Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G158930 Manihot esculenta HOM05D006824 ORTHO05D008779 5.9e-146 520.8 250 100.0
Potri.010G143000 Populus trichocarpa HOM05D006824 ORTHO05D008779 3.6e-95 352.1 207 77.3
RcHm_v2.0_Chr3g0448181 Rosa chinensis HOM05D006824 ORTHO05D008779 4.0e-94 348.6 245 69.8
Atru.chr12.2132 Acer truncatum HOM05D006824 ORTHO05D008779 2.6e-93 345.9 247 67.2
FAN05G0802 Fragaria x ananassa HOM05D006824 ORTHO05D008779 7.6e-93 344.4 237 70.5
Haze_04530 Corylus avellana HOM05D006824 ORTHO05D008779 6.4e-92 341.3 233 70.4
Actinidia38928 Actinidia chinensis HOM05D006824 ORTHO05D008779 8.4e-92 340.9 206 73.3
MD12G1258900 Malus domestica HOM05D006824 ORTHO05D008779 8.4e-92 340.9 224 70.5
Dinv04348 Davidia involucrata HOM05D006824 ORTHO05D008779 2.7e-90 335.9 235 67.7
VMungo1383G3541 Vigna mungo HOM05D006824 ORTHO05D008779 2.7e-90 335.9 217 69.6
Thecc.05G206500 Theobroma cacao HOM05D006824 ORTHO05D008779 6.0e-90 334.7 203 74.9
GSVIVG01019144001 Vitis vinifera HOM05D006824 ORTHO05D008779 7.8e-90 334.3 203 75.4
Lj8A196G47 Lonicera japonica HOM05D006824 ORTHO05D008779 1.0e-89 334.0 225 68.0
CSS0012922 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.7e-89 333.2 209 71.3
CSS0029100 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 1.7e-89 333.2 209 71.3
Duzib128G1599 Durio zibethinus HOM05D006824 ORTHO05D008779 2.3e-89 332.8 205 74.1
Phvul.008G055700 Phaseolus vulgaris HOM05D006824 ORTHO05D008779 2.3e-89 332.8 229 66.4
Prupe.6G359400 Prunus persica HOM05D006824 ORTHO05D008779 3.0e-89 332.4 246 63.4
Sabra10G0110900 Salix brachista HOM05D006824 ORTHO05D008779 3.9e-89 332.0 201 74.1
Medtr7g079530 Medicago truncatula HOM05D006824 ORTHO05D008779 5.1e-89 331.6 249 63.1
Gorai.003G050700 Gossypium raimondii HOM05D006824 ORTHO05D008779 1.1e-88 330.5 199 75.4
Psat3g104840 Pisum sativum HOM05D006824 ORTHO05D008779 1.5e-88 330.1 226 67.7
Gohir.A02G138800 Gossypium hirsutum HOM05D006824 ORTHO05D008779 4.3e-88 328.6 199 74.9
TAR362G0347 Trochodendron aralioides HOM05D006824 ORTHO05D008779 4.3e-88 328.6 210 72.9
COL.COLO4_19831 Corchorus olitorius HOM05D006824 ORTHO05D008779 9.6e-88 327.4 205 73.7
CiPaw.08G117600 Carya illinoinensis HOM05D006824 ORTHO05D008779 1.2e-87 327.0 217 68.2
FAN02G3690 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.6e-87 326.6 244 66.8
TPR.G28449 Trifolium pratense HOM05D006824 ORTHO05D008779 1.6e-87 326.6 201 73.1
Eucgr.H01379 Eucalyptus grandis HOM05D006824 ORTHO05D008779 2.8e-87 325.9 210 71.0
Rhsim03G0265800 Rhododendron simsii HOM05D006824 ORTHO05D008779 2.8e-87 325.9 200 73.5
Glyma.09G252100 Glycine max HOM05D006824 ORTHO05D008779 4.7e-87 325.1 233 65.7
vmacro06000 Vaccinium macrocarpon HOM05D006824 ORTHO05D008779 1.4e-86 323.6 200 72.5
FAN14G1847 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.8e-86 323.2 236 68.2
DCAR_005505 Daucus carota HOM05D006824 ORTHO05D008779 4.0e-86 322.0 197 71.1
CANSAT54G2581 Cannabis sativa HOM05D006824 ORTHO05D008779 1.2e-85 320.5 198 74.2
Nitab4.5_0005183g0030 Nicotiana tabacum HOM05D006824 ORTHO05D008779 1.2e-85 320.5 252 60.3
Ca_07965_v3 Cicer arietinum L. HOM05D006824 ORTHO05D008779 1.5e-85 320.1 244 61.5
PGR031G0982 Punica granatum HOM05D006824 ORTHO05D008779 2.0e-85 319.7 238 63.4
PGSC0003DMG400023472 Solanum tuberosum HOM05D006824 ORTHO05D008779 3.4e-85 318.9 227 64.8
Glyma.18G240500 Glycine max HOM05D006824 ORTHO05D008779 4.4e-85 318.5 227 64.3
Oeu010150.1 Olea europaea HOM05D006824 ORTHO05D008779 4.4e-85 318.5 200 69.0
Lalb_Chr19g0126751 Lupinus albus HOM05D006824 ORTHO05D008779 3.8e-84 315.5 201 69.2
EL10Ac4g09985 Beta vulgaris HOM05D006824 ORTHO05D008779 4.9e-84 315.1 250 60.0
Lsat_1_v5_gn_9_48761 Lactuca sativa HOM05D006824 ORTHO05D008779 4.9e-84 315.1 239 64.0
C06p28710 Brassica napus HOM05D006824 ORTHO05D008779 1.4e-83 313.5 197 72.1
Cc09_g03430 Coffea canephora HOM05D006824 ORTHO05D008779 1.9e-83 313.2 228 64.5
THA.LOC104813550 Tarenaya hassleriana HOM05D006824 ORTHO05D008779 1.9e-83 313.2 245 59.6
TWI14G0776 Tripterygium wilfordii HOM05D006824 ORTHO05D008779 1.9e-83 313.2 244 61.9
Aqoxy5G00154 Aquilegia oxysepala HOM05D006824 ORTHO05D008779 2.4e-83 312.8 222 64.4
A07p26320 Brassica napus HOM05D006824 ORTHO05D008779 2.4e-83 312.8 197 71.6
ClCG11G010940 Citrullus lanatus HOM05D006824 ORTHO05D008779 3.2e-83 312.4 200 70.5
Sed0011929 Sechium edule HOM05D006824 ORTHO05D008779 3.2e-83 312.4 212 67.5
Sopen05g034220 Solanum pennellii HOM05D006824 ORTHO05D008779 3.2e-83 312.4 229 63.3
BraA07t30276Z Brassica rapa HOM05D006824 ORTHO05D008779 4.2e-83 312.0 197 71.1
CsaV3_2G009540 Cucumis sativus L. HOM05D006824 ORTHO05D008779 1.2e-82 310.5 207 67.1
ECA232G2571 Erigeron canadensis HOM05D006824 ORTHO05D008779 1.6e-82 310.1 234 60.3
Aa31LG4G40 Aethionema arabicum HOM05D006824 ORTHO05D008779 2.7e-82 309.3 227 64.3
CAN.G694.18 Capsicum annuum HOM05D006824 ORTHO05D008779 3.5e-82 308.9 230 61.3
AUR62000332 Chenopodium quinoa HOM05D006824 ORTHO05D008779 3.5e-82 308.9 224 62.9
Sp5g35980 Schrenkiella parvula HOM05D006824 ORTHO05D008779 3.5e-82 308.9 210 67.6
arahy.Tifrunner.gnm1.ann1.3Y20MY Arachis hypogaea HOM05D006824 ORTHO05D008779 4.6e-82 308.5 198 68.7
AUR62006674 Chenopodium quinoa HOM05D006824 ORTHO05D008779 7.8e-82 307.8 200 68.5
arahy.Tifrunner.gnm1.ann1.8HY0WZ Arachis hypogaea HOM05D006824 ORTHO05D008779 1.0e-81 307.4 198 68.2
HanXRQChr11g0323941 Helianthus annuus HOM05D006824 ORTHO05D008779 1.0e-81 307.4 217 64.1
AL2G41760 Arabidopsis lyrata HOM05D006824 ORTHO05D008779 1.7e-81 306.6 197 70.1
PSO170G6807 Papaver somniferum HOM05D006824 ORTHO05D008779 3.9e-81 305.4 202 65.8
SGA_v2.0_scaffold13G06472 Striga asiatica HOM05D006824 ORTHO05D008779 3.9e-81 305.4 191 70.2
BolC6t38040H Brassica oleracea HOM05D006824 ORTHO05D008779 4.3e-80 302.0 220 64.1
Thhalv10019052m.g Eutrema salsugineum HOM05D006824 ORTHO05D008779 5.6e-80 301.6 197 68.0
CDE09G0666 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 1.3e-79 300.4 203 67.5
Carub.0002s2772 Capsella rubella HOM05D006824 ORTHO05D008779 3.6e-79 298.9 216 64.8
CARHR049030 Cardamine hirsuta HOM05D006824 ORTHO05D008779 4.8e-79 298.5 212 65.6
Ciclev10012732m.g Citrus clementina HOM05D006824 ORTHO05D008779 1.1e-78 297.4 206 67.0
Migut.F01795 Erythranthe guttata HOM05D006824 ORTHO05D008779 4.0e-78 295.4 199 65.3
SalBow3G1586 Salvia bowleyana HOM05D006824 ORTHO05D008779 1.5e-77 293.5 246 56.1
CDE02G0053 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 2.6e-77 292.7 212 62.7
HPP92_009935 Vanilla planifolia HOM05D006824 ORTHO05D008779 2.2e-76 289.7 193 67.9
AT1G79790 Arabidopsis thaliana HOM05D006824 ORTHO05D008779 3.8e-76 288.9 237 58.6
Lj1g0017863 Lotus japonicus HOM05D006824 ORTHO05D008779 4.9e-76 288.5 169 74.6
Cpa.g.sc123.9 Carica papaya HOM05D006824 ORTHO05D008779 3.6e-71 272.3 168 72.0
MELO3C025302.2 Cucumis melo HOM05D006824 ORTHO05D008779 3.1e-70 269.2 171 69.6
MELO3C008753.2 Cucumis melo HOM05D006824 ORTHO05D008779 4.0e-70 268.9 171 70.2
Nn1g09799 Nelumbo nucifera HOM05D006824 ORTHO05D008779 2.0e-69 266.5 162 75.3
Ah.06g195550 Amaranthus hybridus HOM05D006824 ORTHO05D008779 4.5e-69 265.4 253 54.5
MBI08_g02107_MAGBIO Magnolia biondii HOM05D006824 ORTHO05D008779 7.6e-69 264.6 170 68.8
SMO361G0474 Selaginella moellendorffii HOM05D006824 ORTHO05D008779 7.9e-66 254.6 195 59.0
FvH4_6g00710 Fragaria vesca HOM05D006824 ORTHO05D008779 2.3e-65 253.1 177 71.2
Pp3c3_9990 Physcomitrium patens HOM05D006824 ORTHO05D008779 8.7e-65 251.1 192 57.8
AagrBONN_evm.TU.Sc2ySwM_344.3559 Anthoceros agrestis HOM05D006824 ORTHO05D008779 7.4e-64 248.1 199 57.8
CBR_g54655 Chara braunii HOM05D006824 ORTHO05D008779 3.7e-63 245.7 194 55.7
Mapoly0002s0020 Marchantia polymorpha HOM05D006824 ORTHO05D008779 1.8e-62 243.4 196 53.1
Hma1.2p1_0171F.1_g075760 Hydrangea macrophylla HOM05D006824 ORTHO05D008779 9.0e-62 241.1 133 81.2
Gohir.D03G049300 Gossypium hirsutum HOM05D006824 ORTHO05D008779 2.0e-61 240.0 144 76.4
Nitab4.5_0009285g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 2.9e-60 236.1 219 54.8
SalBow3G1143 Salvia bowleyana HOM05D006824 ORTHO05D008779 3.3e-56 222.6 166 60.8
Zm00001eb169290 Zea mays HOM05D006824 ORTHO05D008779 1.6e-55 220.3 155 64.5
QL01p046721 Quercus lobata HOM05D006824 ORTHO05D008779 6.1e-50 201.8 125 72.0
MD04G1242100 Malus domestica HOM05D006824 ORTHO05D008779 3.9e-49 199.1 119 76.5
Cre13.g563200 Chlamydomonas reinhardtii HOM05D006824 ORTHO05D008779 3.3e-48 196.1 197 48.7
Nitab4.5_0008294g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 2.9e-44 183.0 229 44.1
arahy.Tifrunner.gnm1.ann1.EIZA4A Arachis hypogaea HOM05D006824 ORTHO05D008779 3.9e-41 172.6 104 69.2
Hund07329 Selenicereus undatus HOM05D006824 ORTHO05D008779 3.9e-41 172.6 218 44.0
PRCOL_00006210 Prasinoderma coloniale HOM05D006824 ORTHO05D008779 7.7e-37 158.3 182 40.1
arahy.Tifrunner.gnm1.ann1.JEI8NT Arachis hypogaea HOM05D006824 ORTHO05D008779 4.2e-35 152.5 145 49.0
FAN09G4644 Fragaria x ananassa HOM05D006824 ORTHO05D008779 2.7e-34 149.8 80 85.0
Solyc05g055820.3 Solanum lycopersicum HOM05D006824 ORTHO05D008779 7.7e-29 131.7 91 61.5
CARHR074720 Cardamine hirsuta HOM05D006824 ORTHO05D008779 2.5e-27 126.7 88 64.8
Psat3g104160 Pisum sativum HOM05D006824 ORTHO05D008779 2.2e-20 103.6 60 76.7
MD04G1242000 Malus domestica HOM05D006824 ORTHO05D008779 2.9e-20 103.2 70 61.4
SEGI_14412 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 8.0e-18 95.1 55 74.5
ATR0824G111 Amborella trichopoda HOM05D006824 ORTHO05D008779 2.6e-16 90.1 58 69.0
ATR0263G001 Amborella trichopoda HOM05D006824 ORTHO05D008779 7.5e-16 88.6 73 54.8
arahy.Tifrunner.gnm1.ann1.X7EDXL Arachis hypogaea HOM05D006824 ORTHO05D021501 1.3e-15 87.8 55 69.1
FAN09G1422 Fragaria x ananassa HOM05D001170 ORTHO05D002759 4.5e-13 79.3 54 66.7
SEGI_33071 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 3.8e-12 76.3 75 45.3
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 1.6e-10 70.9 92 42.4
arahy.Tifrunner.gnm1.ann1.96LZZJ Arachis hypogaea HOM05D006824 ORTHO05D021501 1.6e-10 70.9 92 42.4
arahy.Tifrunner.gnm1.ann1.DM3ST4 Arachis hypogaea HOM05D006824 ORTHO05D021501 1.6e-10 70.9 92 42.4
arahy.Tifrunner.gnm1.ann1.0X0W56 Arachis hypogaea HOM05D006824 ORTHO05D021501 2.1e-10 70.5 97 40.2
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 4.7e-10 69.3 91 41.8
AagrBONN_evm.TU.Sc2ySwM_368.158 Anthoceros agrestis HOM05D022947 ORTHO05D023489 6.3e-07 58.9 180 26.1
arahy.Tifrunner.gnm1.ann1.LK4K8I Arachis hypogaea HOM05D006688 ORTHO05D008550 9.2e-06 55.1 34 61.8


User provided reference genes

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