Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 6.4e-228 793.9 445 100.0
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 8.7e-217 756.9 445 93.3
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 1.7e-191 672.9 448 77.0
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 4.1e-190 668.3 447 76.3
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 7.7e-189 664.1 447 76.3
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 3.6e-186 655.2 447 75.6
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 7.9e-186 654.1 447 75.2
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 7.9e-186 654.1 447 75.6
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 1.1e-182 643.7 462 72.3
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 7.2e-179 630.9 448 71.7
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 3.6e-178 628.6 448 71.2
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 3.7e-175 618.6 448 72.8
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 6.3e-175 617.8 447 72.0
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 8.2e-175 617.5 448 70.8
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 3.1e-174 615.5 452 70.1
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.0e-172 610.5 447 71.6
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 2.9e-172 609.0 448 76.6
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 1.6e-170 603.2 435 72.4
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 3.6e-170 602.1 455 70.1
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 4.7e-170 601.7 431 75.2
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 1.3e-167 593.6 447 69.4
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 2.8e-167 592.4 447 68.5
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 1.8e-166 589.7 457 67.6
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 2.4e-166 589.3 447 68.7
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 4.1e-166 588.6 448 68.5
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 7.0e-166 587.8 462 66.7
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 1.0e-164 583.9 446 68.8
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 5.5e-163 578.2 448 69.9
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 4.0e-161 572.0 420 69.3
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 7.5e-160 567.8 449 67.7
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 1.7e-159 566.6 446 65.5
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 6.3e-159 564.7 403 70.2
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.8e-158 563.1 468 63.7
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 7.0e-158 561.2 418 69.4
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 1.6e-157 560.1 447 65.5
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 7.7e-157 557.8 427 66.5
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 1.7e-156 556.6 447 65.3
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 2.3e-156 556.2 451 64.5
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 2.3e-156 556.2 429 67.4
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 2.9e-156 555.8 422 68.0
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 6.6e-156 554.7 427 67.7
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 8.6e-156 554.3 354 78.0
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 3.3e-155 552.4 412 68.7
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 7.2e-155 551.2 445 62.7
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 9.5e-155 550.8 403 69.2
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 6.1e-154 548.1 424 68.2
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 1.0e-153 547.4 447 65.5
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 1.8e-153 546.6 447 63.8
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 3.0e-153 545.8 424 66.3
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 4.0e-153 545.4 459 62.1
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 6.8e-153 544.7 447 66.2
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 8.9e-153 544.3 433 67.7
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 8.9e-153 544.3 424 66.0
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 3.4e-152 542.3 450 67.3
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 5.7e-152 541.6 473 66.6
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 9.8e-152 540.8 352 77.6
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 3.7e-151 538.9 476 62.4
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 1.4e-150 537.0 451 64.3
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 1.4e-150 537.0 420 71.0
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 1.4e-150 537.0 452 66.2
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 7.0e-150 534.6 452 63.7
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 9.2e-150 534.3 357 74.5
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 2.7e-149 532.7 414 66.4
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 2.3e-148 529.6 448 61.2
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 6.6e-148 528.1 376 72.9
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 1.1e-147 527.3 451 62.1
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 2.5e-147 526.2 452 66.4
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 2.5e-147 526.2 504 56.7
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 4.3e-147 525.4 446 63.7
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 5.6e-147 525.0 416 64.9
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 9.5e-147 524.2 451 65.4
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 1.0e-145 520.8 451 65.2
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 2.3e-145 519.6 325 77.5
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 3.1e-145 519.2 450 60.9
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 3.1e-145 519.2 428 64.5
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.2e-144 517.3 454 61.0
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 2.6e-144 516.2 452 60.4
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 4.4e-144 515.4 474 60.1
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 2.9e-143 512.7 479 56.2
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.9e-143 512.7 473 59.2
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 1.1e-142 510.8 418 62.0
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 5.4e-142 508.4 444 60.1
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 6.0e-141 505.0 454 60.8
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 1.0e-140 504.2 491 58.9
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.7e-140 503.4 455 60.4
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 3.9e-140 502.3 453 59.6
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 5.0e-140 501.9 382 68.3
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 8.6e-140 501.1 448 58.9
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 4.3e-139 498.8 322 74.5
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 1.8e-137 493.4 429 65.5
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 1.8e-137 493.4 429 65.5
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 3.1e-137 492.7 336 72.0
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 4.0e-137 492.3 426 60.6
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 5.2e-137 491.9 382 66.2
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 4.4e-136 488.8 423 60.0
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 7.5e-136 488.0 389 66.6
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 7.5e-136 488.0 448 62.5
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 2.9e-135 486.1 451 56.3
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 8.3e-135 484.6 459 56.6
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 1.1e-134 484.2 390 62.6
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 1.4e-134 483.8 400 62.5
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 3.2e-134 482.6 422 59.2
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 4.1e-134 482.3 425 61.4
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 9.2e-134 481.1 473 57.9
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 2.3e-132 476.5 445 57.1
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 2.3e-132 476.5 486 56.2
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 1.1e-131 474.2 447 56.4
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 4.3e-131 472.2 372 68.3
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 3.6e-130 469.2 445 57.1
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 1.1e-129 467.6 407 62.4
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 2.3e-129 466.5 445 56.9
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 4.0e-129 465.7 398 62.1
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 8.9e-129 464.5 306 74.8
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 2.2e-127 459.9 407 61.4
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 6.4e-127 458.4 391 62.4
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 1.2e-125 454.1 377 64.2
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 6.0e-125 451.8 322 71.1
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.1e-123 447.6 512 50.4
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 5.6e-123 445.3 264 84.8
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.4e-121 440.7 438 52.5
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 4.9e-119 432.2 424 56.4
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 6.4e-119 431.8 429 52.7
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.1e-118 431.0 311 68.5
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 3.2e-118 429.5 449 53.2
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 5.1e-116 422.2 427 56.9
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 1.9e-115 420.2 457 53.0
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 1.6e-114 417.2 455 51.9
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 3.1e-113 412.9 277 75.8
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 2.0e-112 410.2 403 54.6
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 1.4e-110 404.1 388 56.7
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 2.5e-107 393.3 359 56.8
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 5.6e-107 392.1 329 58.1
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 6.4e-103 378.6 344 60.2
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 6.0e-101 372.1 452 46.5
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 5.1e-100 369.0 307 64.8
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 1.8e-97 360.5 405 51.1
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 9.0e-97 358.2 404 50.7
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 1.2e-96 357.8 405 50.9
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 5.8e-96 355.5 353 55.2
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.9e-94 350.5 414 49.3
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 1.3e-92 344.4 347 50.7
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 3.0e-92 343.2 315 53.3
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 4.0e-89 332.8 430 47.2
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 4.2e-86 322.8 365 49.0
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 5.5e-86 322.4 365 49.0
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 2.1e-85 320.5 269 62.5
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 9.0e-81 305.1 207 72.9
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 1.2e-80 304.7 352 49.7
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 2.6e-80 303.5 354 48.0
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 1.0e-76 291.6 376 45.7
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 1.8e-76 290.8 447 48.1
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 6.7e-76 288.9 446 47.8
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 5.5e-62 242.7 327 41.3
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 3.4e-51 206.8 153 67.3
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 8.5e-47 192.2 141 73.0
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.5e-46 190.7 144 63.9
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 9.4e-46 188.7 200 50.0
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.1e-37 161.0 94 81.9
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 1.1e-33 148.7 145 54.5
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 2.4e-33 147.5 166 49.4
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 5.6e-30 136.3 133 56.4
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.4e-28 131.7 84 76.2
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 4.4e-27 126.7 99 60.6
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 2.2e-26 124.4 119 55.5
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 8.3e-26 122.5 148 52.0
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 9.2e-25 119.0 94 61.7
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 1.2e-24 118.6 94 63.8
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 2.7e-24 117.5 101 59.4
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 1.6e-21 108.2 72 77.8
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 1.5e-19 101.7 202 37.6
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 2.2e-18 97.8 166 38.6
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 8.3e-18 95.9 61 78.7
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 8.3e-18 95.9 96 58.3
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 9.5e-14 82.4 97 47.4
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 1.8e-12 78.2 105 41.0
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.3e-12 77.8 170 34.1
Atru.chr3.2263 Acer truncatum HOM05D003649 ORTHO05D004498 6.8e-12 76.3 62 67.7
Atru.chr3.2269 Acer truncatum HOM05D003649 ORTHO05D004498 8.9e-12 75.9 62 67.7
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 1.2e-11 75.5 54 61.1
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 1.2e-11 75.5 54 61.1
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 1.3e-10 72.0 49 65.3
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 6.4e-10 69.7 105 37.1
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 3.5e-08 63.9 84 44.0
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 6.0e-08 63.2 39 71.8
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 7.8e-08 62.8 187 31.6
SHI14588 Sapria himalayana HOM05D003649 ORTHO05D004498 3.9e-07 60.5 45 66.7
SHI14583 Sapria himalayana HOM05D003649 ORTHO05D004498 6.6e-07 59.7 63 49.2


User provided reference genes

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