Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 1.3e-173 612.8 294 100.0
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 7.5e-124 447.6 248 86.3
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 8.2e-123 444.1 245 86.9
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 1.2e-118 430.3 240 83.8
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 3.1e-114 415.6 239 82.0
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 4.5e-113 411.8 242 80.6
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 7.7e-113 411.0 242 80.2
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 1.0e-112 410.6 242 80.2
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 1.7e-112 409.8 242 81.4
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 2.2e-112 409.5 238 82.4
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 2.9e-112 409.1 235 81.3
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 6.5e-112 407.9 242 80.2
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 2.1e-110 402.9 240 80.8
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 4.7e-110 401.7 235 79.6
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 6.1e-110 401.4 238 81.1
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 2.3e-109 399.4 238 78.6
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 3.0e-109 399.1 237 80.2
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 5.2e-109 398.3 237 78.1
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 5.2e-109 398.3 239 78.7
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 1.5e-108 396.7 237 79.7
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 1.7e-107 393.3 235 77.0
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 8.3e-107 391.0 243 76.5
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 1.1e-106 390.6 238 79.8
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 7.0e-106 387.9 241 73.9
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 2.7e-105 386.0 236 75.4
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 5.9e-105 384.8 237 77.6
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 5.9e-105 384.8 238 76.5
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 1.0e-104 384.0 237 76.8
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.3e-104 383.6 238 76.9
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 1.7e-104 383.3 237 76.8
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 2.3e-104 382.9 239 74.9
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 3.8e-104 382.1 235 74.9
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 5.0e-104 381.7 238 74.8
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 5.0e-104 381.7 238 75.6
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 5.0e-104 381.7 237 77.2
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 8.6e-104 380.9 235 74.5
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 8.6e-104 380.9 235 76.6
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 1.5e-103 380.2 235 74.0
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 2.5e-103 379.4 238 76.5
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 2.5e-103 379.4 237 74.7
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 4.3e-103 378.6 235 72.8
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 5.6e-103 378.3 243 72.0
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 7.3e-103 377.9 238 76.9
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 9.5e-103 377.5 244 74.2
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 9.5e-103 377.5 237 76.4
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 1.2e-102 377.1 240 76.2
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 1.2e-102 377.1 240 76.2
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.6e-102 376.7 243 71.2
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 3.6e-102 375.6 266 69.9
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 4.7e-102 375.2 235 73.6
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 8.0e-102 374.4 240 75.4
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 1.0e-101 374.0 243 73.3
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 3.0e-101 372.5 240 72.5
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 4.0e-101 372.1 265 67.5
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 5.2e-101 371.7 237 72.2
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 1.5e-100 370.2 236 75.4
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 1.5e-100 370.2 238 74.8
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 1.5e-100 370.2 239 75.3
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 1.5e-100 370.2 238 74.8
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 1.5e-100 370.2 239 75.3
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 3.4e-100 369.0 228 73.7
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 4.4e-100 368.6 239 74.1
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 5.7e-100 368.2 238 74.4
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 5.7e-100 368.2 239 71.1
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 7.5e-100 367.9 237 73.4
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 7.5e-100 367.9 237 73.8
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 2.2e-99 366.3 236 74.6
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 2.9e-99 365.9 247 69.6
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 3.7e-99 365.5 239 72.0
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 1.8e-98 363.2 238 73.9
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 1.8e-98 363.2 238 73.9
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 1.8e-98 363.2 238 73.9
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 4.6e-97 358.6 241 71.8
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 4.6e-97 358.6 241 71.8
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 8.6e-96 354.4 240 68.8
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 8.6e-96 354.4 240 68.8
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 8.6e-96 354.4 272 64.3
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 1.9e-95 353.2 217 74.7
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.6e-92 342.8 351 51.6
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 3.4e-92 342.4 241 68.0
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 2.2e-91 339.7 311 55.0
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 3.7e-91 339.0 235 69.4
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 3.2e-90 335.9 236 65.3
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 5.4e-90 335.1 252 65.5
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 7.0e-90 334.7 274 59.9
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.2e-89 334.0 344 51.5
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 1.2e-89 334.0 274 59.9
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 7.8e-89 331.3 270 59.6
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 5.6e-87 325.1 194 79.4
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 8.9e-85 317.8 211 72.5
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 1.7e-83 313.5 236 65.3
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 2.4e-82 309.7 240 59.6
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 3.2e-82 309.3 249 60.6
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 7.8e-81 304.7 237 64.6
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 6.6e-80 301.6 228 63.6
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 1.1e-79 300.8 281 55.9
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.9e-79 300.1 236 62.3
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 2.5e-79 299.7 242 61.2
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 9.5e-79 297.7 237 62.9
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 2.8e-78 296.2 194 70.1
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 4.7e-78 295.4 216 64.8
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 6.2e-78 295.0 189 73.0
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 6.4e-75 285.0 188 71.3
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 2.5e-71 273.1 230 60.4
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 1.2e-70 270.8 235 55.7
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 3.2e-66 256.1 144 80.6
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 7.8e-65 251.5 252 50.4
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 2.3e-64 250.0 263 50.2
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 3.8e-59 232.6 194 62.4
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 1.6e-57 227.3 224 47.8
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 1.1e-55 221.1 246 46.7
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 1.5e-55 220.7 200 56.5
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 1.1e-53 214.5 236 44.5
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 1.8e-45 187.2 102 82.4
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 4.6e-41 172.6 114 69.3
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 1.0e-40 171.4 111 70.3
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 9.0e-37 158.3 98 77.6
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 1.1e-31 141.4 90 72.2
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 2.5e-31 140.2 99 70.7
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 7.4e-31 138.7 94 69.1
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 8.2e-30 135.2 95 72.6
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 4.5e-28 129.4 87 71.3
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 2.9e-27 126.7 89 68.5
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 2.9e-27 126.7 93 64.5
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 1.9e-26 124.0 91 67.0
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 3.3e-23 113.2 61 82.0
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 1.7e-22 110.9 75 73.3
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 4.8e-22 109.4 101 52.5
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 1.4e-21 107.8 112 49.1
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 2.6e-20 103.6 52 88.5
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 4.5e-20 102.8 74 64.9
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 2.2e-19 100.5 55 76.4
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 2.7e-17 93.6 50 84.0
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.2e-12 78.2 37 86.5
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.0e-11 75.1 65 60.0
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 1.3e-11 74.7 36 77.8
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 9.4e-10 68.6 34 88.2
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 2.3e-08 63.9 53 54.7
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 7.5e-07 58.9 33 69.7
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 7.5e-07 58.9 33 69.7
Dinv27620 Davidia involucrata HOM05D002609 ORTHO05D002820 2.8e-06 57.0 144 25.0
GSVIVG01011715001 Vitis vinifera HOM05D002609 ORTHO05D002820 3.7e-06 56.6 161 28.0
MSTRG.4577 Avicennia marina HOM05D002609 ORTHO05D002820 6.3e-06 55.8 146 26.7
Nitab4.5_0007327g0030 Nicotiana tabacum HOM05D002609 ORTHO05D002820 6.3e-06 55.8 146 28.8


User provided reference genes

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