Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G130500 Manihot esculenta HOM05D004174 ORTHO05D004624 4.3e-256 887.5 445 100.0
Manes.06G050000 Manihot esculenta HOM05D004174 ORTHO05D004624 2.1e-218 762.3 445 86.5
CiPaw.03G241700 Carya illinoinensis HOM05D004174 ORTHO05D004624 8.8e-193 677.2 449 77.5
Potri.018G070400 Populus trichocarpa HOM05D004174 ORTHO05D004624 6.3e-191 671.0 451 75.2
TWI34G0924 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 1.1e-190 670.2 410 80.2
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 1.4e-190 669.8 445 76.6
Dinv36548 Davidia involucrata HOM05D004174 ORTHO05D004624 1.8e-190 669.5 405 81.2
Cfa003346 Carpinus fangiana HOM05D004174 ORTHO05D004624 8.5e-188 660.6 446 75.8
Haze_25614 Corylus avellana HOM05D004174 ORTHO05D004624 8.5e-188 660.6 446 76.2
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 7.2e-187 657.5 406 79.6
Actinidia07434 Actinidia chinensis HOM05D004174 ORTHO05D004624 3.6e-186 655.2 445 74.2
MD02G1035600 Malus domestica HOM05D004174 ORTHO05D004624 1.4e-185 653.3 414 78.3
FAN23G0992 Fragaria x ananassa HOM05D004174 ORTHO05D004624 1.1e-184 650.2 447 74.5
FAN28G1355 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.0e-184 649.4 447 74.3
FvH4_1g03600 Fragaria vesca HOM05D004174 ORTHO05D004624 2.6e-184 649.0 447 74.5
FAN19G0954 Fragaria x ananassa HOM05D004174 ORTHO05D004624 2.6e-184 649.0 447 74.5
Potri.006G154200 Populus trichocarpa HOM05D004174 ORTHO05D004624 2.6e-184 649.0 408 77.7
Sabra18G0061500 Salix brachista HOM05D004174 ORTHO05D004624 4.4e-184 648.3 451 73.8
Atru.chr7.1197 Acer truncatum HOM05D004174 ORTHO05D004624 9.7e-184 647.1 426 75.4
MD00G1107300 Malus domestica HOM05D004174 ORTHO05D004624 2.2e-183 646.0 442 73.8
Hma1.2p1_0665F.1_g199150 Hydrangea macrophylla HOM05D004174 ORTHO05D004624 4.8e-183 644.8 446 73.8
Actinidia26403 Actinidia chinensis HOM05D004174 ORTHO05D004624 6.3e-183 644.4 445 73.9
CANSAT11G0280 Cannabis sativa HOM05D004174 ORTHO05D004624 2.4e-182 642.5 448 72.3
RcHm_v2.0_Chr2g0089131 Rosa chinensis HOM05D004174 ORTHO05D004624 4.1e-182 641.7 441 73.9
TWI32G1270 Tripterygium wilfordii HOM05D004174 ORTHO05D004624 4.1e-182 641.7 411 76.6
QL02p087765 Quercus lobata HOM05D004174 ORTHO05D004624 7.0e-182 641.0 408 77.5
Gohir.A13G199200 Gossypium hirsutum HOM05D004174 ORTHO05D004624 2.6e-181 639.0 456 73.0
Gohir.D13G204700 Gossypium hirsutum HOM05D004174 ORTHO05D004624 4.5e-181 638.3 454 72.7
FAN26G3217 Fragaria x ananassa HOM05D004174 ORTHO05D004624 7.7e-181 637.5 446 73.3
Gorai.013G233600 Gossypium raimondii HOM05D004174 ORTHO05D004624 1.7e-180 636.3 454 72.5
Thecc.09G123000 Theobroma cacao HOM05D004174 ORTHO05D004624 1.7e-180 636.3 434 74.7
Ciclev10008313m.g Citrus clementina HOM05D004174 ORTHO05D004624 2.9e-180 635.6 434 73.5
vmacro06177 Vaccinium macrocarpon HOM05D004174 ORTHO05D004624 1.1e-179 633.6 446 73.1
TAR383G0558 Trochodendron aralioides HOM05D004174 ORTHO05D004624 4.7e-178 628.2 399 78.2
COL.COLO4_05761 Corchorus olitorius HOM05D004174 ORTHO05D004624 1.4e-177 626.7 411 76.4
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 3.3e-176 622.1 415 74.5
THA.LOC104811038 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 7.4e-176 620.9 442 69.9
Hund09144 Selenicereus undatus HOM05D004174 ORTHO05D004624 1.8e-174 616.3 447 71.1
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 2.4e-174 615.9 404 73.3
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 3.1e-174 615.5 437 71.2
Nn8g39387 Nelumbo nucifera HOM05D004174 ORTHO05D004624 5.3e-174 614.8 448 70.3
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 9.1e-174 614.0 408 73.8
Duzib150G0384 Durio zibethinus HOM05D004174 ORTHO05D004624 2.0e-173 612.8 409 74.8
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 7.7e-173 610.9 395 74.9
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 1.7e-172 609.8 434 71.2
Duzib187G0531 Durio zibethinus HOM05D004174 ORTHO05D004624 2.5e-171 605.9 431 72.6
EL10Ac8g18616 Beta vulgaris HOM05D004174 ORTHO05D004624 5.5e-171 604.7 443 69.8
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 7.2e-171 604.4 413 71.7
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 1.2e-170 603.6 401 75.3
DCAR_017828 Daucus carota HOM05D004174 ORTHO05D004624 6.1e-170 601.3 406 72.2
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 1.4e-169 600.1 404 72.3
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 1.4e-169 600.1 408 72.3
CsaV3_2G002690 Cucumis sativus L. HOM05D004174 ORTHO05D004624 3.0e-169 599.0 413 70.9
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 1.2e-168 597.0 410 73.4
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 4.4e-168 595.1 447 69.1
SalBow3G2402 Salvia bowleyana HOM05D004174 ORTHO05D004624 9.7e-168 594.0 430 71.9
Medtr2g054680 Medicago truncatula HOM05D004174 ORTHO05D004624 1.3e-167 593.6 433 71.1
Psat1g025760 Pisum sativum HOM05D004174 ORTHO05D004624 1.7e-167 593.2 412 73.5
THA.LOC104799651 Tarenaya hassleriana HOM05D004174 ORTHO05D004624 2.2e-167 592.8 414 70.5
Phvul.009G197200 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 2.8e-167 592.4 445 68.1
Carub.0006s1845 Capsella rubella HOM05D004174 ORTHO05D004624 3.7e-167 592.0 447 68.0
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 1.4e-166 590.1 455 67.3
CARHR192760 Cardamine hirsuta HOM05D004174 ORTHO05D004624 4.1e-166 588.6 447 67.1
AT5G20070 Arabidopsis thaliana HOM05D004174 ORTHO05D004624 5.3e-166 588.2 427 68.4
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 1.6e-165 586.6 425 70.1
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 2.0e-165 586.3 447 67.6
Ca_03159_v3 Cicer arietinum L. HOM05D004174 ORTHO05D004624 2.7e-165 585.9 437 69.3
Sc18g0000710 Simmondsia chinensis HOM05D004174 ORTHO05D004624 2.7e-165 585.9 389 73.3
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 3.5e-165 585.5 448 66.5
COL.COLO4_17917 Corchorus olitorius HOM05D004174 ORTHO05D004624 4.5e-165 585.1 402 73.1
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 5.9e-165 584.7 417 72.9
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 2.9e-164 582.4 439 68.1
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 5.0e-164 581.6 394 73.9
VMungo1309G2067 Vigna mungo HOM05D004174 ORTHO05D004624 1.1e-163 580.5 443 66.8
HanXRQChr12g0368841 Helianthus annuus HOM05D004174 ORTHO05D004624 1.5e-163 580.1 414 70.5
Lsat_1_v5_gn_8_58900 Lactuca sativa HOM05D004174 ORTHO05D004624 2.1e-162 576.2 391 71.4
SGA_v2.0_scaffold229G43324 Striga asiatica HOM05D004174 ORTHO05D004624 2.1e-162 576.2 421 69.1
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 2.7e-162 575.9 389 71.7
Sp6g24340 Schrenkiella parvula HOM05D004174 ORTHO05D004624 3.6e-162 575.5 441 67.6
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 4.7e-162 575.1 422 69.2
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 4.7e-162 575.1 406 70.7
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 4.7e-162 575.1 406 70.7
Lalb_Chr23g0275331 Lupinus albus HOM05D004174 ORTHO05D004624 8.0e-162 574.3 454 66.5
TPR.G31095 Trifolium pratense HOM05D004174 ORTHO05D004624 8.0e-162 574.3 455 68.4
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 1.8e-161 573.2 494 63.0
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 2.3e-161 572.8 407 70.3
Lj1g0010752 Lotus japonicus HOM05D004174 ORTHO05D004624 4.0e-161 572.0 424 71.2
HanXRQChr06g0180241 Helianthus annuus HOM05D004174 ORTHO05D004624 3.4e-160 568.9 407 70.0
Rhsim03G0246500 Rhododendron simsii HOM05D004174 ORTHO05D004624 1.7e-159 566.6 347 81.3
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 2.2e-159 566.2 431 66.8
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 2.8e-159 565.8 425 68.9
BNapus_Darmor_BZH_scaffold_38p01820 Brassica napus HOM05D004174 ORTHO05D004624 1.1e-158 563.9 406 70.0
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 1.1e-158 563.9 431 66.6
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 1.4e-158 563.5 416 68.8
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 1.4e-158 563.5 416 68.8
HanXRQChr03g0062501 Helianthus annuus HOM05D004174 ORTHO05D004624 5.4e-158 561.6 392 70.7
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 9.1e-158 560.8 404 69.8
Glyma.06G216700 Glycine max HOM05D004174 ORTHO05D004624 2.0e-157 559.7 411 70.6
PSO170G6838 Papaver somniferum HOM05D004174 ORTHO05D004624 2.0e-157 559.7 420 68.6
PSO455G0049 Papaver somniferum HOM05D004174 ORTHO05D004624 3.5e-157 558.9 422 68.2
Gohir.D08G260000 Gossypium hirsutum HOM05D004174 ORTHO05D004624 1.3e-156 557.0 404 69.6
Lsat_1_v5_gn_7_42401 Lactuca sativa HOM05D004174 ORTHO05D004624 2.3e-156 556.2 389 69.4
Gorai.004G277900 Gossypium raimondii HOM05D004174 ORTHO05D004624 1.1e-155 553.9 411 68.9
GSVIVG01015501001 Vitis vinifera HOM05D004174 ORTHO05D004624 9.8e-152 540.8 315 83.5
arahy.Tifrunner.gnm1.ann1.SBVG8E Arachis hypogaea HOM05D004174 ORTHO05D004624 3.7e-151 538.9 434 64.1
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 5.4e-150 535.0 409 67.2
ATR1156G006 Amborella trichopoda HOM05D004174 ORTHO05D004624 7.0e-150 534.6 447 64.0
Psat4g040360 Pisum sativum HOM05D004174 ORTHO05D004624 7.0e-150 534.6 382 68.3
arahy.Tifrunner.gnm1.ann1.E6UBTJ Arachis hypogaea HOM05D004174 ORTHO05D004624 2.7e-149 532.7 446 62.8
DCAR_009201 Daucus carota HOM05D004174 ORTHO05D004624 7.8e-149 531.2 392 66.8
AUR62033476 Chenopodium quinoa HOM05D004174 ORTHO05D004624 2.3e-148 529.6 433 63.3
TPR.G10694 Trifolium pratense HOM05D004174 ORTHO05D004624 3.9e-148 528.9 416 64.9
Glyma.17G116600 Glycine max HOM05D004174 ORTHO05D004624 1.9e-147 526.6 420 64.3
Medtr4g113990 Medicago truncatula HOM05D004174 ORTHO05D004624 5.6e-147 525.0 382 68.3
MELO3C026643.2 Cucumis melo HOM05D004174 ORTHO05D004624 1.0e-145 520.8 400 65.0
Dinv41532 Davidia involucrata HOM05D004174 ORTHO05D004624 4.0e-145 518.8 342 74.3
Lalb_Chr07g0178801 Lupinus albus HOM05D004174 ORTHO05D004624 8.9e-145 517.7 382 66.8
VMungo1215G2625 Vigna mungo HOM05D004174 ORTHO05D004624 2.6e-144 516.2 385 67.5
Phvul.003G162700 Phaseolus vulgaris HOM05D004174 ORTHO05D004624 5.8e-144 515.0 385 67.5
HPP92_000685 Vanilla planifolia HOM05D004174 ORTHO05D004624 5.4e-142 508.4 389 65.3
HPP92_000661 Vanilla planifolia HOM05D004174 ORTHO05D004624 4.6e-141 505.4 428 61.2
CDE02G3646 Ceratophyllum demersum HOM05D004174 ORTHO05D004624 7.8e-141 504.6 386 65.0
Zm00001eb377430 Zea mays HOM05D004174 ORTHO05D004624 8.6e-140 501.1 418 65.3
Sed0008859 Sechium edule HOM05D004174 ORTHO05D004624 1.1e-139 500.7 390 63.3
ECA240G3275 Erigeron canadensis HOM05D004174 ORTHO05D004624 2.8e-138 496.1 334 71.3
Os06g0141166 Oryza sativa ssp. japonica HOM05D004174 ORTHO05D004624 4.6e-133 478.8 419 62.3
ClCG06G010920 Citrullus lanatus HOM05D004174 ORTHO05D004624 7.5e-128 461.5 396 58.8
SEGI_17043 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 6.4e-127 458.4 387 60.5
FAN26G0665 Fragaria x ananassa HOM05D004174 ORTHO05D004624 6.0e-125 451.8 263 82.5
Lj7A632G45 Lonicera japonica HOM05D004174 ORTHO05D004624 2.7e-117 426.4 279 72.4
Ah.02g124290 Amaranthus hybridus HOM05D004174 ORTHO05D004624 5.4e-110 402.1 252 76.6
Ah.14g080300 Amaranthus hybridus HOM05D004174 ORTHO05D004624 7.1e-110 401.7 248 77.4
Gohir.A08G239300 Gossypium hirsutum HOM05D004174 ORTHO05D004624 3.3e-107 392.9 282 69.5
Lj4g0002160 Lotus japonicus HOM05D004174 ORTHO05D004624 1.3e-100 370.9 280 66.1
AagrBONN_evm.TU.Sc2ySwM_368.699 Anthoceros agrestis HOM05D004174 ORTHO05D004624 2.4e-97 360.1 384 50.5
Pp3c3_2090 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.2e-93 347.8 397 48.1
Mapoly0103s0044 Marchantia polymorpha HOM05D004174 ORTHO05D004624 1.0e-92 344.7 420 46.2
SEGI_09002 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.9e-91 340.5 272 59.6
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 7.6e-88 328.6 234 67.5
SMO169G0291 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 8.4e-87 325.1 250 63.2
AUR62030487 Chenopodium quinoa HOM05D004174 ORTHO05D004624 6.3e-74 282.3 172 80.2
AUR62011109 Chenopodium quinoa HOM05D004174 ORTHO05D004624 1.5e-72 277.7 197 73.1
Glyma.05G008302 Glycine max HOM05D004174 ORTHO05D004624 2.0e-67 260.8 176 73.3
SEGI_03330 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.7e-63 247.7 279 47.0
Cpa.g.sc648.3 Carica papaya HOM05D004174 ORTHO05D004624 2.9e-63 246.9 204 66.2
BolC2t07007H Brassica oleracea HOM05D004174 ORTHO05D004624 1.6e-56 224.6 202 56.4
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.9e-55 220.3 193 59.6
Ah.14g080310 Amaranthus hybridus HOM05D004174 ORTHO05D004624 4.7e-45 186.4 200 52.0
Cc11_g15180 Coffea canephora HOM05D004174 ORTHO05D004624 1.0e-44 185.3 118 80.5
AUR62015314 Chenopodium quinoa HOM05D004174 ORTHO05D004624 3.4e-43 180.3 146 62.3
Sabra06G0122300 Salix brachista HOM05D004174 ORTHO05D004624 6.6e-39 166.0 242 44.2
Cre09.g396900 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 1.5e-38 164.9 227 40.5
Haze_27339 Corylus avellana HOM05D004174 ORTHO05D004624 3.4e-35 153.7 181 49.2
MD02G1035400 Malus domestica HOM05D004174 ORTHO05D004624 1.8e-33 147.9 82 80.5
SEGI_13131 Sequoiadendron giganteum HOM05D004174 ORTHO05D004624 1.1e-30 138.7 298 33.2
Pp3c14_12120 Physcomitrium patens HOM05D004174 ORTHO05D004624 1.2e-29 135.2 254 36.2
Cfa023976 Carpinus fangiana HOM05D003934 ORTHO05D005108 4.7e-29 133.3 416 28.8
Lj4C460T3 Lonicera japonica HOM05D004174 ORTHO05D004624 6.8e-28 129.4 77 80.5
MCO10G159 Micromonas commoda HOM05D004174 ORTHO05D004624 1.9e-25 121.3 350 28.3
Mapoly0019s0154 Marchantia polymorpha HOM05D004174 ORTHO05D004624 2.7e-24 117.5 268 34.0
Ah.12g053390 Amaranthus hybridus HOM05D004174 ORTHO05D004624 5.6e-22 109.8 69 76.8
Ah.12g055680 Amaranthus hybridus HOM05D004174 ORTHO05D004624 1.6e-21 108.2 69 75.4
Ah.05g171270 Amaranthus hybridus HOM05D004174 ORTHO05D004624 2.8e-21 107.5 69 75.4
CBR_g46446 Chara braunii HOM05D004174 ORTHO05D004624 4.0e-20 103.6 249 30.5
PRCOL_00006603 Prasinoderma coloniale HOM05D004174 ORTHO05D004624 1.5e-19 101.7 141 37.6
VMungo0647G2130 Vigna mungo HOM05D004174 ORTHO05D004624 4.9e-18 96.7 146 41.1
Cre13.g582476 Chlamydomonas reinhardtii HOM05D004174 ORTHO05D004624 2.5e-14 84.3 170 33.5
Psat3g000160 Pisum sativum HOM05D004174 ORTHO05D004624 1.6e-13 81.6 117 41.9
VMungo1215G0447 Vigna mungo HOM05D006361 ORTHO05D007824 1.1e-09 68.9 67 47.8
SMO141G0190 Selaginella moellendorffii HOM05D004174 ORTHO05D004624 1.4e-09 68.6 120 39.2
Ah.12g053410 Amaranthus hybridus HOM05D004174 ORTHO05D004624 6.0e-08 63.2 38 73.7


User provided reference genes

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