Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 1.3e-64 249.6 130 100.0
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 2.0e-60 235.7 129 93.0
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 1.6e-57 226.1 130 87.7
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 2.7e-57 225.3 130 86.9
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 7.7e-57 223.8 130 87.7
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 2.9e-56 221.9 130 85.4
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 3.8e-56 221.5 130 85.4
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 5.0e-56 221.1 130 85.4
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 6.6e-56 220.7 129 86.0
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 6.6e-56 220.7 129 86.0
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 1.1e-55 219.9 130 83.8
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 1.1e-55 219.9 131 86.3
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 1.9e-55 219.2 130 83.8
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.3e-55 218.4 131 85.5
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 4.2e-55 218.0 131 84.7
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 5.5e-55 217.6 129 85.3
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 7.2e-55 217.2 131 84.0
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 7.2e-55 217.2 129 85.3
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 9.5e-55 216.9 130 84.6
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 9.5e-55 216.9 130 82.3
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 1.2e-54 216.5 131 84.7
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 1.2e-54 216.5 130 83.1
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 1.6e-54 216.1 131 84.0
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 1.6e-54 216.1 131 84.7
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 2.8e-54 215.3 129 86.8
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 3.6e-54 214.9 131 84.7
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 3.6e-54 214.9 133 85.7
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 6.1e-54 214.2 131 84.0
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 6.1e-54 214.2 131 83.2
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 6.1e-54 214.2 131 84.0
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 8.0e-54 213.8 130 82.3
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 8.0e-54 213.8 129 86.0
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 1.0e-53 213.4 130 83.1
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 1.0e-53 213.4 129 85.3
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 1.0e-53 213.4 131 83.2
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 1.0e-53 213.4 131 83.2
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 1.0e-53 213.4 131 86.3
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 1.0e-53 213.4 131 84.0
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 1.8e-53 212.6 131 83.2
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 1.8e-53 212.6 131 83.2
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 1.8e-53 212.6 131 83.2
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 1.8e-53 212.6 131 83.2
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 1.8e-53 212.6 129 85.3
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 1.8e-53 212.6 129 85.3
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 1.8e-53 212.6 131 82.4
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 2.3e-53 212.2 130 82.3
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 2.3e-53 212.2 131 84.0
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 2.3e-53 212.2 131 82.4
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 2.3e-53 212.2 133 83.5
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 3.0e-53 211.8 129 82.2
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 3.0e-53 211.8 131 84.0
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 4.0e-53 211.5 131 83.2
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 5.2e-53 211.1 131 80.9
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 5.2e-53 211.1 130 83.8
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 5.2e-53 211.1 130 81.5
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 5.2e-53 211.1 131 81.7
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 5.2e-53 211.1 130 81.5
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 8.9e-53 210.3 131 81.7
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 8.9e-53 210.3 132 83.3
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 1.2e-52 209.9 133 80.5
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 1.2e-52 209.9 131 81.7
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 1.5e-52 209.5 131 80.9
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 2.0e-52 209.1 130 79.2
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 2.0e-52 209.1 130 81.5
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 2.6e-52 208.8 130 83.1
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 3.4e-52 208.4 132 82.6
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 3.4e-52 208.4 132 82.6
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 3.4e-52 208.4 132 82.6
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 3.4e-52 208.4 132 82.6
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 4.4e-52 208.0 131 80.9
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 5.7e-52 207.6 132 81.8
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 7.5e-52 207.2 130 80.0
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 7.5e-52 207.2 133 82.0
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 9.8e-52 206.8 132 81.8
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 9.8e-52 206.8 131 80.9
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 9.8e-52 206.8 131 80.9
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 1.3e-51 206.5 131 80.2
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 1.7e-51 206.1 131 79.4
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 2.8e-51 205.3 130 80.8
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 2.8e-51 205.3 127 82.7
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 4.9e-51 204.5 130 80.8
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 4.9e-51 204.5 132 80.3
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 4.9e-51 204.5 131 80.9
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 6.3e-51 204.1 128 83.6
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 6.3e-51 204.1 131 81.7
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 6.3e-51 204.1 131 78.6
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 6.3e-51 204.1 130 78.5
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 8.3e-51 203.8 132 79.5
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 8.3e-51 203.8 132 78.0
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 8.3e-51 203.8 132 78.0
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 1.1e-50 203.4 131 80.2
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 1.4e-50 203.0 130 79.2
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 2.4e-50 202.2 131 79.4
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 3.1e-50 201.8 131 80.2
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 3.1e-50 201.8 131 78.6
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 4.1e-50 201.4 131 80.2
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 4.1e-50 201.4 132 79.5
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 5.4e-50 201.1 131 79.4
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 7.0e-50 200.7 131 77.9
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 9.2e-50 200.3 131 80.2
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 1.2e-49 199.9 129 76.7
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 1.2e-49 199.9 129 75.2
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 1.6e-49 199.5 132 76.5
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 3.5e-49 198.4 131 75.6
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 5.9e-49 197.6 129 74.4
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 5.9e-49 197.6 129 77.5
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 5.9e-49 197.6 129 76.0
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 5.9e-49 197.6 129 76.0
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 7.8e-49 197.2 128 79.7
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 7.8e-49 197.2 129 77.5
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 1.0e-48 196.8 131 77.9
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 3.9e-48 194.9 129 76.0
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 5.0e-48 194.5 133 76.7
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 8.6e-48 193.7 130 76.2
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 1.1e-47 193.4 123 77.2
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 1.1e-47 193.4 131 77.1
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 1.5e-47 193.0 132 75.0
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 5.6e-47 191.0 130 75.4
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 1.2e-46 189.9 132 75.8
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 4.7e-46 188.0 177 62.1
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 6.8e-45 184.1 162 62.3
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 2.0e-44 182.6 136 72.1
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 5.8e-44 181.0 133 73.7
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 5.8e-44 181.0 130 73.8
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 7.5e-44 180.6 128 75.8
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 2.2e-43 179.1 129 71.3
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 9.2e-42 173.7 131 71.8
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 1.6e-41 172.9 102 83.3
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 6.6e-40 167.5 126 68.3
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 7.3e-39 164.1 133 67.7
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 2.6e-36 155.6 131 65.6
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 5.8e-36 154.5 132 65.2
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 2.2e-35 152.5 131 64.9
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 2.9e-35 152.1 121 62.8
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.2e-33 146.7 127 63.8
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 3.5e-33 145.2 127 65.4
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 8.6e-32 140.6 130 62.3
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 4.0e-29 131.7 132 58.3
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 3.3e-23 112.1 127 51.2
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 4.7e-22 108.2 76 73.7
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 2.9e-19 99.0 106 51.9
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.0e-16 90.5 66 66.7
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 4.0e-13 78.6 48 83.3
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 1.0e-08 63.9 78 43.6
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 3.9e-08 62.0 92 38.0


User provided reference genes

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