Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G143600 Manihot esculenta HOM05D005968 ORTHO05D007158 2.4e-189 665.2 312 100.0
Dinv41378 Davidia involucrata HOM05D005968 ORTHO05D007158 9.8e-175 616.7 312 91.7
Glyma.02G204100 Glycine max HOM05D005968 ORTHO05D007158 9.8e-175 616.7 312 91.0
Potri.006G184300 Populus trichocarpa HOM05D005968 ORTHO05D007158 2.2e-174 615.5 311 91.3
CiPaw.15G168400 Carya illinoinensis HOM05D005968 ORTHO05D007158 6.4e-174 614.0 312 91.0
Thecc.09G030600 Theobroma cacao HOM05D005968 ORTHO05D007158 1.4e-173 612.8 313 90.1
Glyma.17G073700 Glycine max HOM05D005968 ORTHO05D007158 1.9e-173 612.5 312 91.0
CSS0021374 Camellia sinensis var. sinensis HOM05D005968 ORTHO05D007158 7.1e-173 610.5 312 91.3
Duzib187G1838 Durio zibethinus HOM05D005968 ORTHO05D007158 1.2e-172 609.8 313 89.8
Dinv42854 Davidia involucrata HOM05D005968 ORTHO05D007158 3.5e-172 608.2 308 91.9
Hma1.2p1_0222F.1_g093590 Hydrangea macrophylla HOM05D005968 ORTHO05D007158 1.3e-171 606.3 312 90.4
Atru.chr7.47_Atru.chr7.48 Acer truncatum HOM05D005968 ORTHO05D007158 3.9e-171 604.7 313 89.5
Gohir.D08G273400 Gossypium hirsutum HOM05D005968 ORTHO05D007158 3.9e-171 604.7 305 90.5
Gorai.004G291800 Gossypium raimondii HOM05D005968 ORTHO05D007158 3.9e-171 604.7 305 90.8
Prupe.7G263000 Prunus persica HOM05D005968 ORTHO05D007158 1.1e-170 603.2 310 90.3
Lj4g0027447 Lotus japonicus HOM05D005968 ORTHO05D007158 9.5e-170 600.1 312 89.1
Ciclev10008980m.g Citrus clementina HOM05D005968 ORTHO05D007158 1.2e-169 599.7 313 89.1
Gohir.A08G251800 Gossypium hirsutum HOM05D005968 ORTHO05D007158 1.6e-169 599.4 310 89.0
Nn8g39893 Nelumbo nucifera HOM05D005968 ORTHO05D007158 3.6e-169 598.2 305 89.8
CiPaw.16G111000 Carya illinoinensis HOM05D005968 ORTHO05D007158 4.7e-169 597.8 306 90.8
ECA236G4418 Erigeron canadensis HOM05D005968 ORTHO05D007158 4.7e-169 597.8 310 87.4
CANSAT11G2689 Cannabis sativa HOM05D005968 ORTHO05D007158 8.1e-169 597.0 312 87.8
Potri.018G106700 Populus trichocarpa HOM05D005968 ORTHO05D007158 2.0e-167 592.4 311 87.8
PSO561G0082 Papaver somniferum HOM05D005968 ORTHO05D007158 9.9e-167 590.1 310 87.1
PSO111G0029 Papaver somniferum HOM05D005968 ORTHO05D007158 1.7e-166 589.3 310 87.1
DCAR_019393 Daucus carota HOM05D005968 ORTHO05D007158 2.2e-166 589.0 305 87.9
Eucgr.C02493 Eucalyptus grandis HOM05D005968 ORTHO05D007158 2.2e-166 589.0 312 87.2
FvH4_1g00920 Fragaria vesca HOM05D005968 ORTHO05D007158 8.4e-166 587.0 312 87.5
Migut.K00326 Erythranthe guttata HOM05D005968 ORTHO05D007158 1.4e-165 586.3 308 86.4
Nn2g12378 Nelumbo nucifera HOM05D005968 ORTHO05D007158 1.9e-165 585.9 308 87.7
PGSC0003DMG400011184 Solanum tuberosum HOM05D005968 ORTHO05D007158 1.9e-165 585.9 306 87.9
HanXRQChr09g0245781 Helianthus annuus HOM05D005968 ORTHO05D007158 2.1e-164 582.4 310 87.7
Sed0018428 Sechium edule HOM05D005968 ORTHO05D007158 2.1e-164 582.4 303 89.1
FAN23G3092 Fragaria x ananassa HOM05D005968 ORTHO05D007158 2.7e-164 582.0 312 87.5
QL02p093270 Quercus lobata HOM05D005968 ORTHO05D007158 8.6e-163 577.0 309 87.4
EL10Ac8g18668 Beta vulgaris HOM05D005968 ORTHO05D007158 1.1e-162 576.6 309 86.1
arahy.Tifrunner.gnm1.ann1.D6JQQQ Arachis hypogaea HOM05D005968 ORTHO05D007158 3.3e-162 575.1 312 87.5
THA.LOC104803560 Tarenaya hassleriana HOM05D005968 ORTHO05D007158 9.6e-162 573.5 304 86.2
Carub.0007s0964 Capsella rubella HOM05D005968 ORTHO05D007158 1.6e-161 572.8 317 82.0
Thhalv10025727m.g Eutrema salsugineum HOM05D005968 ORTHO05D007158 3.6e-161 571.6 303 85.1
Aqoxy2G01962_Aqoxy2G01963 Aquilegia oxysepala HOM05D005968 ORTHO05D007158 1.1e-160 570.1 312 84.9
AL7G21190 Arabidopsis lyrata HOM05D005968 ORTHO05D007158 2.4e-160 568.9 306 83.0
SalBow1G6433 Salvia bowleyana HOM05D005968 ORTHO05D007158 1.5e-159 566.2 309 85.1
MD15G1144700 Malus domestica HOM05D005968 ORTHO05D007158 2.0e-159 565.8 312 85.9
Sp7g28770 Schrenkiella parvula HOM05D005968 ORTHO05D007158 2.0e-159 565.8 306 83.3
MD02G1007400 Malus domestica HOM05D005968 ORTHO05D007158 3.4e-159 565.1 310 85.5
Zm00001eb086780 Zea mays HOM05D005968 ORTHO05D007158 3.4e-159 565.1 305 83.0
Lsat_1_v5_gn_8_63401 Lactuca sativa HOM05D005968 ORTHO05D007158 5.8e-159 564.3 310 85.2
TAR626G1902 Trochodendron aralioides HOM05D005968 ORTHO05D007158 9.9e-159 563.5 303 85.5
AT4G30900 Arabidopsis thaliana HOM05D005968 ORTHO05D007158 1.7e-158 562.8 306 82.7
CARHR238800 Cardamine hirsuta HOM05D005968 ORTHO05D007158 3.8e-158 561.6 305 83.0
Zm00001eb420110 Zea mays HOM05D005968 ORTHO05D007158 2.4e-157 558.9 305 82.3
Lj7A459G65 Lonicera japonica HOM05D005968 ORTHO05D007158 4.6e-156 554.7 305 86.2
BolC1t00793H Brassica oleracea HOM05D005968 ORTHO05D007158 6.0e-156 554.3 311 82.6
BcaC09g51877 Brassica carinata HOM05D005968 ORTHO05D007158 1.3e-155 553.1 311 82.3
A01p07280 Brassica napus HOM05D005968 ORTHO05D007158 1.3e-155 553.1 311 82.3
BraA01t00677Z Brassica rapa HOM05D005968 ORTHO05D007158 1.3e-155 553.1 311 82.3
BcaNung03430 Brassica carinata HOM05D005968 ORTHO05D007158 8.7e-155 550.4 306 81.4
C01p08040 Brassica napus HOM05D005968 ORTHO05D007158 1.1e-154 550.1 311 82.0
Ca_21128_v3 Cicer arietinum L. HOM05D005968 ORTHO05D007158 1.1e-154 550.1 312 84.3
DCAR_017911 Daucus carota HOM05D005968 ORTHO05D007158 1.9e-154 549.3 311 81.7
Psat0s2403g0360 Pisum sativum HOM05D005968 ORTHO05D007158 1.9e-154 549.3 301 85.0
FAN26G1763 Fragaria x ananassa HOM05D005968 ORTHO05D007158 2.5e-154 548.9 312 83.3
Cfa020826 Carpinus fangiana HOM05D002374 ORTHO05D003594 1.1e-152 543.5 300 84.7
Sabra06G0140100 Salix brachista HOM05D005968 ORTHO05D007158 4.0e-152 541.6 415 67.0
VMungo1215G2113 Vigna mungo HOM05D005968 ORTHO05D007158 9.0e-152 540.4 312 81.7
Peaxi162Scf00401g00718 Petunia axillaris HOM05D005968 ORTHO05D007158 9.9e-151 537.0 306 83.0
Sabra18G0090900 Salix brachista HOM05D005968 ORTHO05D007158 9.9e-151 537.0 362 72.1
SEGI_19747 Sequoiadendron giganteum HOM05D005968 ORTHO05D007158 4.3e-146 521.5 305 78.4
Phvul.003G156000 Phaseolus vulgaris HOM05D005968 ORTHO05D007158 1.4e-144 516.5 276 87.0
Actinidia38673 Actinidia chinensis HOM05D005968 ORTHO05D007158 1.2e-143 513.5 272 87.5
COL.COLO4_18810 Corchorus olitorius HOM05D000238 ORTHO05D007158 8.4e-142 507.3 297 80.8
PGR102G1528 Punica granatum HOM05D005968 ORTHO05D007158 2.4e-141 505.8 263 89.7
ATR0739G020 Amborella trichopoda HOM05D005968 ORTHO05D007158 1.6e-132 476.5 303 74.3
unitig_52.g17565 Utricularia gibba HOM05D005968 ORTHO05D007158 1.0e-131 473.8 324 70.1
TWI34G0179 Tripterygium wilfordii HOM05D005968 ORTHO05D007158 1.3e-131 473.4 311 74.0
AUR62029822 Chenopodium quinoa HOM05D005968 ORTHO05D007158 2.5e-130 469.2 262 82.8
CsaV3_1G028970 Cucumis sativus L. HOM05D005968 ORTHO05D007158 2.0e-127 459.5 303 73.6
AUR62006466 Chenopodium quinoa HOM05D005968 ORTHO05D007158 4.6e-124 448.4 255 81.2
Mapoly0088s0077 Marchantia polymorpha HOM05D005968 ORTHO05D007158 2.5e-122 442.6 302 64.2
SGA_v2.0_scaffold347G49545 Striga asiatica HOM05D005968 ORTHO05D007158 3.9e-115 418.7 337 63.5
Lsat_1_v5_gn_7_66900 Lactuca sativa HOM05D005968 ORTHO05D007158 1.6e-100 370.2 274 67.5
Nitab4.5_0003623g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 6.1e-100 368.2 306 62.4
Nitab4.5_0009876g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 3.1e-96 355.9 182 89.0
CiPaw.15G168700 Carya illinoinensis HOM05D005968 ORTHO05D007158 7.2e-93 344.7 186 87.6
GSVIVG01023606001 Vitis vinifera HOM05D005968 ORTHO05D007158 2.0e-90 336.7 169 89.9
Lsat_1_v5_gn_4_18721 Lactuca sativa HOM05D005968 ORTHO05D007158 3.4e-90 335.9 184 82.6
Cpa.g.sc46.157 Carica papaya HOM05D005968 ORTHO05D007158 6.3e-89 331.6 171 89.5
Lalb_Chr12g0198711 Lupinus albus HOM05D005968 ORTHO05D007158 2.4e-88 329.7 169 89.9
RcHm_v2.0_Chr2g0085611 Rosa chinensis HOM05D005968 ORTHO05D007158 7.7e-87 324.7 169 86.4
TPR.G24830 Trifolium pratense HOM05D005968 ORTHO05D007158 7.7e-87 324.7 169 88.8
Oeu038140.1 Olea europaea HOM05D005968 ORTHO05D007158 1.0e-86 324.3 166 88.0
MSTRG.26272 Avicennia marina HOM05D005968 ORTHO05D007158 2.9e-86 322.8 162 89.5
CAN.G160.61 Capsicum annuum HOM05D005968 ORTHO05D007158 1.5e-85 320.5 167 86.2
FAN28G0447 Fragaria x ananassa HOM05D005968 ORTHO05D007158 1.5e-85 320.5 169 85.2
Cc06_g14950 Coffea canephora HOM05D005968 ORTHO05D007158 1.9e-85 320.1 169 88.2
Medtr4g130830 Medicago truncatula HOM05D005968 ORTHO05D007158 4.2e-85 318.9 169 88.2
Sopen07g001720 Solanum pennellii HOM05D005968 ORTHO05D007158 4.2e-85 318.9 166 86.7
Eucgr.C02540 Eucalyptus grandis HOM05D005968 ORTHO05D007158 5.5e-85 318.5 169 85.8
Sc17g0006690 Simmondsia chinensis HOM05D005968 ORTHO05D007158 3.0e-83 312.8 160 88.1
AagrBONN_evm.TU.Sc2ySwM_362.192 Anthoceros agrestis HOM05D005968 ORTHO05D007158 3.7e-81 305.8 244 56.1
vmacro06082 Vaccinium macrocarpon HOM05D005968 ORTHO05D007158 1.3e-78 297.4 186 76.9
Haze_19205 Corylus avellana HOM05D005968 ORTHO05D007158 2.7e-71 273.1 145 86.9
Lalb_Chr12g0198701 Lupinus albus HOM05D005968 ORTHO05D007158 2.0e-63 246.9 124 90.3
Dinv43246 Davidia involucrata HOM05D005968 ORTHO05D007158 7.8e-63 245.0 124 91.9
TPR.G24874 Trifolium pratense HOM05D005968 ORTHO05D007158 1.0e-62 244.6 124 87.9
Medtr4g130840 Medicago truncatula HOM05D005968 ORTHO05D007158 1.1e-61 241.1 124 86.3
GSVIVG01023605001 Vitis vinifera HOM05D005968 ORTHO05D007158 1.9e-61 240.4 124 89.5
Cc06_g14960 Coffea canephora HOM05D005968 ORTHO05D007158 7.3e-61 238.4 124 89.5
Sopen07g001730 Solanum pennellii HOM05D005968 ORTHO05D007158 1.2e-60 237.7 124 88.7
Solyc07g005620.2 Solanum lycopersicum HOM05D005968 ORTHO05D007158 2.8e-60 236.5 124 87.9
RcHm_v2.0_Chr2g0085621 Rosa chinensis HOM05D005968 ORTHO05D007158 1.2e-58 231.1 124 87.1
ClCG06G012410 Citrullus lanatus HOM05D005968 ORTHO05D007158 2.6e-58 229.9 124 87.1
MELO3C010224.2 Cucumis melo HOM05D005968 ORTHO05D007158 4.4e-58 229.2 124 86.3
Oeu038141.1 Olea europaea HOM05D005968 ORTHO05D007158 9.8e-58 228.0 124 83.9
RhsimUnG0158300 Rhododendron simsii HOM05D005968 ORTHO05D001263 3.2e-56 223.0 122 81.1
TAR636G1721 Trochodendron aralioides HOM05D005968 ORTHO05D007158 5.1e-54 215.7 110 85.5
Os05g0279600 Oryza sativa ssp. japonica HOM05D005968 ORTHO05D007158 1.9e-53 213.8 123 78.9
Cpa.g.sc46.156 Carica papaya HOM05D005968 ORTHO05D007158 2.8e-52 209.9 144 72.2
HPP92_004698 Vanilla planifolia HOM05D005968 ORTHO05D007158 4.7e-52 209.1 125 80.8
Aa31LG2G19470 Aethionema arabicum HOM05D005968 ORTHO05D007158 8.1e-52 208.4 117 80.3
HPP92_004697 Vanilla planifolia HOM05D005968 ORTHO05D007158 2.4e-48 196.8 106 79.2
CDE04G1812 Ceratophyllum demersum HOM05D005968 ORTHO05D007158 8.1e-36 155.2 89 76.4
arahy.Tifrunner.gnm1.ann1.4WLG0J Arachis hypogaea HOM05D005968 ORTHO05D007158 9.0e-35 151.8 243 38.7
arahy.Tifrunner.gnm1.ann1.HW7BNQ Arachis hypogaea HOM05D005968 ORTHO05D007158 8.4e-33 145.2 75 88.0
Lsat_1_v5_gn_4_18741 Lactuca sativa HOM05D005968 ORTHO05D007158 3.0e-30 136.7 80 77.5
TAR636G0142 Trochodendron aralioides HOM05D002374 ORTHO05D003594 8.7e-30 135.2 77 79.2
Nitab4.5_0006121g0010 Nicotiana tabacum HOM05D005968 ORTHO05D007158 6.2e-28 129.0 69 87.0
Eucgr.C02541 Eucalyptus grandis HOM05D005968 ORTHO05D007158 1.2e-23 114.8 71 78.9
SHI23672 Sapria himalayana HOM05D005968 ORTHO05D007158 1.8e-19 100.9 66 72.7
arahy.Tifrunner.gnm1.ann1.QXT71M Arachis hypogaea HOM05D005968 ORTHO05D007158 1.6e-15 87.8 46 87.0
arahy.Tifrunner.gnm1.ann1.VCSM30 Arachis hypogaea HOM05D005968 ORTHO05D007158 3.9e-14 83.2 47 80.9
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 3.1e-11 73.6 34 88.2
arahy.Tifrunner.gnm1.ann1.HGKJ8P Arachis hypogaea HOM05D005968 ORTHO05D007158 5.3e-11 72.8 40 82.5
Oeu038782.2 Olea europaea HOM05D005968 ORTHO05D007158 1.3e-09 68.2 56 60.7


User provided reference genes

Program Settings