Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 2.8e-231 805.1 445 100.0
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 1.1e-216 756.5 445 93.3
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 2.4e-190 669.1 448 77.2
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 2.2e-188 662.5 448 76.3
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 6.1e-186 654.4 447 76.1
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 4.1e-182 641.7 447 74.7
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 5.3e-182 641.3 447 74.5
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 9.1e-182 640.6 447 74.7
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 5.9e-181 637.9 465 71.8
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 8.5e-180 634.0 448 72.1
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.5e-179 632.5 448 72.5
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 6.7e-177 624.4 448 71.7
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 2.6e-176 622.5 448 73.2
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 3.3e-176 622.1 447 74.3
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 5.7e-176 621.3 452 70.8
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 4.5e-173 611.7 447 72.3
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 1.3e-172 610.1 431 76.6
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 1.6e-170 603.2 446 72.4
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 1.0e-169 600.5 448 73.2
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.8e-169 599.7 447 69.1
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 2.6e-168 595.9 447 69.8
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 3.3e-168 595.5 436 72.2
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 4.4e-168 595.1 455 69.9
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 1.3e-167 593.6 462 67.3
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 2.8e-167 592.4 447 68.9
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 8.3e-167 590.9 457 67.8
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 2.2e-164 582.8 420 70.2
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 8.5e-164 580.9 448 68.3
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 8.0e-162 574.3 418 70.8
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 1.5e-160 570.1 448 67.4
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 5.7e-160 568.2 403 71.7
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 6.3e-159 564.7 430 68.4
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 8.3e-159 564.3 468 64.3
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 1.4e-158 563.5 448 65.8
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 7.0e-158 561.2 448 65.4
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 2.0e-157 559.7 449 65.9
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 5.9e-157 558.1 427 66.7
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.0e-156 557.4 404 70.3
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 1.3e-156 557.0 451 64.5
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 5.0e-156 555.1 427 67.9
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 6.6e-156 554.7 422 68.2
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 3.3e-155 552.4 473 67.9
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 1.2e-154 550.4 446 64.6
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 2.1e-154 549.7 426 68.3
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 4.7e-154 548.5 354 77.1
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 6.1e-154 548.1 414 67.9
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 8.0e-154 547.7 412 68.4
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 2.3e-153 546.2 433 68.8
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 4.0e-153 545.4 447 65.5
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 4.0e-153 545.4 371 76.0
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 5.2e-153 545.0 459 62.1
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 5.2e-153 545.0 427 66.3
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.5e-152 543.5 427 66.0
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 1.5e-152 543.5 452 66.6
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 2.6e-152 542.7 445 62.0
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 5.7e-152 541.6 447 66.2
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 9.8e-152 540.8 378 77.8
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 1.7e-151 540.0 446 63.0
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 2.4e-150 536.2 450 66.7
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 2.4e-150 536.2 411 66.2
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 5.4e-150 535.0 451 63.4
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 9.2e-150 534.3 452 64.4
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 3.5e-149 532.3 451 64.5
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 3.5e-149 532.3 452 64.6
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 1.0e-148 530.8 476 61.6
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 2.3e-148 529.6 420 69.3
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 7.3e-147 524.6 446 64.1
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 9.5e-147 524.2 448 61.2
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 2.3e-145 519.6 325 77.5
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 4.0e-145 518.8 454 64.1
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 4.0e-145 518.8 506 56.7
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 5.2e-145 518.5 451 65.0
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 5.8e-144 515.0 451 64.5
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 9.8e-144 514.2 456 61.6
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 9.8e-144 514.2 380 70.5
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 3.7e-143 512.3 428 64.3
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 4.9e-143 511.9 450 60.7
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 8.3e-143 511.1 474 59.5
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 2.4e-142 509.6 452 60.2
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 3.5e-141 505.8 479 55.7
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 1.0e-140 504.2 491 59.3
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.0e-140 504.2 474 58.6
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 2.3e-140 503.1 407 63.4
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.1e-139 500.7 454 60.1
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 1.9e-139 500.0 419 61.3
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 4.3e-139 498.8 322 74.5
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 1.2e-138 497.3 443 58.9
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 4.7e-138 495.4 455 59.6
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.8e-137 493.4 454 59.0
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 3.1e-137 492.7 336 72.0
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 5.2e-137 491.9 382 66.5
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.0e-136 490.0 425 60.5
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 3.4e-136 489.2 427 61.1
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 4.4e-136 488.8 429 64.8
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 4.4e-136 488.8 429 64.8
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 6.4e-135 485.0 389 66.6
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 6.4e-135 485.0 462 56.5
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 1.4e-134 483.8 400 63.0
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 7.0e-134 481.5 451 55.9
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 6.0e-133 478.4 374 64.7
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 7.8e-133 478.0 486 56.6
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 1.3e-132 477.2 428 60.7
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 3.0e-132 476.1 448 59.8
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 3.3e-131 472.6 423 58.6
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 4.3e-131 472.2 473 57.3
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 4.7e-130 468.8 447 56.4
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 4.7e-130 468.8 377 65.5
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 8.1e-130 468.0 445 57.3
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 5.2e-129 465.3 446 57.0
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 5.2e-129 465.3 445 57.1
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 6.8e-129 464.9 407 61.9
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 1.2e-128 464.2 306 74.8
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 2.6e-128 463.0 407 62.4
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 9.9e-128 461.1 398 58.8
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 2.2e-127 459.9 372 64.8
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 6.4e-127 458.4 322 72.4
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 3.2e-126 456.1 407 61.4
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 3.0e-124 449.5 511 50.5
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.2e-122 444.1 412 56.3
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.6e-122 443.7 264 84.1
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 4.4e-120 435.6 412 55.3
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 7.1e-118 428.3 311 68.5
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 9.2e-118 427.9 424 56.1
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 1.2e-117 427.6 449 52.8
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 7.3e-115 418.3 340 60.0
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 2.1e-114 416.8 429 53.4
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 4.8e-114 415.6 277 76.5
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 6.2e-114 415.2 405 55.1
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 2.4e-113 413.3 455 51.2
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 3.4e-112 409.5 394 57.4
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 4.3e-107 392.5 329 58.7
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 6.9e-105 385.2 359 56.0
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 1.2e-101 374.4 344 59.9
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 4.6e-101 372.5 452 46.0
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 3.0e-100 369.8 405 52.3
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 2.5e-99 366.7 405 52.1
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 4.3e-99 365.9 404 52.0
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 7.4e-99 365.2 307 64.5
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 6.9e-97 358.6 414 50.0
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 1.2e-96 357.8 353 55.5
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 3.5e-93 346.3 359 49.6
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 8.7e-92 341.7 430 48.4
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 8.7e-92 341.7 315 53.0
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 3.4e-88 329.7 365 50.4
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 4.5e-88 329.3 365 50.4
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 1.6e-85 320.9 269 63.6
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 7.4e-83 312.0 352 51.1
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 2.2e-82 310.5 354 49.4
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 6.9e-81 305.4 207 73.4
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 1.0e-76 291.6 376 46.0
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 2.3e-76 290.4 446 47.5
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 2.3e-76 290.4 447 47.7
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 3.0e-60 236.9 466 34.1
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 3.4e-51 206.8 153 67.3
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 8.5e-47 192.2 141 73.0
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 5.5e-46 189.5 144 63.2
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 7.2e-46 189.1 200 50.5
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.1e-37 161.0 94 81.9
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 1.1e-33 148.7 145 54.5
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 1.8e-33 147.9 166 50.0
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 5.6e-30 136.3 133 56.4
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.4e-28 131.7 84 76.2
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 4.4e-27 126.7 99 60.6
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 5.8e-27 126.3 148 53.4
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 2.2e-26 124.4 119 55.5
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 9.2e-25 119.0 94 61.7
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 1.2e-24 118.6 94 63.8
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 2.7e-24 117.5 101 59.4
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 1.6e-21 108.2 72 77.8
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 1.1e-20 105.5 202 38.6
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 2.6e-19 100.9 216 34.3
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 8.3e-18 95.9 61 78.7
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 8.3e-18 95.9 96 58.3
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 9.5e-14 82.4 97 47.4
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.8e-13 80.9 157 36.3
Atru.chr3.2263 Acer truncatum HOM05D003649 ORTHO05D004498 3.1e-12 77.4 76 61.8
Atru.chr3.2269 Acer truncatum HOM05D003649 ORTHO05D004498 3.1e-12 77.4 76 61.8
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 6.8e-12 76.3 199 32.2
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 1.2e-11 75.5 54 61.1
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 1.2e-11 75.5 54 61.1
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 1.3e-10 72.0 49 65.3
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 8.4e-10 69.3 105 37.1
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 1.4e-09 68.6 187 32.1
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 3.5e-08 63.9 84 44.0
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 4.6e-08 63.5 39 74.4
SHI14588 Sapria himalayana HOM05D003649 ORTHO05D004498 6.6e-07 59.7 45 66.7
SHI14583 Sapria himalayana HOM05D003649 ORTHO05D004498 8.6e-07 59.3 103 38.8


User provided reference genes

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