Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 3.7e-103 378.3 196 100.0
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 1.2e-72 276.9 197 77.2
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 4.9e-71 271.6 195 77.9
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 1.2e-69 266.9 197 77.2
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 1.0e-68 263.8 197 77.7
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 5.0e-68 261.5 196 76.5
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 5.0e-68 261.5 196 76.5
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 1.9e-67 259.6 195 75.9
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 1.9e-67 259.6 196 73.5
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 1.6e-66 256.5 195 73.3
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.6e-66 256.5 196 73.5
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 2.1e-66 256.1 196 73.5
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 2.1e-66 256.1 196 73.5
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 8.1e-66 254.2 197 74.6
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 2.3e-65 252.7 197 74.6
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 8.9e-65 250.8 196 71.4
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 8.9e-65 250.8 196 73.5
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 1.5e-64 250.0 197 73.6
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 3.4e-64 248.8 197 71.1
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 3.4e-64 248.8 196 70.4
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 4.4e-64 248.4 194 72.7
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 4.4e-64 248.4 197 71.6
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 4.4e-64 248.4 197 72.1
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 7.5e-64 247.7 197 72.6
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 4.9e-63 245.0 198 70.7
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 6.4e-63 244.6 197 70.6
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 1.9e-62 243.0 195 70.8
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 1.9e-62 243.0 198 70.7
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 3.2e-62 242.3 198 71.7
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 5.4e-62 241.5 196 72.4
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 1.2e-61 240.4 197 70.6
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 2.1e-61 239.6 197 70.6
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 2.7e-61 239.2 197 70.1
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 2.7e-61 239.2 186 75.3
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 3.5e-61 238.8 197 70.6
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 4.6e-61 238.4 196 69.9
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 7.8e-61 237.7 197 70.1
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 1.0e-60 237.3 147 87.1
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 3.9e-60 235.3 147 85.0
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 6.6e-60 234.6 197 68.5
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 6.6e-60 234.6 196 67.3
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 8.6e-60 234.2 197 69.0
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 8.6e-60 234.2 197 69.5
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 1.5e-59 233.4 197 69.5
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 2.5e-59 232.6 192 71.4
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 2.5e-59 232.6 193 72.0
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 4.3e-59 231.9 196 69.4
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 5.6e-59 231.5 140 87.9
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 7.3e-59 231.1 195 69.2
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 1.6e-58 229.9 199 67.8
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 2.1e-58 229.6 183 73.2
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 2.1e-58 229.6 145 84.8
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 3.6e-58 228.8 196 66.3
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 4.7e-58 228.4 172 73.3
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 4.7e-58 228.4 185 70.3
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 8.1e-58 227.6 195 68.7
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.1e-57 227.3 166 74.7
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 1.4e-57 226.9 166 73.5
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 1.4e-57 226.9 166 72.9
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 1.8e-57 226.5 140 85.0
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 3.1e-57 225.7 164 76.2
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 3.1e-57 225.7 195 67.2
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 4.0e-57 225.3 201 66.7
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 4.0e-57 225.3 194 69.6
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 5.2e-57 224.9 180 71.1
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 5.2e-57 224.9 180 71.7
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 6.8e-57 224.6 196 66.3
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 8.9e-57 224.2 160 75.0
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 8.9e-57 224.2 160 75.0
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 8.9e-57 224.2 196 67.3
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.2e-56 223.8 195 67.2
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 1.5e-56 223.4 193 68.4
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 2.0e-56 223.0 196 66.8
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 2.0e-56 223.0 176 71.6
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 2.0e-56 223.0 196 66.8
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 2.6e-56 222.6 177 70.1
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 2.6e-56 222.6 196 66.8
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 4.4e-56 221.9 160 74.4
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 4.4e-56 221.9 161 74.5
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 4.4e-56 221.9 195 65.1
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 5.8e-56 221.5 182 70.3
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 5.8e-56 221.5 196 66.3
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 9.9e-56 220.7 180 71.1
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 1.7e-55 219.9 198 66.2
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.7e-55 219.9 197 66.0
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 1.7e-55 219.9 146 80.1
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 2.2e-55 219.5 179 71.5
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.8e-55 218.8 197 66.0
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 3.8e-55 218.8 199 64.8
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 4.9e-55 218.4 160 74.4
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 4.9e-55 218.4 182 69.8
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 6.4e-55 218.0 167 71.3
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 6.4e-55 218.0 198 65.2
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 6.4e-55 218.0 178 72.5
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 8.4e-55 217.6 199 65.3
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 1.1e-54 217.2 145 80.7
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 1.1e-54 217.2 195 67.7
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 1.9e-54 216.5 145 80.7
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.9e-54 216.5 196 65.8
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 3.2e-54 215.7 197 64.5
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 4.2e-54 215.3 195 67.7
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 5.4e-54 214.9 185 68.1
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 5.4e-54 214.9 196 65.8
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 7.1e-54 214.5 184 69.0
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 7.1e-54 214.5 144 80.6
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 9.2e-54 214.2 181 69.6
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 9.2e-54 214.2 196 64.8
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 2.1e-53 213.0 148 79.1
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 2.1e-53 213.0 175 66.9
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.1e-53 213.0 196 64.8
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 2.1e-53 213.0 163 72.4
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 2.1e-53 213.0 199 63.8
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 2.1e-53 213.0 146 79.5
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 2.7e-53 212.6 142 81.7
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 3.5e-53 212.2 164 73.2
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 6.0e-53 211.5 150 78.0
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 7.8e-53 211.1 196 64.8
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 2.3e-52 209.5 184 66.8
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 3.0e-52 209.1 197 64.0
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 3.0e-52 209.1 170 70.6
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 6.6e-52 208.0 198 64.1
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 2.5e-51 206.1 169 69.8
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 9.6e-51 204.1 175 70.3
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 9.6e-51 204.1 182 66.5
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 2.1e-50 203.0 115 91.3
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 3.6e-50 202.2 179 67.6
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 3.6e-50 202.2 115 92.2
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 3.6e-50 202.2 115 92.2
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 8.1e-50 201.1 113 92.9
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 1.4e-49 200.3 113 91.2
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 1.4e-49 200.3 194 63.4
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 6.9e-49 198.0 113 90.3
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 1.2e-48 197.2 112 92.0
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 2.6e-48 196.1 198 60.6
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 5.8e-48 194.9 205 57.6
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 7.1e-46 188.0 138 70.3
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 1.6e-45 186.8 195 57.9
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 6.0e-45 184.9 111 87.4
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.0e-44 182.6 195 58.5
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 3.9e-44 182.2 195 58.5
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 6.6e-44 181.4 198 57.1
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.5e-43 179.5 168 63.1
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 2.5e-43 179.5 109 82.6
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 4.3e-43 178.7 141 69.5
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 1.1e-41 174.1 139 69.1
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 5.3e-41 171.8 196 56.1
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.2e-40 170.6 144 62.5
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 2.2e-39 166.4 146 66.4
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 3.8e-39 165.6 133 72.2
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 6.4e-39 164.9 113 74.3
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 8.4e-39 164.5 111 73.9
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 1.6e-37 160.2 165 61.2
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 1.6e-37 160.2 348 37.6
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 5.6e-35 151.8 115 70.4
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.2e-32 144.1 160 57.5
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 2.2e-31 139.8 128 65.6
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 2.3e-28 129.8 109 60.6
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 1.5e-24 117.1 92 70.7
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 4.9e-23 112.1 91 69.2
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 6.5e-23 111.7 138 48.6
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 5.5e-22 108.6 91 65.9
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 5.5e-22 108.6 85 69.4
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 1.6e-21 107.1 86 68.6
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 1.0e-20 104.4 86 67.4
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 1.0e-20 104.4 86 67.4
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 1.4e-17 94.0 96 56.2
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 7.2e-14 81.6 49 85.7
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 2.1e-13 80.1 47 85.1
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 6.1e-13 78.6 44 90.9
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 5.3e-09 65.5 38 84.2


User provided reference genes

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