Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G160966 Manihot esculenta HOM05D004607 ORTHO05D005836 2.2e-76 289.3 193 100.0
Potri.005G101300 Populus trichocarpa HOM05D004607 ORTHO05D005836 7.2e-43 177.9 178 55.1
CiPaw.08G181500 Carya illinoinensis HOM05D004607 ORTHO05D005836 4.7e-42 175.3 176 53.4
Cpa.g.c27001.3 Carica papaya HOM05D004607 ORTHO05D005836 1.4e-41 173.7 177 52.0
Dinv40187 Davidia involucrata HOM05D004607 ORTHO05D005836 1.8e-41 173.3 173 54.9
RcHm_v2.0_Chr2g0097211 Rosa chinensis HOM05D004607 ORTHO05D005836 4.0e-41 172.2 178 51.7
Actinidia17362 Actinidia chinensis HOM05D004607 ORTHO05D005836 6.8e-41 171.4 173 53.2
CANSAT80G1685 Cannabis sativa HOM05D004607 ORTHO05D005836 1.5e-40 170.2 175 49.7
CANSAT80G2088 Cannabis sativa HOM05D004607 ORTHO05D005836 1.5e-40 170.2 175 49.7
MD02G1116800 Malus domestica HOM05D004607 ORTHO05D005836 2.6e-40 169.5 164 51.2
Dinv08165 Davidia involucrata HOM05D004607 ORTHO05D005836 4.4e-40 168.7 173 53.2
CSS0013050 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 1.3e-39 167.2 169 53.3
FAN28G2666 Fragaria x ananassa HOM05D004607 ORTHO05D005836 1.7e-39 166.8 178 50.6
MD02G1117000 Malus domestica HOM05D004607 ORTHO05D005836 2.2e-39 166.4 178 49.4
CSS0035278 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 4.9e-39 165.2 167 53.3
Hma1.2p1_0300F.1_g118020 Hydrangea macrophylla HOM05D004607 ORTHO05D005836 1.8e-38 163.3 176 51.1
Actinidia22900 Actinidia chinensis HOM05D004607 ORTHO05D005836 5.4e-38 161.8 175 51.4
FvH4_1g10350 Fragaria vesca HOM05D004607 ORTHO05D005836 9.1e-38 161.0 174 50.0
CiPaw.07G003100 Carya illinoinensis HOM05D004607 ORTHO05D005836 2.7e-37 159.5 175 47.4
Prupe.7G182100 Prunus persica HOM05D004607 ORTHO05D005836 5.9e-37 158.3 179 50.3
PGR042G1958 Punica granatum HOM05D004607 ORTHO05D005836 6.6e-36 154.8 174 47.1
GSVIVG01026644001 Vitis vinifera HOM05D004607 ORTHO05D005836 8.6e-36 154.5 166 48.8
TWI09G0436 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 1.9e-35 153.3 177 48.6
TWI73G0051 Tripterygium wilfordii HOM05D004607 ORTHO05D005836 2.5e-35 152.9 174 48.9
CAN.G1238.9 Capsicum annuum HOM05D004607 ORTHO05D005836 4.2e-35 152.1 163 49.1
Gorai.010G212400 Gossypium raimondii HOM05D004607 ORTHO05D005836 4.2e-35 152.1 161 48.4
Glyma.09G198400 Glycine max HOM05D004607 ORTHO05D005836 7.2e-35 151.4 177 45.8
CsaV3_3G000280 Cucumis sativus L. HOM05D004607 ORTHO05D005836 1.2e-34 150.6 164 47.0
Solyc02g082710.3 Solanum lycopersicum HOM05D004607 ORTHO05D005836 1.2e-34 150.6 174 47.1
TPR.G21990 Trifolium pratense HOM05D004607 ORTHO05D005836 1.2e-34 150.6 163 62.6
Cc07_g11810 Coffea canephora HOM05D004607 ORTHO05D005836 1.6e-34 150.2 167 48.5
Lalb_Chr05g0229661 Lupinus albus HOM05D004607 ORTHO05D005836 2.8e-34 149.4 178 45.5
Ca_02856_v3 Cicer arietinum L. HOM05D004607 ORTHO05D005836 4.7e-34 148.7 174 44.3
Thhalv10026376m.g Eutrema salsugineum HOM05D004607 ORTHO05D005836 4.7e-34 148.7 164 45.1
Medtr8g073600 Medicago truncatula HOM05D004607 ORTHO05D005836 4.7e-34 148.7 178 45.5
Eucgr.I00568 Eucalyptus grandis HOM05D004607 ORTHO05D005836 6.1e-34 148.3 171 46.2
Sopen02g027460 Solanum pennellii HOM05D004607 ORTHO05D005836 6.1e-34 148.3 174 46.6
Carub.0007s2507 Capsella rubella HOM05D004607 ORTHO05D005836 1.8e-33 146.7 162 46.3
Ciclev10016602m.g Citrus clementina HOM05D004607 ORTHO05D005836 4.0e-33 145.6 158 48.7
Peaxi162Scf01051g00133 Petunia axillaris HOM05D004607 ORTHO05D005836 4.0e-33 145.6 169 47.3
Sopen02g012590 Solanum pennellii HOM05D004607 ORTHO05D005836 4.0e-33 145.6 163 46.0
Lj4g0003075 Lotus japonicus HOM05D004607 ORTHO05D005836 5.2e-33 145.2 164 44.5
Haze_04009 Corylus avellana HOM05D004607 ORTHO05D005836 6.8e-33 144.8 158 50.0
Nitab4.5_0011694g0010 Nicotiana tabacum HOM05D004607 ORTHO05D005836 6.8e-33 144.8 163 47.9
MSTRG.1461 Avicennia marina HOM05D004607 ORTHO05D005836 8.9e-33 144.4 179 48.0
THA.LOC104819160 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 8.9e-33 144.4 174 42.5
CARHR222820 Cardamine hirsuta HOM05D004607 ORTHO05D005836 2.6e-32 142.9 174 44.8
Haze_03657 Corylus avellana HOM05D004607 ORTHO05D005836 5.7e-32 141.7 158 49.4
Haze_03663 Corylus avellana HOM05D004607 ORTHO05D005836 5.7e-32 141.7 158 49.4
FAN26G2101 Fragaria x ananassa HOM05D004607 ORTHO05D005836 5.7e-32 141.7 205 42.0
Nitab4.5_0000467g0060 Nicotiana tabacum HOM05D004607 ORTHO05D005836 5.7e-32 141.7 163 46.0
Solyc02g038815.1 Solanum lycopersicum HOM05D004607 ORTHO05D005836 7.5e-32 141.4 163 44.8
AL7G38550 Arabidopsis lyrata HOM05D004607 ORTHO05D005836 1.7e-31 140.2 162 45.1
Migut.C01149 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.2e-31 139.8 171 45.0
Aa31LG2G12510 Aethionema arabicum HOM05D004607 ORTHO05D005836 2.8e-31 139.4 162 42.6
BraA08t33239Z Brassica rapa HOM05D004607 ORTHO05D005836 4.9e-31 138.7 174 43.1
Sp7g14990 Schrenkiella parvula HOM05D004607 ORTHO05D005836 4.9e-31 138.7 162 43.2
BolC8t48369H Brassica oleracea HOM05D004607 ORTHO05D005836 6.3e-31 138.3 162 43.8
Migut.K01195 Erythranthe guttata HOM05D004607 ORTHO05D005836 6.3e-31 138.3 168 44.6
Glyma.01G158900 Glycine max HOM05D004607 ORTHO05D005836 6.3e-31 138.3 178 45.5
Lalb_Chr09g0324751 Lupinus albus HOM05D004607 ORTHO05D005836 8.3e-31 137.9 178 42.7
Thecc.01G005800 Theobroma cacao HOM05D004607 ORTHO05D005836 8.3e-31 137.9 157 47.1
BolC7t45311H Brassica oleracea HOM05D004607 ORTHO05D005836 1.8e-30 136.7 164 42.7
AT4G16444 Arabidopsis thaliana HOM05D004607 ORTHO05D005836 3.2e-30 136.0 162 43.8
Migut.G00971 Erythranthe guttata HOM05D004607 ORTHO05D005836 3.2e-30 136.0 171 44.4
Lsat_1_v5_gn_3_68061 Lactuca sativa HOM05D004607 ORTHO05D005836 3.2e-30 136.0 172 44.2
FvH4_1g10370 Fragaria vesca HOM05D004607 ORTHO05D005836 5.4e-30 135.2 182 44.5
Phvul.003G269900 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 9.2e-30 134.4 179 45.8
C07p47890 Brassica napus HOM05D004607 ORTHO05D005836 1.6e-29 133.7 165 43.0
THA.LOC104826422 Tarenaya hassleriana HOM05D004607 ORTHO05D005836 1.6e-29 133.7 179 42.5
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.0e-29 133.3 177 44.6
A03p49830 Brassica napus HOM05D004607 ORTHO05D005836 3.5e-29 132.5 166 41.6
BraA03t14078Z Brassica rapa HOM05D004607 ORTHO05D005836 3.5e-29 132.5 166 41.6
HanXRQChr16g0531851 Helianthus annuus HOM05D004607 ORTHO05D005836 3.5e-29 132.5 172 43.6
Glyma.11G085750 Glycine max HOM05D004607 ORTHO05D005836 4.6e-29 132.1 176 43.2
Lalb_Chr05g0214781 Lupinus albus HOM05D004607 ORTHO05D005836 7.8e-29 131.3 178 40.4
vmacro23502 Vaccinium macrocarpon HOM05D004607 ORTHO05D005836 1.1e-27 127.5 155 45.8
Duzib187G1597 Durio zibethinus HOM05D004607 ORTHO05D005836 3.3e-27 125.9 170 43.5
Nn2g14487 Nelumbo nucifera HOM05D004607 ORTHO05D005836 3.3e-27 125.9 176 42.0
A08p12190 Brassica napus HOM05D004607 ORTHO05D005836 7.3e-27 124.8 199 37.7
BcaC07g37988 Brassica carinata HOM05D004607 ORTHO05D005836 1.2e-26 124.0 163 41.1
Phvul.002G116550 Phaseolus vulgaris HOM05D004607 ORTHO05D005836 1.2e-26 124.0 166 42.8
Psat4g104720 Pisum sativum HOM05D004607 ORTHO05D026060 1.2e-26 124.0 153 44.4
Lj2g0013322 Lotus japonicus HOM05D004607 ORTHO05D005836 1.6e-26 123.6 175 40.0
Sabra05G0083700 Salix brachista HOM05D004607 ORTHO05D005836 2.1e-26 123.2 140 49.3
HanXRQChr09g0259831 Helianthus annuus HOM05D004607 ORTHO05D005836 1.0e-25 120.9 170 39.4
ECA246G3880 Erigeron canadensis HOM05D004607 ORTHO05D005836 1.4e-25 120.6 159 41.5
ClCG10G000250 Citrullus lanatus HOM05D004607 ORTHO05D005836 2.3e-25 119.8 145 42.8
Psat0s2561g0240 Pisum sativum HOM05D004607 ORTHO05D005836 8.9e-25 117.9 163 42.3
unitig_26.g9912 Utricularia gibba HOM05D004607 ORTHO05D005836 1.2e-24 117.5 168 40.5
PGSC0003DMG400001520 Solanum tuberosum HOM05D004607 ORTHO05D005836 1.5e-24 117.1 156 42.9
QL06p052929 Quercus lobata HOM05D004607 ORTHO05D005836 4.4e-24 115.5 71 70.4
MD15G1231800 Malus domestica HOM05D004607 ORTHO05D005836 1.7e-23 113.6 71 64.8
Duzib264G0749 Durio zibethinus HOM05D004607 ORTHO05D005836 3.7e-23 112.5 141 44.7
arahy.Tifrunner.gnm1.ann1.322DBQ Arachis hypogaea HOM05D004607 ORTHO05D005836 4.9e-23 112.1 178 36.0
arahy.Tifrunner.gnm1.ann1.WAU4HL Arachis hypogaea HOM05D004607 ORTHO05D005836 4.9e-23 112.1 178 36.0
MBI11_g22240_MAGBIO Magnolia biondii HOM05D004607 ORTHO05D005836 8.3e-23 111.3 174 38.5
Sed0016741 Sechium edule HOM05D004607 ORTHO05D005836 1.4e-22 110.5 130 43.8
TPR.G33861 Trifolium pratense HOM05D004607 ORTHO05D005836 1.4e-22 110.5 164 40.9
TAR628G0874 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.4e-22 110.5 145 40.7
PGSC0003DMG400017476 Solanum tuberosum HOM05D004607 ORTHO05D005836 1.9e-22 110.2 70 65.7
Migut.M00637 Erythranthe guttata HOM05D004607 ORTHO05D005836 2.4e-22 109.8 133 43.6
ATR0807G168 Amborella trichopoda HOM05D004607 ORTHO05D005836 3.2e-22 109.4 165 36.4
PSO761G0125 Papaver somniferum HOM05D004607 ORTHO05D005836 5.4e-22 108.6 162 35.8
SalBow7G2290 Salvia bowleyana HOM05D004607 ORTHO05D005836 7.0e-22 108.2 216 36.1
AUR62031422 Chenopodium quinoa HOM05D004607 ORTHO05D005836 3.5e-21 105.9 149 40.3
Sc16g0000240 Simmondsia chinensis HOM05D004607 ORTHO05D005836 6.0e-21 105.1 149 38.9
PSO210G1290 Papaver somniferum HOM05D004607 ORTHO05D005836 7.8e-21 104.8 162 35.2
SalBow7G0705 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.0e-20 104.4 224 34.4
SalBow7G4137 Salvia bowleyana HOM05D004607 ORTHO05D005836 1.7e-20 103.6 224 34.8
COL.COLO4_13415 Corchorus olitorius HOM05D004607 ORTHO05D005836 2.3e-20 103.2 141 42.6
Zm00001eb320900 Zea mays HOM05D004607 ORTHO05D005836 3.9e-20 102.4 162 34.0
BcaNung00194 Brassica carinata HOM05D004607 ORTHO05D005836 8.6e-20 101.3 162 38.3
CSS0045229 Camellia sinensis var. sinensis HOM05D004607 ORTHO05D005836 2.5e-19 99.8 167 39.5
Lsat_1_v5_gn_8_112021 Lactuca sativa HOM05D000005 ORTHO05D000012 3.3e-19 99.4 139 38.8
Os06g0198700 Oryza sativa ssp. japonica HOM05D004607 ORTHO05D005836 3.3e-19 99.4 162 33.3
EL10Ac3g05419 Beta vulgaris HOM05D004607 ORTHO05D005836 5.6e-19 98.6 150 36.0
AUR62021120 Chenopodium quinoa HOM05D004607 ORTHO05D005836 5.6e-19 98.6 158 38.0
Aqoxy5G01013 Aquilegia oxysepala HOM05D004607 ORTHO05D005836 7.3e-19 98.2 154 37.0
Nitab4.5_0001365g0040 Nicotiana tabacum HOM05D004607 ORTHO05D005836 7.3e-19 98.2 144 39.6
SGA_v2.0_scaffold52G18984 Striga asiatica HOM05D004607 ORTHO05D005836 7.3e-19 98.2 146 38.4
SGA_v2.0_scaffold24G10477 Striga asiatica HOM05D004607 ORTHO05D005836 2.1e-18 96.7 172 33.7
Zm00001eb373950 Zea mays HOM05D004607 ORTHO05D005836 1.4e-17 94.0 163 31.9
Migut.N00197 Erythranthe guttata HOM05D004607 ORTHO05D005836 1.8e-17 93.6 157 36.3
HPP92_002453 Vanilla planifolia HOM05D004607 ORTHO05D005836 3.1e-17 92.8 172 34.9
Peaxi162Scf00580g00027 Petunia axillaris HOM05D004607 ORTHO05D005836 5.2e-17 92.0 163 37.4
Atru.chr8.743 Acer truncatum HOM05D004607 ORTHO05D005836 2.0e-16 90.1 132 39.4
CDE05G3414 Ceratophyllum demersum HOM05D004607 ORTHO05D005836 2.0e-16 90.1 127 37.8
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 4.4e-16 89.0 180 33.3
unitig_749.g13934 Utricularia gibba HOM05D004607 ORTHO05D005836 4.9e-15 85.5 140 37.9
Duzib147G0723 Durio zibethinus HOM05D004607 ORTHO05D005836 1.6e-13 80.5 67 64.2
Rhsim10G0196300 Rhododendron simsii HOM05D004607 ORTHO05D005836 1.3e-12 77.4 70 52.9
CAN.G328.18 Capsicum annuum HOM05D004607 ORTHO05D005836 8.6e-12 74.7 51 56.9
Rhsim10G0196100 Rhododendron simsii HOM05D004607 ORTHO05D005836 8.6e-12 74.7 63 65.1
MELO3C013722.2 Cucumis melo HOM05D004607 ORTHO05D005836 1.9e-11 73.6 58 62.1
ECA232G4775 Erigeron canadensis HOM05D004607 ORTHO05D005836 7.3e-11 71.6 148 31.8
Cpa.g.sc117.83 Carica papaya HOM05D004607 ORTHO05D005836 9.5e-11 71.2 66 62.1
Gohir.D06G180900 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.6e-10 70.5 54 63.0
TAR376G0723 Trochodendron aralioides HOM05D004607 ORTHO05D005836 1.6e-10 70.5 54 63.0
Gohir.A06G172006 Gossypium hirsutum HOM05D004607 ORTHO05D005836 1.4e-09 67.4 54 59.3
Hund00045 Selenicereus undatus HOM05D004607 ORTHO05D005836 3.1e-09 66.2 160 28.8
QL06p052933 Quercus lobata HOM05D004607 ORTHO05D005836 5.2e-09 65.5 69 58.0
Glyma.16G116500 Glycine max HOM05D004607 ORTHO05D005836 1.5e-08 63.9 73 50.7
FAN23G1441 Fragaria x ananassa HOM05D004607 ORTHO05D005836 2.0e-08 63.5 63 58.7
VMungo1215G0163 Vigna mungo HOM05D004607 ORTHO05D005836 9.2e-06 54.7 55 60.0


User provided reference genes

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