Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 2.7e-197 691.8 344 100.0
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 1.3e-119 433.7 328 66.5
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 1.1e-118 430.6 327 65.1
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 1.0e-116 424.1 327 66.4
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 3.9e-116 422.2 323 63.5
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 5.1e-116 421.8 321 64.2
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 2.8e-114 416.0 327 65.4
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 1.4e-113 413.7 330 64.8
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.5e-112 410.2 326 62.9
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.5e-112 410.2 326 63.5
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.7e-111 406.8 326 63.2
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 2.9e-111 406.0 326 65.3
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.8e-111 405.6 324 63.3
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.4e-110 403.7 327 59.9
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.4e-110 403.7 326 62.9
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 2.5e-110 402.9 329 60.2
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 4.2e-110 402.1 328 62.8
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 6.1e-109 398.3 324 62.7
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 7.9e-109 397.9 324 63.0
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.0e-108 397.5 323 61.0
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 1.8e-108 396.7 323 62.8
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 6.7e-108 394.8 329 59.3
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 4.3e-107 392.1 272 70.6
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 2.2e-106 389.8 327 59.3
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 4.8e-106 388.7 325 58.8
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 1.4e-102 377.1 324 60.2
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 1.4e-102 377.1 326 57.7
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 3.2e-102 375.9 332 59.3
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 5.5e-102 375.2 326 58.3
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.6e-101 373.6 318 58.2
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 3.6e-101 372.5 338 57.4
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 6.1e-101 371.7 326 56.1
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 3.0e-100 369.4 330 56.4
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 5.1e-100 368.6 321 57.9
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 8.8e-100 367.9 323 58.2
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.0e-99 366.7 331 58.0
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 2.0e-99 366.7 326 56.7
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 2.6e-99 366.3 329 56.8
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 7.4e-99 364.8 321 57.3
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 1.7e-98 363.6 325 57.2
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 2.8e-98 362.8 325 56.0
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 2.8e-98 362.8 319 58.0
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.8e-98 362.1 325 56.9
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 6.3e-98 361.7 321 56.7
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 8.2e-98 361.3 323 58.5
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 8.2e-98 361.3 325 56.9
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.1e-97 360.9 326 56.4
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 1.6e-96 357.1 331 54.1
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 2.6e-96 356.3 331 54.7
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 4.5e-96 355.5 329 55.3
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 4.5e-96 355.5 349 54.2
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 7.7e-96 354.8 320 57.2
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.0e-95 352.1 346 54.3
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 5.0e-95 352.1 334 55.7
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 5.5e-94 348.6 316 57.0
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 1.6e-93 347.1 301 57.5
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 2.7e-93 346.3 327 55.0
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.7e-93 346.3 328 54.0
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 2.7e-93 346.3 323 54.5
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 6.1e-93 345.1 327 55.0
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.0e-92 344.4 322 54.7
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 1.4e-92 344.0 331 55.0
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 1.4e-92 344.0 323 54.8
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 2.3e-92 343.2 325 54.2
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 3.0e-92 342.8 254 63.8
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 4.0e-92 342.4 311 56.3
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.1e-91 340.9 327 52.9
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.5e-91 340.5 321 54.2
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 1.5e-91 340.5 322 54.7
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 2.0e-91 340.1 324 54.3
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 2.6e-91 339.7 330 53.3
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 3.3e-91 339.3 331 53.8
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 4.4e-91 339.0 338 52.7
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 4.4e-91 339.0 327 52.3
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 9.7e-91 337.8 327 52.9
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 6.3e-90 335.1 321 53.3
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 1.1e-89 334.3 254 63.8
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 2.4e-89 333.2 323 53.3
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 3.1e-89 332.8 330 50.0
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 4.1e-89 332.4 335 53.1
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 4.1e-89 332.4 291 57.0
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 4.1e-89 332.4 324 52.5
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 4.1e-89 332.4 253 62.8
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 5.3e-89 332.0 291 56.7
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 5.3e-89 332.0 325 51.4
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 1.6e-88 330.5 326 52.1
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.6e-88 330.5 281 58.4
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.0e-88 330.1 302 57.6
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.0e-88 330.1 328 53.4
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.7e-88 329.7 322 53.7
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 2.7e-88 329.7 325 54.5
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 2.7e-88 329.7 321 52.0
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 3.5e-88 329.3 316 53.8
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 4.5e-88 328.9 324 54.9
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 4.5e-88 328.9 326 53.7
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 5.9e-88 328.6 322 51.2
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 1.0e-87 327.8 328 50.0
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.7e-87 327.0 306 54.2
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 2.9e-87 326.2 326 54.0
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 3.8e-87 325.9 315 51.1
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 3.8e-87 325.9 272 58.8
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 5.0e-87 325.5 310 51.6
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 5.0e-87 325.5 247 63.2
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 8.5e-87 324.7 330 49.4
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.9e-86 323.6 334 49.4
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 1.9e-86 323.6 308 52.3
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 1.9e-86 323.6 288 55.6
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.5e-86 323.2 334 49.4
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.5e-86 323.2 286 58.0
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 3.2e-86 322.8 281 57.7
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 4.2e-86 322.4 280 58.2
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 5.5e-86 322.0 325 51.4
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 7.2e-86 321.6 290 53.8
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 7.2e-86 321.6 290 54.1
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 9.4e-86 321.2 280 57.5
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 9.4e-86 321.2 331 49.2
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.1e-85 320.1 286 57.3
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 6.1e-85 318.5 286 57.0
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.0e-84 317.8 322 52.5
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 2.3e-84 316.6 287 52.6
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 2.3e-84 316.6 287 53.0
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 2.3e-84 316.6 287 52.6
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.8e-84 315.1 329 51.1
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 8.8e-84 314.7 335 49.3
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.0e-83 313.5 327 50.5
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 2.6e-83 313.2 251 59.0
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 2.6e-83 313.2 287 56.4
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 3.4e-83 312.8 287 52.3
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 3.4e-83 312.8 327 49.8
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 4.4e-83 312.4 324 49.1
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 5.7e-83 312.0 311 50.2
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 3.1e-81 306.2 336 49.1
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 4.1e-81 305.8 275 55.6
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 5.4e-81 305.4 287 54.0
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 7.0e-81 305.1 286 54.9
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 1.1e-78 297.7 256 57.4
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 1.1e-78 297.7 256 57.4
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 1.1e-78 297.7 325 48.0
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 3.6e-77 292.7 283 53.4
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 2.0e-75 287.0 245 55.9
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 1.7e-74 283.9 359 46.0
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 2.7e-72 276.6 273 52.4
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 3.5e-72 276.2 251 55.4
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 4.5e-72 275.8 300 48.3
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 7.7e-72 275.0 327 46.8
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 5.0e-71 272.3 278 49.3
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 1.0e-68 264.6 244 52.9
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 4.0e-68 262.7 287 46.3
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 5.2e-68 262.3 268 48.5
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 3.4e-67 259.6 242 55.0
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 7.0e-65 251.9 240 54.6
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.6e-64 250.8 157 74.5
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 1.9e-62 243.8 260 49.2
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 5.6e-62 242.3 241 50.2
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 4.7e-61 239.2 157 65.6
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 1.7e-58 230.7 178 58.4
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 7.5e-51 205.3 154 60.4
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.4e-49 200.3 254 46.5
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 4.6e-48 196.1 279 43.0
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 7.8e-48 195.3 231 44.2
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 7.8e-48 195.3 126 73.0
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 4.0e-44 183.0 224 45.1
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 3.4e-43 179.9 232 43.5
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 4.1e-41 172.9 249 40.2
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 5.4e-41 172.6 226 44.2
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 1.0e-31 141.7 129 58.9
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 2.3e-31 140.6 89 71.9
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 6.6e-31 139.0 170 45.9
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.6e-27 125.6 76 75.0
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 1.9e-25 120.9 87 65.5
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 1.2e-24 118.2 127 48.8
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 1.6e-21 107.8 75 66.7
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 3.8e-18 96.7 77 59.7
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 1.1e-17 95.1 83 51.8
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.2e-11 75.1 56 60.7


User provided reference genes

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