Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G153400 Manihot esculenta HOM05D003020 ORTHO05D003226 6.5e-140 500.7 258 100.0
Manes.14G153300 Manihot esculenta HOM05D003020 ORTHO05D003226 6.0e-101 371.3 256 73.8
Manes.14G153500 Manihot esculenta HOM05D003020 ORTHO05D003226 3.0e-100 369.0 260 77.7
Potri.006G168400 Populus trichocarpa HOM05D003020 ORTHO05D003226 6.5e-55 218.4 273 52.7
Potri.018G092800 Populus trichocarpa HOM05D003020 ORTHO05D003226 9.6e-51 204.5 242 51.7
Cfa013505 Carpinus fangiana HOM05D003020 ORTHO05D003226 6.3e-50 201.8 238 52.9
Haze_22098 Corylus avellana HOM05D003020 ORTHO05D003226 6.9e-49 198.4 236 51.3
Sabra18G0080000 Salix brachista HOM05D003020 ORTHO05D003226 4.5e-48 195.7 219 54.3
CiPaw.07G192300 Carya illinoinensis HOM05D003020 ORTHO05D003226 4.2e-46 189.1 252 46.0
Prupe.1G086100 Prunus persica HOM05D003020 ORTHO05D003226 2.3e-44 183.3 245 48.6
CiPaw.08G036400 Carya illinoinensis HOM05D003020 ORTHO05D003226 9.7e-43 177.9 238 46.2
CiPaw.05G049400 Carya illinoinensis HOM05D003020 ORTHO05D003226 1.3e-42 177.6 250 45.2
COL.COLO4_35897 Corchorus olitorius HOM05D003020 ORTHO05D003226 1.1e-41 174.5 248 48.4
Duzib150G1089 Durio zibethinus HOM05D003020 ORTHO05D003226 3.1e-41 172.9 246 46.7
FvH4_4g08220 Fragaria vesca HOM05D003020 ORTHO05D003226 3.1e-41 172.9 244 45.5
FAN12G0399 Fragaria x ananassa HOM05D003020 ORTHO05D003226 3.1e-41 172.9 244 45.5
RcHm_v2.0_Chr4g0402471 Rosa chinensis HOM05D003020 ORTHO05D003226 4.1e-41 172.6 246 45.1
Sabra06G0129900 Salix brachista HOM05D003020 ORTHO05D003226 9.0e-41 171.4 201 52.7
Duzib168G2116 Durio zibethinus HOM05D003020 ORTHO05D003226 1.2e-40 171.0 250 47.6
Thecc.09G173200 Theobroma cacao HOM05D003020 ORTHO05D003226 1.5e-40 170.6 251 46.6
CANSAT11G1249 Cannabis sativa HOM05D003020 ORTHO05D003226 5.9e-40 168.7 251 48.2
Gohir.D08G094000 Gossypium hirsutum HOM05D003020 ORTHO05D003226 2.2e-39 166.8 272 44.5
MD13G1253900 Malus domestica HOM05D003020 ORTHO05D003226 3.8e-39 166.0 236 44.1
Ca_21174_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 5.0e-39 165.6 243 44.4
Ca_21223_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 5.0e-39 165.6 243 44.4
Atru.chr7.633 Acer truncatum HOM05D003020 ORTHO05D003226 8.5e-39 164.9 247 44.5
QL02p097728 Quercus lobata HOM05D003020 ORTHO05D003226 8.5e-39 164.9 253 46.6
FAN22G0428 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.1e-38 164.5 246 43.9
FAN07G1960 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.4e-38 164.1 245 42.9
Medtr4g128160 Medicago truncatula HOM05D003020 ORTHO05D003226 3.2e-38 162.9 247 44.1
Eucgr.C00156 Eucalyptus grandis HOM05D003020 ORTHO05D003226 4.2e-38 162.5 237 43.9
Gohir.A08G084400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 4.2e-38 162.5 272 43.4
Cpa.g.sc95.49 Carica papaya HOM05D003020 ORTHO05D003226 7.2e-38 161.8 268 44.8
FAN17G2997 Fragaria x ananassa HOM05D003020 ORTHO05D003226 9.4e-38 161.4 246 43.1
VMungo1215G0012 Vigna mungo HOM05D003020 ORTHO05D003226 7.9e-37 158.3 240 43.3
Glyma.17G063300 Glycine max HOM05D003020 ORTHO05D003226 1.4e-36 157.5 243 43.6
Glyma.20G083700 Glycine max HOM05D003020 ORTHO05D003226 3.9e-36 156.0 246 43.9
Psat0s2889g0080 Pisum sativum HOM05D003020 ORTHO05D003226 4.3e-35 152.5 248 41.9
PGR102G0964 Punica granatum HOM05D003020 ORTHO05D003226 5.7e-35 152.1 279 41.6
MD16G1257900 Malus domestica HOM05D003020 ORTHO05D003226 7.4e-35 151.8 238 43.3
Oeu042166.1 Olea europaea HOM05D003020 ORTHO05D003226 1.3e-34 151.0 242 44.6
Phvul.003G146000 Phaseolus vulgaris HOM05D003020 ORTHO05D003226 2.2e-34 150.2 238 42.4
Duzib170G0355 Durio zibethinus HOM05D003020 ORTHO05D003226 1.1e-33 147.9 245 44.1
Dinv41250 Davidia involucrata HOM05D003020 ORTHO05D003226 1.5e-32 144.1 239 42.7
CsaV3_1G031590 Cucumis sativus L. HOM05D003020 ORTHO05D003226 2.6e-32 143.3 238 41.6
Actinidia04141 Actinidia chinensis HOM05D003020 ORTHO05D003226 3.4e-32 142.9 240 46.2
TPR.G5404 Trifolium pratense HOM05D003020 ORTHO05D003226 3.4e-32 142.9 273 38.1
Ciclev10010819m.g Citrus clementina HOM05D003020 ORTHO05D003226 5.9e-32 142.1 253 38.3
Hma1.2p1_1025F.1_g249270 Hydrangea macrophylla HOM05D003020 ORTHO05D003226 1.3e-31 141.0 243 43.2
ClCG06G013330 Citrullus lanatus HOM05D003020 ORTHO05D003226 2.2e-31 140.2 241 41.9
Eucgr.C02308 Eucalyptus grandis HOM05D003020 ORTHO05D003226 2.2e-31 140.2 222 42.3
MELO3C017464.2 Cucumis melo HOM05D003020 ORTHO05D003226 6.5e-31 138.7 241 41.5
DCAR_014702 Daucus carota HOM05D003020 ORTHO05D003226 3.2e-30 136.3 244 40.2
Thhalv10026023m.g Eutrema salsugineum HOM05D003020 ORTHO05D003226 3.2e-30 136.3 239 38.1
Lalb_Chr12g0199391 Lupinus albus HOM05D003020 ORTHO05D003226 3.2e-30 136.3 245 41.6
TAR625G0330 Trochodendron aralioides HOM05D003020 ORTHO05D003226 4.2e-30 136.0 246 39.8
Gorai.004G031500 Gossypium raimondii HOM05D003020 ORTHO05D003226 7.2e-30 135.2 247 42.1
Gohir.A08G023400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 2.7e-29 133.3 248 41.5
TAR636G2901 Trochodendron aralioides HOM05D003020 ORTHO05D003226 7.9e-29 131.7 250 41.6
Lalb_Chr07g0180461 Lupinus albus HOM05D003020 ORTHO05D003226 2.3e-28 130.2 210 44.3
Sed0024933 Sechium edule HOM05D003020 ORTHO05D003226 3.0e-28 129.8 230 41.3
Gohir.D08G033900 Gossypium hirsutum HOM05D003020 ORTHO05D003226 8.8e-28 128.3 247 41.3
THA.LOC104803497 Tarenaya hassleriana HOM05D003020 ORTHO05D003226 1.5e-27 127.5 249 36.5
Sed0018084 Sechium edule HOM05D003020 ORTHO05D003226 2.0e-27 127.1 233 42.5
Lj4g0004544 Lotus japonicus HOM05D003020 ORTHO05D003226 7.4e-27 125.2 255 39.6
AT4G30230 Arabidopsis thaliana HOM05D003020 ORTHO05D003226 1.7e-26 124.0 246 39.8
TAR383G0645 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.7e-26 124.0 248 38.3
TAR383G0698 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.4e-25 120.9 248 39.9
DCAR_017969 Daucus carota HOM05D003020 ORTHO05D003226 2.4e-25 120.2 213 39.9
TWI63G1498 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 5.3e-25 119.0 234 39.7
Oeu004196.1 Olea europaea HOM05D003020 ORTHO05D003226 7.0e-25 118.6 241 40.2
Sp7g28110 Schrenkiella parvula HOM05D003020 ORTHO05D003226 1.2e-24 117.9 236 36.9
Lj9P685T21 Lonicera japonica HOM05D003020 ORTHO05D003226 1.6e-24 117.5 218 38.1
CARHR238140 Cardamine hirsuta HOM05D003020 ORTHO05D003226 3.5e-24 116.3 219 37.0
AL7G21920 Arabidopsis lyrata HOM05D003020 ORTHO05D003226 5.9e-24 115.5 245 38.0
Carub.0007s1038 Capsella rubella HOM05D003020 ORTHO05D003226 5.9e-24 115.5 243 35.8
ECA240G3460 Erigeron canadensis HOM05D003020 ORTHO05D003226 1.3e-23 114.4 251 37.8
Gorai.004G099800 Gossypium raimondii HOM05D003020 ORTHO05D003226 1.3e-23 114.4 181 44.8
BraA03t15021Z Brassica rapa HOM05D003020 ORTHO05D003226 2.2e-23 113.6 240 36.7
A03p59690 Brassica napus HOM05D003020 ORTHO05D003226 5.0e-23 112.5 240 35.8
Lsat_1_v5_gn_7_54521 Lactuca sativa HOM05D003020 ORTHO05D003226 5.0e-23 112.5 254 35.4
TWI34G0269 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 6.5e-23 112.1 265 37.7
THA.LOC104819978 Tarenaya hassleriana HOM05D003020 ORTHO05D003226 8.5e-23 111.7 252 35.7
Rhsim01G0004800 Rhododendron simsii HOM05D003020 ORTHO05D003226 7.2e-22 108.6 255 36.5
BcaC09g51805 Brassica carinata HOM05D003020 ORTHO05D003226 9.4e-22 108.2 239 35.1
C01p08830 Brassica napus HOM05D003020 ORTHO05D003226 9.4e-22 108.2 239 35.1
C07p57710 Brassica napus HOM05D003020 ORTHO05D003226 9.4e-22 108.2 243 36.2
BolC1t00873H Brassica oleracea HOM05D003020 ORTHO05D003226 9.4e-22 108.2 239 35.1
BolC7t46232H Brassica oleracea HOM05D003020 ORTHO05D003226 9.4e-22 108.2 243 36.2
Migut.J01478 Erythranthe guttata HOM05D003020 ORTHO05D003226 9.4e-22 108.2 242 38.4
TAR383G0860 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.2e-21 107.8 237 37.1
Nn2g12774 Nelumbo nucifera HOM05D003020 ORTHO05D003226 3.6e-21 106.3 238 34.5
BcaNung03008 Brassica carinata HOM05D003020 ORTHO05D003226 4.7e-21 105.9 241 35.3
A01p07910 Brassica napus HOM05D003020 ORTHO05D003226 4.7e-21 105.9 243 34.2
BraA01t00737Z Brassica rapa HOM05D003020 ORTHO05D003226 4.7e-21 105.9 243 34.2
SalBow6G2220 Salvia bowleyana HOM05D003020 ORTHO05D003226 6.1e-21 105.5 235 36.6
Lj9A26T13 Lonicera japonica HOM05D003020 ORTHO05D003226 6.7e-20 102.1 238 36.1
Oeu025224.1 Olea europaea HOM05D003020 ORTHO05D003226 1.5e-19 100.9 242 32.6
Lj9C24T7 Lonicera japonica HOM05D003020 ORTHO05D003226 2.0e-19 100.5 238 36.1
Lsat_1_v5_gn_5_84881 Lactuca sativa HOM05D003020 ORTHO05D003226 2.6e-19 100.1 241 36.5
MBI14_g17368_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D000358 2.6e-19 100.1 245 34.3
Aqoxy7G03070 Aquilegia oxysepala HOM05D003020 ORTHO05D003226 1.7e-18 97.4 255 36.5
Aa31LG2G20290 Aethionema arabicum HOM05D003020 ORTHO05D003226 8.2e-18 95.1 240 33.3
Ciclev10010534m.g Citrus clementina HOM05D003020 ORTHO05D003226 4.1e-17 92.8 243 34.6
Dinv42724 Davidia involucrata HOM05D003020 ORTHO05D003226 5.3e-17 92.4 239 36.0
Dinv43377 Davidia involucrata HOM05D003020 ORTHO05D003226 5.3e-17 92.4 239 36.0
HanXRQChr09g0244991 Helianthus annuus HOM05D003020 ORTHO05D003226 1.2e-16 91.3 258 33.7
MSTRG.6214 Avicennia marina HOM05D003020 ORTHO05D003226 2.7e-16 90.1 205 38.5
MBI16_g42581_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D003226 2.7e-16 90.1 224 32.1
MBI16_g41356_MAGBIO Magnolia biondii HOM05D003020 ORTHO05D003226 1.3e-15 87.8 224 32.6
ECA234G3857 Erigeron canadensis HOM05D003020 ORTHO05D003226 2.2e-15 87.0 245 31.0
TAR626G0085 Trochodendron aralioides HOM05D003020 ORTHO05D003226 5.0e-15 85.9 217 32.3
TAR626G1849 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.6e-13 80.9 231 32.5
TAR383G0288 Trochodendron aralioides HOM05D003020 ORTHO05D003226 2.1e-13 80.5 239 32.6
BcaNung00532 Brassica carinata HOM05D003020 ORTHO05D003226 1.0e-12 78.2 223 31.4
Migut.K00242 Erythranthe guttata HOM05D003020 ORTHO05D003226 1.0e-12 78.2 257 28.8
FAN10G0626 Fragaria x ananassa HOM05D003020 ORTHO05D003226 6.8e-12 75.5 199 34.2
CiPaw.07G071600 Carya illinoinensis HOM05D003020 ORTHO05D003226 1.2e-11 74.7 228 29.8
FAN03G1700 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.5e-11 74.3 199 34.2
FAN06G0496 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.5e-11 74.3 253 30.4
FvH4_7g20070 Fragaria vesca HOM05D003020 ORTHO05D003226 2.0e-11 73.9 253 30.4
Prupe.2G217400 Prunus persica HOM05D003020 ORTHO05D003226 2.0e-11 73.9 236 30.1
Sabra10G0168900 Salix brachista HOM05D003020 ORTHO05D003226 4.4e-11 72.8 218 30.7
PGR044G1634 Punica granatum HOM05D003020 ORTHO05D003226 5.7e-11 72.4 268 31.7
QL08p056680 Quercus lobata HOM05D003020 ORTHO05D003226 5.7e-11 72.4 246 30.1
Potri.008G043300 Populus trichocarpa HOM05D003020 ORTHO05D003226 1.7e-10 70.9 230 31.3
CiPaw.02G176000 Carya illinoinensis HOM05D003020 ORTHO05D003226 2.8e-10 70.1 228 30.7
Potri.010G218300 Populus trichocarpa HOM05D003020 ORTHO05D003226 1.1e-09 68.2 232 29.3
RcHm_v2.0_Chr1g0364021 Rosa chinensis HOM05D003020 ORTHO05D003226 2.4e-09 67.0 197 31.0
Duzib106G1942 Durio zibethinus HOM05D003020 ORTHO05D003226 4.1e-09 66.2 246 28.5
Eucgr.J01120 Eucalyptus grandis HOM05D003020 ORTHO05D003226 9.1e-09 65.1 235 30.2
AUR62021300 Chenopodium quinoa HOM05D003020 ORTHO05D003226 1.2e-08 64.7 190 34.2
Hma1.2p1_0453F.1_g156030 Hydrangea macrophylla HOM05D003020 ORTHO05D003226 1.2e-08 64.7 185 33.0
Haze_16927 Corylus avellana HOM05D003020 ORTHO05D003226 1.6e-08 64.3 234 28.2
Dinv11796 Davidia involucrata HOM05D000336 ORTHO05D002705 1.6e-08 64.3 237 27.8
SGA_v2.0_scaffold17G07929 Striga asiatica HOM05D003020 ORTHO05D003226 1.6e-08 64.3 248 31.0
Manes.10G043600 Manihot esculenta HOM05D003020 ORTHO05D003226 2.0e-08 63.9 239 28.0
VMungo0720G0200 Vigna mungo HOM05D003020 ORTHO05D003226 2.0e-08 63.9 239 32.2
AUR62033218 Chenopodium quinoa HOM05D000002 ORTHO05D000001 2.7e-08 63.5 205 34.1
Eucgr.J01114 Eucalyptus grandis HOM05D003020 ORTHO05D003226 2.7e-08 63.5 203 32.0
PSO170G3450 Papaver somniferum HOM05D003020 ORTHO05D003226 2.7e-08 63.5 235 29.4
Sabra08G0029900 Salix brachista HOM05D003020 ORTHO05D003226 2.7e-08 63.5 223 28.7
Ah.09g229890 Amaranthus hybridus HOM05D003020 ORTHO05D003226 4.5e-08 62.8 188 33.5
ATR0580G303 Amborella trichopoda HOM05D003020 ORTHO05D003226 4.5e-08 62.8 223 29.6
Phvul.007G092400 Phaseolus vulgaris HOM05D003020 ORTHO05D003226 5.9e-08 62.4 234 29.5
CiPaw.01G275700 Carya illinoinensis HOM05D003020 ORTHO05D003226 7.7e-08 62.0 206 27.2
Cpa.g.sc53.28 Carica papaya HOM05D003020 ORTHO05D003226 1.0e-07 61.6 237 27.4
Cfa001601 Carpinus fangiana HOM05D003020 ORTHO05D003226 1.7e-07 60.8 236 29.2
FvH4_7g20060 Fragaria vesca HOM05D003020 ORTHO05D003226 2.2e-07 60.5 192 32.8
FAN06G2932 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.2e-07 60.5 192 32.8
Dinv31354 Davidia involucrata HOM05D003020 ORTHO05D003226 2.9e-07 60.1 228 26.8
Thecc.10G069300 Theobroma cacao HOM05D003020 ORTHO05D003226 2.9e-07 60.1 255 27.1
FAN01G0050 Fragaria x ananassa HOM05D003020 ORTHO05D003226 3.8e-07 59.7 190 31.6
FAN01G2565 Fragaria x ananassa HOM05D003020 ORTHO05D003226 3.8e-07 59.7 190 31.6
EL10Ac8g18285 Beta vulgaris HOM05D003020 ORTHO05D003226 7.2e-06 55.5 152 33.6


User provided reference genes

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