Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 3.7e-166 588.2 308 100.0
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 2.4e-117 426.0 308 70.8
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 6.9e-112 407.9 299 70.9
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 1.7e-110 403.3 308 69.2
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 3.0e-107 392.5 308 66.9
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 3.9e-107 392.1 302 68.5
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 3.9e-107 392.1 302 68.5
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 4.3e-106 388.7 302 67.5
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 2.1e-105 386.3 305 67.5
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 4.8e-105 385.2 308 67.2
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 4.8e-105 385.2 308 67.2
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.4e-104 382.9 308 67.2
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 3.1e-104 382.5 308 64.3
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 3.1e-104 382.5 308 63.0
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 4.0e-104 382.1 299 67.2
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 5.3e-104 381.7 308 64.6
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 5.3e-104 381.7 298 68.1
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 6.9e-104 381.3 308 66.9
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 6.9e-104 381.3 304 64.5
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 9.0e-104 380.9 308 66.2
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 9.0e-104 380.9 301 66.1
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 9.0e-104 380.9 310 66.5
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 1.2e-103 380.6 306 64.4
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 2.0e-103 379.8 308 66.6
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 2.0e-103 379.8 307 65.5
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 4.5e-103 378.6 299 64.5
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 7.6e-103 377.9 308 64.9
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 4.9e-102 375.2 308 63.3
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 8.4e-102 374.4 308 62.7
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 1.1e-101 374.0 308 64.9
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 1.1e-101 374.0 302 65.6
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 1.2e-100 370.5 299 65.9
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 2.1e-100 369.8 300 64.7
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 7.9e-100 367.9 307 63.5
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 3.0e-99 365.9 301 63.8
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 3.9e-99 365.5 304 59.2
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 5.1e-99 365.2 310 64.8
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 6.7e-99 364.8 308 62.3
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 3.3e-98 362.5 308 63.6
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 4.3e-98 362.1 301 63.5
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 4.3e-98 362.1 308 64.0
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 4.3e-98 362.1 305 64.3
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 5.6e-98 361.7 302 63.9
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 7.4e-98 361.3 308 63.0
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 9.6e-98 360.9 302 61.9
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 9.6e-98 360.9 305 63.9
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 3.7e-97 359.0 307 63.5
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 4.8e-97 358.6 302 63.6
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 4.8e-97 358.6 296 61.5
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 6.2e-97 358.2 304 62.5
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 1.1e-96 357.5 299 63.9
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 2.4e-96 356.3 299 63.5
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 2.4e-96 356.3 299 63.5
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 6.9e-96 354.8 307 62.2
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 9.0e-96 354.4 315 59.0
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 1.5e-95 353.6 300 62.3
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 7.6e-95 351.3 308 62.3
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 2.2e-94 349.7 309 60.8
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 6.4e-94 348.2 306 58.2
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 8.4e-94 347.8 319 58.0
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 8.4e-94 347.8 298 60.1
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 1.4e-93 347.1 309 60.8
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 4.2e-93 345.5 308 62.3
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 5.5e-93 345.1 299 61.5
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 7.1e-93 344.7 262 66.8
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 1.2e-92 344.0 314 60.5
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 1.2e-92 344.0 308 62.0
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 2.7e-92 342.8 310 60.6
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 3.5e-92 342.4 314 60.2
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 4.6e-92 342.0 307 60.9
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 7.9e-92 341.3 308 60.7
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 1.3e-91 340.5 298 61.1
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 1.3e-91 340.5 298 61.1
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 3.9e-91 339.0 294 62.9
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 6.7e-91 338.2 314 59.2
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 6.7e-91 338.2 314 59.6
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 8.7e-91 337.8 314 59.6
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 1.9e-90 336.7 300 61.3
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 5.6e-90 335.1 308 59.1
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 7.4e-90 334.7 308 55.2
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 3.7e-89 332.4 295 61.4
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 3.7e-89 332.4 298 60.4
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 3.7e-89 332.4 314 58.3
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 6.2e-89 331.6 295 58.0
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 1.8e-88 330.1 308 59.4
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 4.0e-88 328.9 278 61.2
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 4.0e-88 328.9 306 58.8
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 6.9e-88 328.2 309 60.5
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 6.5e-86 321.6 303 57.8
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 8.4e-86 321.2 299 57.5
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 8.4e-86 321.2 297 57.9
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 2.5e-85 319.7 300 59.3
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 7.1e-85 318.2 312 56.4
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 9.3e-85 317.8 305 56.7
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 7.9e-84 314.7 308 56.2
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 1.0e-83 314.3 304 55.3
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 1.8e-83 313.5 305 56.4
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 5.1e-83 312.0 305 58.0
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 5.1e-83 312.0 313 57.8
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 8.7e-83 311.2 244 67.2
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 1.9e-82 310.1 308 57.5
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 9.7e-82 307.8 309 52.4
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 1.6e-81 307.0 283 59.0
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 2.2e-81 306.6 237 68.4
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 2.8e-81 306.2 299 57.9
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 3.7e-81 305.8 312 57.4
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 1.4e-80 303.9 297 56.6
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 1.8e-80 303.5 265 62.6
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 2.4e-80 303.1 309 51.5
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 2.0e-79 300.1 303 53.5
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 4.2e-77 292.4 355 49.0
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 2.7e-76 289.7 276 59.8
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 2.3e-75 286.6 308 51.9
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 8.8e-75 284.6 319 47.6
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 3.3e-74 282.7 311 53.7
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 1.8e-72 276.9 239 59.0
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 1.2e-68 264.2 311 49.8
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 3.6e-68 262.7 231 61.9
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 3.0e-67 259.6 283 52.7
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 1.9e-61 240.4 233 56.2
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 2.1e-60 236.9 301 46.8
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 4.7e-60 235.7 276 48.6
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 2.6e-58 229.9 298 47.7
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 3.2e-53 213.0 200 54.0
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 6.7e-51 205.3 206 48.5
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 2.8e-49 199.9 185 57.3
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 4.8e-49 199.1 204 52.9
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 4.8e-41 172.6 266 41.0
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 1.8e-35 154.1 282 39.4
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 3.5e-31 139.8 102 65.7
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.9e-30 136.7 136 56.6
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.9e-30 136.7 136 56.6
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 3.1e-27 126.7 134 54.5
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 9.8e-26 121.7 222 32.4
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 7.8e-23 112.1 228 34.2
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 2.5e-21 107.1 199 33.2
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 1.8e-19 100.9 68 64.7
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 3.1e-19 100.1 66 66.7
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 1.5e-18 97.8 97 61.9
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.1e-15 87.4 52 75.0
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 3.5e-15 86.7 64 65.6
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 1.7e-14 84.3 62 66.1
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 6.6e-14 82.4 58 67.2
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 2.1e-12 77.4 114 46.5
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 6.8e-11 72.4 124 39.5
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 8.9e-11 72.0 128 44.5
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 7.5e-10 68.9 45 64.4
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 2.9e-09 67.0 70 48.6
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 4.9e-09 66.2 50 58.0
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 2.4e-08 63.9 43 69.8
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 3.5e-07 60.1 39 64.1


User provided reference genes

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