Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 0.0e+00 1203.0 650 100.0
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 1.2e-286 989.6 642 83.2
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 4.4e-286 987.6 642 83.5
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 7.3e-273 943.7 639 77.9
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 7.8e-267 923.7 628 76.1
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 1.1e-265 919.8 640 75.6
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 2.5e-265 918.7 640 76.2
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 5.3e-263 911.0 632 75.2
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 6.9e-263 910.6 639 74.3
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 3.4e-262 908.3 639 74.5
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 2.2e-261 905.6 631 74.5
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 4.9e-261 904.4 634 74.3
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 1.9e-260 902.5 636 75.0
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 2.4e-260 902.1 634 73.8
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 5.4e-260 901.0 638 74.1
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 7.1e-260 900.6 639 73.6
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 1.3e-258 896.3 631 74.2
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 1.8e-258 896.0 635 76.1
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 3.0e-258 895.2 634 74.3
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 5.1e-258 894.4 638 73.5
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 8.7e-258 893.6 632 73.6
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 5.6e-257 891.0 628 74.0
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 7.4e-257 890.6 632 75.0
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 7.4e-257 890.6 627 74.3
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 9.6e-257 890.2 635 75.4
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 1.6e-256 889.4 626 74.6
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 4.8e-256 887.9 641 73.2
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 8.1e-256 887.1 643 72.6
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 1.4e-255 886.3 635 73.9
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 1.4e-255 886.3 637 75.2
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 3.1e-255 885.2 637 75.0
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 2.0e-254 882.5 640 73.9
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 2.6e-254 882.1 638 73.2
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 2.6e-254 882.1 627 73.8
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 3.4e-254 881.7 631 75.3
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 7.6e-254 880.6 632 72.8
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.3e-253 879.8 636 73.3
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 1.3e-253 879.8 636 73.3
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 1.7e-253 879.4 633 74.2
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 1.7e-253 879.4 627 74.3
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 8.4e-253 877.1 632 73.6
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 1.6e-251 872.8 633 72.0
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 6.0e-251 870.9 638 73.0
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 1.3e-250 869.8 635 72.8
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 1.8e-250 869.4 635 72.3
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 3.0e-250 868.6 626 71.2
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 8.7e-250 867.1 632 71.7
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 9.6e-249 863.6 632 72.0
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 2.8e-248 862.1 635 72.6
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 4.8e-248 861.3 642 71.0
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 8.2e-248 860.5 631 71.9
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 1.1e-247 860.1 635 71.5
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 3.1e-247 858.6 631 71.0
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 9.0e-247 857.1 649 70.0
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 2.0e-246 855.9 631 71.0
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 3.4e-246 855.1 646 70.0
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 5.8e-246 854.4 640 70.6
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 2.2e-245 852.4 623 73.0
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 7.1e-244 847.4 633 70.9
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 1.2e-243 846.7 640 71.2
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 3.5e-243 845.1 643 69.7
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 4.6e-243 844.7 641 69.9
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 4.6e-243 844.7 641 69.3
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 7.9e-243 844.0 640 69.8
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 7.9e-243 844.0 642 70.1
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 7.9e-243 844.0 626 71.2
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 1.8e-242 842.8 642 69.6
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 5.1e-242 841.3 636 70.3
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 5.1e-242 841.3 640 70.0
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 5.1e-242 841.3 644 69.1
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 6.7e-242 840.9 640 69.8
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 6.7e-242 840.9 626 70.8
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 1.1e-241 840.1 628 70.2
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 9.7e-241 837.0 632 69.3
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 1.3e-240 836.6 635 69.8
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 6.3e-240 834.3 641 69.6
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 6.3e-240 834.3 645 69.3
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 1.1e-239 833.6 647 69.1
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 1.1e-239 833.6 638 69.9
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 4.1e-239 831.6 632 68.8
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 1.5e-238 829.7 635 69.3
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 5.9e-238 827.8 631 68.5
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 1.0e-237 827.0 639 68.7
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.0e-237 827.0 637 68.3
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 1.1e-236 823.5 631 68.0
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 2.5e-236 822.4 634 68.9
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 3.2e-236 822.0 631 67.8
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 2.1e-235 819.3 632 68.4
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 2.1e-235 819.3 631 67.8
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 1.4e-234 816.6 629 70.0
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 8.8e-234 813.9 589 72.8
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 9.7e-233 810.4 635 66.6
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 1.3e-232 810.1 629 66.6
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 4.8e-232 808.1 649 65.3
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 1.1e-231 807.0 645 67.9
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 1.8e-231 806.2 585 72.6
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 4.1e-231 805.1 634 66.7
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 9.1e-231 803.9 635 67.4
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 4.5e-230 801.6 639 67.3
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 5.0e-229 798.1 630 65.7
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 4.7e-227 791.6 633 65.7
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 3.8e-221 771.9 636 64.9
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 4.2e-220 768.5 648 65.1
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 2.1e-219 766.1 632 65.3
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 4.7e-219 765.0 632 65.3
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 5.3e-215 751.5 642 64.0
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 7.5e-209 731.1 631 61.3
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 3.8e-205 718.8 628 63.1
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 6.5e-205 718.0 631 60.4
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 3.8e-197 692.2 631 59.0
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 6.1e-195 684.9 543 67.6
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 3.0e-194 682.6 633 57.7
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 1.7e-192 676.8 629 59.6
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 3.5e-190 669.1 637 59.2
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 7.8e-190 667.9 636 59.1
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 5.0e-189 665.2 636 56.8
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 7.5e-185 651.4 628 59.1
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 2.1e-179 633.3 625 59.2
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 2.5e-164 583.2 634 54.6
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 4.3e-164 582.4 542 59.6
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 7.6e-153 545.0 634 52.7
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 1.7e-144 517.3 653 44.6
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 3.8e-144 516.2 646 46.9
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 1.6e-126 457.6 652 44.3
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 1.1e-114 418.3 337 66.2
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 2.4e-106 390.6 321 65.4
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 4.8e-91 339.7 380 49.5
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 3.7e-83 313.5 233 67.8
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 1.4e-69 268.5 301 52.8
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 2.9e-43 181.0 119 80.7
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 6.4e-43 179.9 545 29.2
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 1.1e-39 169.1 118 72.0
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 4.3e-23 114.0 113 58.4
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 1.1e-15 89.4 93 52.7
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 2.9e-11 74.7 44 81.8
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 1.4e-10 72.4 84 41.7


User provided reference genes

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