Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G149022 Manihot esculenta HOM05D006400 ORTHO05D008039 6.1e-225 783.9 409 100.0
Manes.02G042000 Manihot esculenta HOM05D006400 ORTHO05D008039 1.8e-83 313.9 384 55.5
SHI09587 Sapria himalayana HOM05D006400 ORTHO05D008039 8.9e-75 285.0 385 45.7
RcHm_v2.0_Chr7g0204361 Rosa chinensis HOM05D006400 ORTHO05D008039 6.6e-70 268.9 420 39.0
Sabra01G0124300 Salix brachista HOM05D006400 ORTHO05D008039 6.6e-70 268.9 397 45.1
Sabra01G0124400 Salix brachista HOM05D006400 ORTHO05D008039 6.6e-70 268.9 397 45.1
Sabra01G0124500 Salix brachista HOM05D006400 ORTHO05D008039 6.6e-70 268.9 397 45.1
Prupe.4G276000 Prunus persica HOM05D006400 ORTHO05D008039 1.9e-69 267.3 400 44.5
Potri.001G154901 Populus trichocarpa HOM05D006400 ORTHO05D008039 4.7e-68 262.7 479 40.5
CARHR174040 Cardamine hirsuta HOM05D006400 ORTHO05D008039 1.7e-65 254.2 394 37.8
Thhalv10000870m.g Eutrema salsugineum HOM05D006400 ORTHO05D008039 1.7e-65 254.2 406 37.9
A06p45130 Brassica napus HOM05D006400 ORTHO05D008039 1.4e-64 251.1 398 38.7
BraA06t27383Z Brassica rapa HOM05D006400 ORTHO05D008039 1.4e-64 251.1 398 38.7
Gohir.A02G148300 Gossypium hirsutum HOM05D006400 ORTHO05D008039 5.4e-64 249.2 396 43.7
BolC7t43646H Brassica oleracea HOM05D006400 ORTHO05D008039 9.2e-64 248.4 398 37.7
Carub.0008s0042 Capsella rubella HOM05D006400 ORTHO05D008039 6.0e-63 245.7 393 36.9
AL8G10680 Arabidopsis lyrata HOM05D006400 ORTHO05D008039 2.3e-62 243.8 393 37.4
C07p31010 Brassica napus HOM05D006400 ORTHO05D008039 3.0e-62 243.4 398 37.7
Haze_02836 Corylus avellana HOM05D006400 ORTHO05D008039 2.5e-61 240.4 398 41.7
VMungo1127G0679 Vigna mungo HOM05D006400 ORTHO05D008039 3.3e-61 240.0 405 40.2
Aa31csc39G30 Aethionema arabicum HOM05D006400 ORTHO05D008039 1.6e-60 237.7 397 39.3
BcaC06g31395 Brassica carinata HOM05D006400 ORTHO05D008039 4.7e-60 236.1 390 40.3
Phvul.011G001300 Phaseolus vulgaris HOM05D006400 ORTHO05D008039 8.1e-60 235.3 413 37.5
TAR628G0792 Trochodendron aralioides HOM05D006400 ORTHO05D008039 1.1e-59 235.0 398 41.0
Lj3C13G5 Lonicera japonica HOM05D006400 ORTHO05D008039 3.1e-59 233.4 413 38.5
Sp2g12080 Schrenkiella parvula HOM05D006400 ORTHO05D008039 1.5e-58 231.1 402 36.1
Gorai.003G033700 Gossypium raimondii HOM05D006400 ORTHO05D008039 4.4e-58 229.6 396 41.4
Gorai.007G029300 Gossypium raimondii HOM05D006400 ORTHO05D008039 4.4e-58 229.6 396 40.2
Gohir.D03G032200 Gossypium hirsutum HOM05D006400 ORTHO05D008039 9.9e-58 228.4 396 40.9
CAN.G1312.18 Capsicum annuum HOM05D006400 ORTHO05D008039 1.3e-57 228.0 402 37.8
THA.LOC104810088 Tarenaya hassleriana HOM05D006400 ORTHO05D008039 3.8e-57 226.5 392 35.7
Gohir.D11G026800 Gossypium hirsutum HOM05D006400 ORTHO05D008039 4.9e-57 226.1 396 39.9
Glyma.08G238900 Glycine max HOM05D006400 ORTHO05D008039 1.1e-56 224.9 421 36.3
Glyma.15G265000 Glycine max HOM05D006400 ORTHO05D008039 1.4e-56 224.6 408 36.8
TAR628G0558 Trochodendron aralioides HOM05D006400 ORTHO05D008039 1.9e-56 224.2 398 40.2
AT5G47360 Arabidopsis thaliana HOM05D006400 ORTHO05D008039 5.1e-54 216.1 398 34.9
QL09p046276 Quercus lobata HOM05D006400 ORTHO05D008039 2.5e-53 213.8 394 40.4
Atru.chr9.1257 Acer truncatum HOM05D006400 ORTHO05D008039 8.1e-52 208.8 398 38.7
MD06G1055200 Malus domestica HOM05D006400 ORTHO05D008039 1.1e-51 208.4 413 35.8
Ca_22891_v3 Cicer arietinum L. HOM05D006400 ORTHO05D008039 4.0e-51 206.5 435 36.6
PGR042G3373 Punica granatum HOM05D006400 ORTHO05D008039 4.0e-51 206.5 477 34.6
Lalb_Chr09g0323451 Lupinus albus HOM05D006400 ORTHO05D008039 9.0e-51 205.3 408 35.5
Lj3g0022967 Lotus japonicus HOM05D006400 ORTHO05D008039 1.5e-50 204.5 395 35.4
Thecc.03G246700 Theobroma cacao HOM05D006400 ORTHO05D008039 1.5e-50 204.5 456 36.8
Ah.01g005640 Amaranthus hybridus HOM05D006400 ORTHO05D008039 4.9e-49 199.5 392 35.7
CANSAT25G0610 Cannabis sativa HOM05D006400 ORTHO05D008039 4.9e-49 199.5 396 37.6
vmacro00015 Vaccinium macrocarpon HOM05D006400 ORTHO05D008039 1.9e-48 197.6 428 36.2
Sed0010566 Sechium edule HOM05D006400 ORTHO05D008039 2.4e-48 197.2 415 34.9
Solyc08g078280.1 Solanum lycopersicum HOM05D006400 ORTHO05D008039 2.4e-48 197.2 397 36.3
DCAR_009350 Daucus carota HOM05D006400 ORTHO05D008039 5.4e-48 196.1 401 36.9
Migut.N02973 Erythranthe guttata HOM05D006400 ORTHO05D008039 9.3e-48 195.3 398 30.2
Oeu052953.1 Olea europaea HOM05D006400 ORTHO05D008039 2.1e-47 194.1 396 35.9
Ciclev10019985m.g Citrus clementina HOM05D006400 ORTHO05D008039 2.7e-47 193.7 398 36.7
MD04G1061400 Malus domestica HOM05D006400 ORTHO05D008039 3.5e-47 193.4 397 37.0
TWI15G0916 Tripterygium wilfordii HOM05D006400 ORTHO05D008039 7.9e-47 192.2 397 36.8
EL10Ac5g12550 Beta vulgaris HOM05D006400 ORTHO05D008039 1.3e-46 191.4 385 37.7
CSS0025678 Camellia sinensis var. sinensis HOM05D006400 ORTHO05D008039 1.3e-46 191.4 479 34.4
Cpa.g.sc89.62 Carica papaya HOM05D006400 ORTHO05D008039 3.9e-46 189.9 397 36.0
COL.COLO4_37104 Corchorus olitorius HOM05D006400 ORTHO05D008039 3.9e-46 189.9 382 38.0
BcaC06g34259 Brassica carinata HOM05D006400 ORTHO05D008039 2.5e-45 187.2 341 34.6
CsaV3_2G011310 Cucumis sativus L. HOM05D006400 ORTHO05D008039 9.6e-45 185.3 397 34.5
FAN18G2780 Fragaria x ananassa HOM05D006400 ORTHO05D008039 1.6e-44 184.5 394 35.0
FvH4_5g19630 Fragaria vesca HOM05D006400 ORTHO05D008039 4.8e-44 183.0 394 35.5
Dinv25846 Davidia involucrata HOM05D006400 ORTHO05D008039 1.4e-43 181.4 399 35.3
ClCG06G010030 Citrullus lanatus HOM05D006400 ORTHO05D008039 2.4e-43 180.6 397 33.5
arahy.Tifrunner.gnm1.ann1.S7MQ4D Arachis hypogaea HOM05D006400 ORTHO05D008039 9.0e-43 178.7 394 29.9
FAN08G3355 Fragaria x ananassa HOM05D006400 ORTHO05D008039 1.5e-42 177.9 394 34.3
Medtr4g021220 Medicago truncatula HOM05D006400 ORTHO05D008039 4.5e-42 176.4 387 33.9
AUR62035870 Chenopodium quinoa HOM05D006400 ORTHO05D008039 3.8e-41 173.3 324 34.0
GSVIVG01007151001 Vitis vinifera HOM05D006400 ORTHO05D008039 1.1e-40 171.8 399 35.1
Gohir.A11G027600 Gossypium hirsutum HOM05D006400 ORTHO05D008039 1.4e-40 171.4 293 42.0
PGSC0003DMG400039297 Solanum tuberosum HOM05D006400 ORTHO05D008039 4.2e-40 169.9 397 30.5
Hma1.2p1_1196F.1_g266040 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 7.1e-40 169.1 357 37.0
Eucgr.E00397 Eucalyptus grandis HOM05D006400 ORTHO05D008039 2.7e-39 167.2 396 34.1
Nitab4.5_0002601g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 6.0e-39 166.0 483 28.2
MSTRG.24505 Avicennia marina HOM05D006400 ORTHO05D008039 1.0e-38 165.2 400 33.2
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 1.3e-36 158.3 349 37.5
SGA_v2.0_scaffold54G19637 Striga asiatica HOM05D006400 ORTHO05D008039 1.3e-36 158.3 399 30.3
MELO3C008512.2 Cucumis melo HOM05D006400 ORTHO05D008039 6.2e-36 156.0 397 30.7
Cc08_g12000 Coffea canephora HOM05D006400 ORTHO05D008039 1.1e-35 155.2 474 30.2
Duzib068G0402 Durio zibethinus HOM05D006400 ORTHO05D008039 3.1e-35 153.7 346 36.7
CiPaw.16G085600 Carya illinoinensis HOM05D006400 ORTHO05D008039 4.0e-35 153.3 398 32.7
Sopen08g026780 Solanum pennellii HOM05D006400 ORTHO05D008039 4.0e-35 153.3 397 32.2
Gohir.D02G148280 Gossypium hirsutum HOM05D006400 ORTHO05D008039 5.3e-35 152.9 247 44.1
Gorai.005G166300 Gossypium raimondii HOM05D006400 ORTHO05D008039 6.9e-35 152.5 249 44.6
Aqoxy3G01604 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 4.5e-34 149.8 394 32.7
AUR62018329 Chenopodium quinoa HOM05D006400 ORTHO05D008039 4.5e-34 149.8 306 37.9
AUR62035872 Chenopodium quinoa HOM05D000268 ORTHO05D008039 7.6e-34 149.1 307 36.5
PGR042G3592 Punica granatum HOM05D006400 ORTHO05D008039 3.8e-33 146.7 430 30.7
TPR.G5570 Trifolium pratense HOM05D006400 ORTHO05D008039 1.4e-32 144.8 413 29.1
HanXRQChr17g0533241 Helianthus annuus HOM05D006400 ORTHO05D008039 5.5e-32 142.9 391 32.5
BcaC06g31398 Brassica carinata HOM05D006400 ORTHO05D008039 1.6e-31 141.4 187 40.6
Nitab4.5_0007283g0050 Nicotiana tabacum HOM05D006400 ORTHO05D008039 3.5e-31 140.2 433 30.7
Sc01g0008230 Simmondsia chinensis HOM05D006400 ORTHO05D008039 3.5e-31 140.2 141 50.4
Lsat_1_v5_gn_4_109281 Lactuca sativa HOM05D006400 ORTHO05D008039 3.0e-30 137.1 375 32.8
Rhsim13G0212900 Rhododendron simsii HOM05D006400 ORTHO05D008039 3.9e-30 136.7 371 32.6
Gohir.A03G125450 Gossypium hirsutum HOM05D006400 ORTHO05D008039 6.7e-30 136.0 180 43.9
Peaxi162Scf00346g00056 Petunia axillaris HOM05D006400 ORTHO05D008039 1.9e-29 134.4 454 28.6
VMungo0251G3116 Vigna mungo HOM05D006400 ORTHO05D008039 1.9e-29 134.4 144 49.3
Peaxi162Scf00017g03140 Petunia axillaris HOM05D006400 ORTHO05D008039 5.7e-29 132.9 412 30.6
QL01p026672 Quercus lobata HOM05D006400 ORTHO05D008039 1.1e-27 128.6 177 43.5
DCAR_028626 Daucus carota HOM05D006400 ORTHO05D008039 3.1e-27 127.1 118 54.2
Nitab4.5_0010304g0010 Nicotiana tabacum HOM05D006400 ORTHO05D008039 3.4e-26 123.6 459 29.4
MBI10_g34776_MAGBIO Magnolia biondii HOM05D000931 ORTHO05D001924 1.3e-25 121.7 404 29.0
Hma1.2p1_1196F.1_g266060 Hydrangea macrophylla HOM05D006400 ORTHO05D008039 1.2e-23 115.2 93 60.2
ECA236G1262 Erigeron canadensis HOM05D006400 ORTHO05D008039 1.6e-23 114.8 116 53.4
Aqoxy6G02102 Aquilegia oxysepala HOM05D006400 ORTHO05D008039 1.0e-22 112.1 195 33.8
Hund12818 Selenicereus undatus HOM05D006400 ORTHO05D008039 1.0e-22 112.1 397 27.7
Nn4g24039 Nelumbo nucifera HOM05D006400 ORTHO05D008039 1.8e-22 111.3 101 52.5
SalBow1G4333 Salvia bowleyana HOM05D006400 ORTHO05D008039 3.9e-22 110.2 389 27.2
Actinidia14396 Actinidia chinensis HOM05D006400 ORTHO05D008039 4.3e-21 106.7 150 42.7
FAN13G1818 Fragaria x ananassa HOM05D006400 ORTHO05D008039 1.3e-20 105.1 103 53.4
ATR0697G201 Amborella trichopoda HOM05D006400 ORTHO05D008039 8.2e-20 102.4 455 28.1
Psat7g239440 Pisum sativum HOM05D006400 ORTHO05D008039 1.9e-16 91.3 198 39.4
Zm00001eb009290 Zea mays HOM05D006400 ORTHO05D008039 2.5e-16 90.9 189 32.3
CDE05G0339 Ceratophyllum demersum HOM05D006400 ORTHO05D008039 4.6e-15 86.7 237 27.8
TPR.G39692 Trifolium pratense HOM05D006400 ORTHO05D008039 2.5e-13 80.9 81 42.0
Os03g0225300 Oryza sativa ssp. japonica HOM05D006400 ORTHO05D008039 4.3e-13 80.1 137 35.0
PSO541G3795 Papaver somniferum HOM05D006400 ORTHO05D008039 7.4e-13 79.3 111 40.5
Lsat_1_v5_gn_4_109201 Lactuca sativa HOM05D006400 ORTHO05D008039 6.3e-12 76.3 76 51.3
Peaxi162Scf00242g00094 Petunia axillaris HOM05D006400 ORTHO05D008039 4.1e-11 73.6 87 44.8
AUR62007125 Chenopodium quinoa HOM05D000093 ORTHO05D007866 9.1e-11 72.4 234 26.5
FAN04G1593 Fragaria x ananassa HOM05D006400 ORTHO05D008039 2.6e-10 70.9 58 56.9
Medtr8g463610 Medicago truncatula HOM05D006503 ORTHO05D008116 2.2e-09 67.8 247 25.5
Medtr5g048070 Medicago truncatula HOM05D004271 ORTHO05D006011 3.8e-09 67.0 361 21.3
Medtr6g071320 Medicago truncatula HOM05D004271 ORTHO05D006011 1.4e-08 65.1 363 20.4
SEGI_21761 Sequoiadendron giganteum HOM05D006400 ORTHO05D008039 1.4e-08 65.1 88 34.1
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 3.2e-08 63.9 59 50.8
PSO675G7384 Papaver somniferum HOM05D006400 ORTHO05D008039 9.4e-08 62.4 130 30.8
TPR.G22318 Trifolium pratense HOM05D004271 ORTHO05D006011 1.2e-07 62.0 345 20.9
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 1.6e-07 61.6 185 29.2
VMungo1215G1828 Vigna mungo HOM05D006400 ORTHO05D045060 1.6e-07 61.6 77 46.8
AUR62000973 Chenopodium quinoa HOM05D007128 ORTHO05D009059 2.7e-07 60.8 195 28.2
DCAR_002545 Daucus carota HOM05D003975 ORTHO05D045060 2.7e-07 60.8 59 52.5
THA.LOC104821701 Tarenaya hassleriana HOM05D006877 ORTHO05D008735 2.7e-07 60.8 253 26.5
ATR0208G029 Amborella trichopoda HOM05D007937 ORTHO05D010000 3.6e-07 60.5 384 18.8
AUR62039467 Chenopodium quinoa HOM05D003210 ORTHO05D000001 3.6e-07 60.5 180 29.4
SMO143G0105 Selaginella moellendorffii HOM05D017046 ORTHO05D010847 6.1e-07 59.7 76 36.8
Lalb_Chr14g0373751 Lupinus albus HOM05D000891 ORTHO05D000761 1.0e-06 58.9 141 30.5
PSO782G4466 Papaver somniferum HOM05D000424 ORTHO05D008586 1.0e-06 58.9 194 24.2
BcaC01g00449 Brassica carinata HOM05D000891 ORTHO05D000761 1.4e-06 58.5 242 23.6
Psat5g195760 Pisum sativum HOM05D006888 ORTHO05D008371 1.4e-06 58.5 125 28.8
QL03p000909 Quercus lobata HOM05D005622 ORTHO05D002854 1.4e-06 58.5 433 21.7
QL03p001266 Quercus lobata HOM05D005622 ORTHO05D002854 1.4e-06 58.5 426 21.8
C03p79970 Brassica napus HOM05D000891 ORTHO05D000761 2.3e-06 57.8 242 23.6
BolC3t20249H Brassica oleracea HOM05D000891 ORTHO05D000761 2.3e-06 57.8 242 23.6
Actinidia26936 Actinidia chinensis HOM05D000891 ORTHO05D000761 3.0e-06 57.4 113 32.7
Oeu017112.4 Olea europaea HOM05D000167 ORTHO05D000465 3.0e-06 57.4 74 36.5
SEGI_06165 Sequoiadendron giganteum HOM05D007655 ORTHO05D009698 3.0e-06 57.4 238 20.6
BolC8t49189H Brassica oleracea HOM05D000032 ORTHO05D007907 3.9e-06 57.0 156 25.0
Sabra11G0040100 Salix brachista HOM05D002986 ORTHO05D007611 3.9e-06 57.0 199 24.1
BraA08t34190Z Brassica rapa HOM05D000891 ORTHO05D000761 5.1e-06 56.6 242 23.1
CSS0047930 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 5.1e-06 56.6 138 26.8
FAN18G2809 Fragaria x ananassa HOM05D000424 ORTHO05D008586 6.7e-06 56.2 176 24.4
HPP92_008081 Vanilla planifolia HOM05D000424 ORTHO05D008586 8.8e-06 55.8 170 25.3


User provided reference genes

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