Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 4.5e-65 251.1 129 100.0
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 5.5e-39 164.5 129 69.8
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 8.3e-35 150.6 118 67.8
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 9.1e-34 147.1 129 58.9
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 5.9e-33 144.4 130 66.9
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 1.3e-32 143.3 119 64.7
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 2.9e-32 142.1 127 63.8
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 8.6e-32 140.6 127 64.6
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.5e-31 139.8 119 67.2
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.5e-31 139.8 119 67.2
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 2.5e-31 139.0 132 63.6
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.2e-31 138.7 128 60.2
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 7.2e-31 137.5 128 62.5
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 9.5e-31 137.1 131 58.8
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 1.2e-30 136.7 127 60.6
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 1.6e-30 136.3 132 61.4
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.1e-30 136.0 119 65.5
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 2.8e-30 135.6 130 63.1
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 2.8e-30 135.6 129 59.7
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 2.8e-30 135.6 127 59.8
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.8e-29 132.9 123 61.8
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 8.8e-29 130.6 130 60.8
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 1.2e-28 130.2 121 59.5
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 3.4e-28 128.6 130 60.0
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 4.4e-28 128.3 123 55.3
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 4.4e-28 128.3 123 60.2
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 5.7e-28 127.9 128 57.8
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 5.7e-28 127.9 134 56.0
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 1.3e-27 126.7 129 55.8
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 1.7e-27 126.3 123 56.9
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 2.2e-27 125.9 129 58.9
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 4.9e-27 124.8 131 54.2
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 4.9e-27 124.8 129 58.1
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 8.3e-27 124.0 122 61.5
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.4e-26 123.2 128 53.9
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 1.4e-26 123.2 122 60.7
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.8e-26 122.9 124 56.5
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 2.4e-26 122.5 129 56.6
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 2.4e-26 122.5 136 51.5
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 3.1e-26 122.1 116 56.9
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 5.4e-26 121.3 137 52.6
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.2e-25 120.2 122 60.7
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 1.6e-25 119.8 116 56.0
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 2.7e-25 119.0 123 56.1
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 3.5e-25 118.6 126 54.8
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 5.9e-25 117.9 141 51.1
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 7.8e-25 117.5 139 51.1
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 1.7e-24 116.3 161 45.3
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.7e-24 116.3 128 55.5
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 2.3e-24 115.9 116 55.2
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 1.5e-23 113.2 128 57.8
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 1.9e-23 112.8 116 51.7
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.3e-23 112.1 122 57.4
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.3e-23 112.1 122 57.4
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.6e-23 111.3 122 57.4
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 7.3e-23 110.9 127 48.0
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 7.3e-23 110.9 122 53.3
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 9.5e-23 110.5 122 54.1
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 9.5e-23 110.5 122 51.6
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 1.2e-22 110.2 135 48.9
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 1.6e-22 109.8 127 55.1
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.6e-22 109.8 130 56.2
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 2.8e-22 109.0 126 54.8
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 2.8e-22 109.0 137 48.2
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 3.6e-22 108.6 127 52.8
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 3.6e-22 108.6 127 52.8
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 6.1e-22 107.8 126 54.8
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 8.0e-22 107.5 125 52.0
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 1.0e-21 107.1 129 54.3
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 1.4e-21 106.7 147 46.9
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 2.3e-21 105.9 136 49.3
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 3.0e-21 105.5 126 54.0
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 3.0e-21 105.5 126 54.0
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 3.0e-21 105.5 126 54.0
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 4.0e-21 105.1 127 53.5
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 5.2e-21 104.8 118 49.2
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 6.8e-21 104.4 124 54.0
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 1.2e-20 103.6 127 54.3
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 1.2e-20 103.6 125 52.0
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.2e-20 103.6 115 56.5
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 1.5e-20 103.2 127 52.8
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 2.0e-20 102.8 123 47.2
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 2.0e-20 102.8 127 54.3
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 2.6e-20 102.4 127 52.8
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 2.6e-20 102.4 115 50.4
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.4e-20 101.7 123 48.0
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.7e-20 101.3 122 44.3
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 7.5e-20 100.9 119 49.6
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 7.5e-20 100.9 114 53.5
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.3e-19 100.1 121 44.6
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 1.3e-19 100.1 138 44.2
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.3e-19 100.1 123 46.3
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.7e-19 99.8 114 50.9
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 2.2e-19 99.4 125 48.8
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 2.2e-19 99.4 124 46.0
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 6.4e-19 97.8 118 49.2
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.1e-18 97.1 133 50.4
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 1.4e-18 96.7 125 50.4
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 1.4e-18 96.7 115 43.5
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 1.4e-18 96.7 138 43.5
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.4e-18 96.7 116 48.3
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 2.4e-18 95.9 121 49.6
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 3.2e-18 95.5 126 42.1
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.1e-18 95.1 99 60.6
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 4.1e-18 95.1 119 46.2
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 5.4e-18 94.7 122 53.3
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 7.0e-18 94.4 113 47.8
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.2e-17 93.6 123 47.2
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 1.2e-17 93.6 126 45.2
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.6e-17 93.2 116 45.7
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 2.0e-17 92.8 123 43.1
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 2.7e-17 92.4 126 49.2
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 2.7e-17 92.4 123 43.1
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 2.7e-17 92.4 125 41.6
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 4.6e-17 91.7 112 45.5
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 5.9e-17 91.3 115 46.1
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 5.9e-17 91.3 123 41.5
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 7.8e-17 90.9 123 44.7
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.0e-16 90.5 99 58.6
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 1.0e-16 90.5 114 47.4
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 1.3e-16 90.1 126 42.1
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 1.3e-16 90.1 135 43.7
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.3e-16 89.4 125 44.0
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 2.3e-16 89.4 125 44.0
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 3.9e-16 88.6 114 50.9
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.5e-15 86.7 107 46.7
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.5e-15 86.7 135 39.3
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 1.5e-15 86.7 95 51.6
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 1.9e-15 86.3 118 43.2
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 3.3e-15 85.5 110 47.3
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 4.3e-15 85.1 124 42.7
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 5.6e-15 84.7 110 40.9
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 7.3e-15 84.3 133 42.1
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 1.2e-14 83.6 129 42.6
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.6e-14 83.2 135 42.2
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.1e-14 82.8 127 47.2
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.4e-13 80.1 111 41.4
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 2.3e-13 79.3 122 42.6
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.3e-13 79.3 111 41.4
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 1.5e-12 76.6 127 38.6
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 1.5e-12 76.6 89 53.9
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 1.5e-12 76.6 89 53.9
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 2.0e-12 76.3 164 36.0
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 3.4e-12 75.5 97 49.5
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 4.4e-12 75.1 117 38.5
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 5.8e-12 74.7 136 39.0
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 7.5e-12 74.3 112 39.3
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 2.9e-11 72.4 138 39.1
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 3.7e-11 72.0 126 42.9
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 4.9e-11 71.6 123 35.8
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 8.3e-11 70.9 87 44.8
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 2.4e-10 69.3 134 40.3
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 4.1e-10 68.6 141 38.3
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 9.2e-10 67.4 166 32.5
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.2e-09 67.0 129 34.1
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.6e-09 66.6 88 43.2
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 7.8e-09 64.3 162 32.1
Lj1g0012048 Lotus japonicus HOM05D021496 ORTHO05D022761 3.0e-08 62.4 103 39.8
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 3.3e-07 58.9 143 33.6
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 5.6e-07 58.2 125 37.6
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 5.6e-07 58.2 117 32.5
Glyma.04G075600 Glycine max HOM05D021496 ORTHO05D022761 9.5e-07 57.4 101 37.6
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 9.5e-07 57.4 150 32.0
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 1.6e-06 56.6 125 38.4
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 4.7e-06 55.1 100 41.0


User provided reference genes

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