Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 1.2e-195 686.4 377 100.0
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 2.3e-178 629.0 377 91.2
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 2.0e-177 625.9 379 89.2
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 3.3e-177 625.2 376 90.7
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 2.8e-176 622.1 374 90.4
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 4.8e-176 621.3 377 88.3
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 9.1e-175 617.1 386 86.3
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 1.6e-174 616.3 387 86.3
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 1.6e-174 616.3 376 87.5
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 1.0e-173 613.6 374 88.5
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 2.2e-173 612.5 376 86.4
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 3.8e-173 611.7 372 87.9
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 1.1e-172 610.1 366 89.9
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 2.5e-172 609.0 387 86.6
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 2.5e-172 609.0 377 88.6
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 1.6e-171 606.3 374 88.0
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 8.0e-171 604.0 377 88.3
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 1.0e-170 603.6 370 86.8
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 1.4e-170 603.2 376 85.4
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 2.3e-170 602.4 372 89.8
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 2.3e-170 602.4 377 88.1
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 2.3e-170 602.4 384 85.7
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 6.8e-170 600.9 376 84.3
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 1.2e-169 600.1 373 85.5
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 1.5e-169 599.7 375 86.4
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 2.6e-169 599.0 375 86.1
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 2.6e-169 599.0 379 87.6
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 2.6e-169 599.0 377 85.9
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 3.4e-169 598.6 373 86.1
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 5.7e-169 597.8 376 85.1
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 9.8e-169 597.0 386 82.6
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 3.7e-168 595.1 387 83.2
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 8.3e-168 594.0 385 85.5
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 8.3e-168 594.0 387 83.5
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 9.1e-167 590.5 384 82.6
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 9.1e-167 590.5 386 82.4
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 5.9e-166 587.8 370 85.1
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 4.2e-164 581.6 387 82.9
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 4.2e-164 581.6 374 86.9
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 4.2e-164 581.6 376 85.1
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 7.2e-164 580.9 384 83.6
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 1.2e-163 580.1 367 86.6
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 6.8e-162 574.3 381 81.4
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 7.5e-161 570.9 364 85.4
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 1.1e-159 567.0 365 83.6
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 1.8e-159 566.2 390 78.2
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 1.8e-159 566.2 354 85.3
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 3.5e-158 562.0 377 81.4
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 4.5e-158 561.6 377 80.6
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 7.7e-158 560.8 387 80.4
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 7.7e-158 560.8 390 79.7
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 2.9e-157 558.9 372 82.0
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 5.0e-157 558.1 377 81.2
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 5.0e-157 558.1 387 80.1
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 1.5e-156 556.6 367 82.8
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 9.5e-156 553.9 376 80.6
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 9.5e-156 553.9 350 84.9
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 9.5e-156 553.9 377 81.2
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 4.7e-155 551.6 366 83.1
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 8.0e-155 550.8 390 78.7
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 2.0e-153 546.2 388 79.9
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 2.0e-153 546.2 366 82.0
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 3.4e-153 545.4 363 82.4
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 7.5e-153 544.3 365 81.9
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 2.2e-152 542.7 384 78.4
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 2.2e-152 542.7 363 82.1
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 2.9e-152 542.3 346 83.5
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 3.7e-152 542.0 389 77.9
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 3.7e-152 542.0 389 77.9
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 3.2e-151 538.9 411 75.9
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 4.1e-151 538.5 388 78.1
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 2.7e-150 535.8 417 73.9
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 4.6e-150 535.0 351 83.2
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 4.6e-150 535.0 386 78.0
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 5.9e-150 534.6 343 84.8
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 5.9e-150 534.6 355 81.7
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 3.0e-149 532.3 369 79.7
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 3.9e-149 531.9 387 77.5
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 5.0e-149 531.6 345 84.1
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 6.6e-149 531.2 346 83.8
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 9.5e-148 527.3 367 79.0
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 2.8e-147 525.8 354 81.4
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 4.7e-147 525.0 367 77.4
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.8e-146 523.1 384 78.4
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.5e-145 520.0 350 81.1
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 2.6e-145 519.2 371 77.1
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 4.9e-144 515.0 363 80.7
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 8.3e-144 514.2 357 78.7
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 8.3e-144 514.2 355 79.2
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 1.9e-143 513.1 320 90.3
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 1.6e-142 510.0 373 75.9
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 4.3e-140 501.9 355 77.7
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 1.2e-139 500.4 348 77.0
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 6.2e-139 498.0 386 71.8
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 8.1e-139 497.7 378 72.5
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 1.8e-138 496.5 352 76.4
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 8.9e-138 494.2 352 78.7
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.5e-137 493.4 358 77.9
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 2.6e-137 492.7 359 75.8
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 5.8e-137 491.5 374 74.3
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 2.2e-136 489.6 362 75.1
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 4.9e-136 488.4 343 79.3
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 2.4e-135 486.1 379 72.0
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 2.7e-134 482.6 346 75.4
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 2.3e-133 479.6 343 77.8
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 3.9e-133 478.8 377 72.4
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 1.5e-132 476.9 368 72.3
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 8.1e-131 471.1 346 75.7
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 1.1e-130 470.7 354 74.6
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 1.8e-130 469.9 348 76.1
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 4.4e-129 465.3 365 69.3
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 5.8e-129 464.9 346 74.9
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 5.8e-129 464.9 346 74.9
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 2.4e-127 459.5 353 71.1
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 9.2e-127 457.6 349 74.2
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 2.1e-126 456.4 352 73.6
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 3.6e-123 445.7 330 74.2
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 2.4e-122 443.0 312 79.2
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 1.5e-121 440.3 379 69.4
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 5.8e-121 438.3 362 64.6
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 2.4e-119 433.0 267 86.1
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 9.3e-119 431.0 292 83.2
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 1.9e-116 423.3 389 65.8
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.6e-115 419.1 361 62.0
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 3.4e-113 412.5 286 78.7
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 8.4e-112 407.9 368 60.9
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 2.1e-107 393.3 363 61.2
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 2.8e-107 392.9 267 80.1
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 2.8e-107 392.9 326 64.4
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.6e-107 392.5 314 65.3
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 1.3e-104 384.0 305 73.8
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 4.2e-103 379.0 346 59.2
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 1.2e-102 377.5 272 76.8
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 1.2e-102 377.5 218 92.7
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.7e-102 376.3 374 56.1
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 2.0e-97 360.1 309 66.7
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 7.9e-94 348.2 348 58.0
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 6.9e-90 335.1 224 83.0
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 3.4e-73 279.6 172 86.6
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 6.3e-51 205.7 125 88.0
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 5.0e-48 196.1 119 86.6
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 6.5e-48 195.7 140 78.6
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 3.2e-47 193.4 142 76.1
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 5.7e-44 182.6 139 74.8
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 1.3e-35 154.8 97 81.4
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 6.6e-32 142.5 105 70.5
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 3.7e-27 126.7 94 68.1
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 4.9e-27 126.3 85 72.9
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 7.0e-26 122.5 85 71.8
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 3.9e-24 116.7 81 77.8
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 4.3e-23 113.2 100 54.0
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 1.1e-21 108.6 81 74.1
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 9.8e-20 102.1 130 51.5
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 3.7e-19 100.1 93 61.3
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 9.2e-18 95.5 58 91.4
COL.COLO4_28287 Corchorus olitorius HOM05D004327 ORTHO05D005032 1.0e-16 92.0 53 96.2
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 1.1e-13 82.0 130 46.2
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 1.4e-13 81.6 72 55.6
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.8e-13 81.3 97 53.6
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 3.4e-12 77.0 42 90.5
BolC9t54329H Brassica oleracea HOM05D004327 ORTHO05D005032 7.6e-12 75.9 59 74.6
PRCOL_00002192 Prasinoderma coloniale HOM05D004327 ORTHO05D005032 2.4e-10 70.9 249 28.1
BcaC03g14154 Brassica carinata HOM05D004327 ORTHO05D032179 2.7e-09 67.4 78 50.0
CiPaw.16G058000 Carya illinoinensis HOM05D002292 ORTHO05D003256 1.3e-08 65.1 38 94.7
MCO09G810 Micromonas commoda HOM05D004327 ORTHO05D005032 2.5e-07 60.8 163 27.6


User provided reference genes

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