Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 2.5e-306 1054.7 561 100.0
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 1.7e-222 776.2 570 73.7
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 3.0e-222 775.4 573 73.1
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 1.7e-217 759.6 564 72.5
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 1.2e-210 736.9 551 71.7
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.3e-209 733.4 551 71.5
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 9.3e-208 727.2 554 69.9
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 1.6e-207 726.5 564 69.1
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 1.6e-204 716.5 558 69.2
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 2.4e-203 712.6 561 68.3
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 5.8e-202 708.0 549 69.9
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 3.8e-201 705.3 555 69.4
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 7.9e-199 697.6 559 67.4
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 7.9e-199 697.6 561 68.6
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 7.9e-199 697.6 585 66.8
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.8e-198 696.4 565 66.2
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 2.3e-198 696.0 567 67.9
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 3.9e-198 695.3 585 66.7
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 3.9e-198 695.3 560 68.2
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 8.7e-198 694.1 564 67.0
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 1.5e-197 693.3 557 68.0
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 4.3e-197 691.8 563 66.8
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 5.7e-197 691.4 561 67.9
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 2.1e-196 689.5 562 67.6
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 2.1e-196 689.5 562 66.9
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 6.3e-196 688.0 561 67.6
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 1.1e-195 687.2 563 65.0
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 1.4e-195 686.8 557 67.5
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 2.4e-195 686.0 569 65.6
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 3.8e-193 678.7 565 65.1
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.5e-193 677.9 575 65.6
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.4e-192 676.8 561 66.7
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 1.9e-192 676.4 563 65.0
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 4.2e-192 675.2 559 65.3
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 4.2e-192 675.2 557 66.6
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.1e-191 672.9 577 65.2
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.1e-189 667.2 575 64.9
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 6.3e-188 661.4 561 63.8
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.4e-187 660.2 562 63.9
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 5.3e-187 658.3 566 63.8
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 2.0e-186 656.4 567 63.5
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 3.4e-186 655.6 558 63.8
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 5.0e-185 651.7 557 63.7
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 4.2e-184 648.7 569 63.1
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 5.5e-184 648.3 569 62.9
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 2.1e-183 646.4 555 62.3
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 2.7e-183 646.0 572 62.6
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 1.4e-182 643.7 562 63.0
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 3.0e-182 642.5 567 63.3
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 3.9e-182 642.1 561 63.1
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 3.9e-182 642.1 555 63.6
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 6.7e-182 641.3 558 62.7
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 6.7e-182 641.3 566 64.0
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 6.7e-182 641.3 564 61.9
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 8.8e-182 641.0 563 61.6
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 1.1e-181 640.6 563 63.8
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 1.1e-181 640.6 567 63.3
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 1.1e-181 640.6 659 55.7
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 3.3e-181 639.0 551 61.9
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 5.7e-181 638.3 546 63.6
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 6.3e-180 634.8 564 62.4
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 8.2e-180 634.4 561 64.2
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 4.1e-179 632.1 558 62.4
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.9e-179 631.3 566 63.1
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.2e-177 626.3 562 62.5
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 8.5e-177 624.4 562 62.3
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 1.9e-176 623.2 569 61.9
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 4.2e-176 622.1 569 60.5
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 5.5e-176 621.7 554 62.5
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 1.6e-175 620.2 561 60.8
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 2.1e-175 619.8 570 61.8
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 3.9e-174 615.5 557 60.5
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 9.7e-173 610.9 551 60.8
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 3.7e-172 609.0 561 60.2
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 6.3e-172 608.2 557 60.5
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 8.2e-172 607.8 564 57.4
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 3.1e-171 605.9 548 62.4
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 1.2e-170 604.0 555 61.1
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 5.0e-169 598.6 546 60.3
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 5.2e-166 588.6 561 58.1
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 3.3e-165 585.9 568 57.9
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 1.8e-163 580.1 580 56.6
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 1.8e-163 580.1 577 57.2
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 1.0e-161 574.3 546 56.8
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 2.2e-161 573.2 581 55.8
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 8.5e-161 571.2 562 58.7
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 1.5e-160 570.5 548 57.5
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 2.5e-160 569.7 550 56.7
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 3.2e-160 569.3 564 56.2
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 1.4e-158 563.9 565 56.8
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 9.8e-157 557.8 572 55.6
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 2.2e-156 556.6 573 55.0
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 2.2e-156 556.6 435 70.3
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 2.4e-155 553.1 569 55.4
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 3.1e-155 552.7 563 56.5
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 9.1e-155 551.2 556 56.1
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 1.2e-154 550.8 569 55.2
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 1.2e-154 550.8 556 56.1
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 3.0e-150 536.2 566 55.7
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 2.0e-149 533.5 581 55.4
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 6.3e-148 528.5 546 52.6
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 7.7e-146 521.5 423 68.3
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 1.3e-145 520.8 557 55.5
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 4.0e-142 509.2 419 67.3
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.0e-137 494.6 447 59.1
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 1.8e-134 483.8 568 51.2
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.1e-134 483.0 531 54.8
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 5.8e-133 478.8 555 48.3
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 8.3e-132 474.9 501 56.7
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 7.1e-123 445.3 560 47.3
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 3.3e-120 436.4 369 64.5
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 1.1e-118 431.4 558 47.7
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.4e-118 431.0 299 74.9
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 4.4e-117 426.0 552 45.1
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 3.0e-113 413.3 552 44.0
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 1.1e-110 404.8 281 73.7
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 3.3e-104 383.3 562 41.8
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 3.9e-97 359.8 381 54.1
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 9.3e-91 338.6 465 46.7
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 4.2e-83 313.2 473 44.4
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 1.6e-82 311.2 343 54.8
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 6.0e-82 309.3 307 57.0
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 2.4e-78 297.4 589 38.7
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.9e-67 261.2 231 62.3
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 6.7e-65 252.7 173 72.8
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 2.8e-63 247.3 494 38.1
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 3.7e-63 246.9 225 60.4
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 3.2e-59 233.8 157 73.9
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 3.0e-57 227.3 409 36.2
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.2e-47 194.5 141 74.5
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 3.8e-44 183.7 138 71.0
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 5.0e-44 183.3 320 41.2
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 5.7e-40 169.9 118 75.4
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-39 168.7 139 67.6
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 6.3e-39 166.4 118 73.7
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 4.2e-35 153.7 141 53.9
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 3.1e-30 137.5 287 37.3
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-27 129.0 178 41.6
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 2.1e-26 124.8 152 48.7
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.3e-20 105.5 102 51.0
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 2.5e-19 101.3 86 65.1
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 1.6e-18 98.6 90 62.2
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 4.0e-17 94.0 56 71.4
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 2.2e-15 88.2 165 39.4
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 2.0e-13 81.6 167 35.3
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 1.7e-12 78.6 67 62.7
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 1.5e-11 75.5 165 37.0
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 3.6e-10 70.9 42 78.6
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 1.4e-09 68.9 51 68.6
RcHm_v2.0_Chr1g0341151 Rosa chinensis HOM05D004469 ORTHO05D005429 1.8e-09 68.6 157 32.5
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 1.5e-08 65.5 48 68.8
Os04g0644300 Oryza sativa ssp. japonica HOM05D004469 ORTHO05D005429 6.4e-07 60.1 180 32.2
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 4.1e-06 57.4 81 42.0
Thecc.08G193600 Theobroma cacao HOM05D004469 ORTHO05D005429 7.1e-06 56.6 51 54.9
vmacro11088 Vaccinium macrocarpon HOM05D004469 ORTHO05D426737 7.1e-06 56.6 44 56.8


User provided reference genes

Program Settings