 88 55.7
CDE11G0326 Ceratophyllum demersum HOM05D007450 ORTHO05D009377 6.9e-16 87.4 87 56.3
Sc01g0007300 Simmondsia chinensis HOM05D007450 ORTHO05D009377 9.0e-16 87.0 127 43.3
AUR62018673 Chenopodium quinoa HOM05D007450 ORTHO05D009377 1.2e-15 86.7 87 55.2
COL.COLO4_16968 Corchorus olitorius HOM05D007450 ORTHO05D009377 2.6e-15 85.5 49 81.6
EL10Ac5g12043 Beta vulgaris HOM05D007450 ORTHO05D009377 1.4e-13 79.7 91 50.5
SalBow1G6923 Salvia bowleyana HOM05D007450 ORTHO05D009377 5.5e-13 77.8 50 70.0
Migut.E00781 Erythranthe guttata HOM05D007450 ORTHO05D009377 2.7e-12 75.5 65 56.9
Os10g0575950 Oryza sativa ssp. japonica HOM05D007450 ORTHO05D009377 5.1e-11 71.2 90 44.4
Zm00001eb024740 Zea mays HOM05D007450 ORTHO05D009377 1.1e-10 70.1 88 46.6
CsaV3_3G048930 Cucumis sativus L. HOM05D007450 ORTHO05D009377 2.2e-09 65.9 40 72.5
CARHR033090 Cardamine hirsuta HOM05D007450 ORTHO05D009377 6.9e-08 60.8 42 66.7


User provided reference genes

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