Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 1.8e-168 595.9 304 100.0
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 3.2e-130 468.8 304 78.3
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 1.1e-127 460.3 305 79.7
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 2.6e-127 459.1 298 79.2
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 1.3e-123 446.8 276 80.8
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 1.7e-123 446.4 307 76.9
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 6.5e-123 444.5 287 78.0
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 1.5e-122 443.4 305 77.7
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.9e-122 443.0 289 79.9
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.9e-122 443.0 289 79.9
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 3.2e-122 442.2 295 78.3
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 4.0e-120 435.3 305 75.7
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 1.5e-119 433.3 286 78.0
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 2.6e-119 432.6 289 77.5
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 2.6e-119 432.6 304 75.0
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.6e-119 432.6 304 75.0
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 4.4e-119 431.8 304 75.3
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 4.4e-119 431.8 304 74.0
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 5.7e-119 431.4 334 70.1
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 9.7e-119 430.6 289 76.8
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 9.7e-119 430.6 304 74.7
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.7e-118 429.9 304 74.3
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 3.7e-118 428.7 303 71.9
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 3.7e-118 428.7 286 76.9
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 4.8e-118 428.3 304 73.4
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 6.3e-118 427.9 321 73.5
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 8.3e-118 427.6 281 78.3
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 1.1e-117 427.2 304 74.0
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 1.4e-117 426.8 306 74.8
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.4e-117 426.8 304 74.0
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 2.4e-117 426.0 305 71.8
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 2.4e-117 426.0 289 73.7
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 3.1e-117 425.6 304 75.0
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 5.3e-117 424.9 304 70.7
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 7.0e-117 424.5 290 75.2
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 1.6e-116 423.3 289 74.0
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 1.6e-116 423.3 306 72.5
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 1.6e-116 423.3 306 72.5
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 1.6e-116 423.3 307 73.6
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 2.7e-116 422.5 307 71.7
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 2.7e-116 422.5 307 71.7
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 4.5e-116 421.8 305 72.5
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 4.5e-116 421.8 333 69.4
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 5.9e-116 421.4 302 70.5
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 5.9e-116 421.4 292 73.6
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 7.7e-116 421.0 307 73.3
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.3e-115 420.2 304 74.0
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 1.3e-115 420.2 297 72.4
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 1.3e-115 420.2 297 72.4
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 1.3e-115 420.2 307 73.0
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 2.2e-115 419.5 289 73.0
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 2.2e-115 419.5 303 72.6
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 3.8e-115 418.7 304 70.4
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 3.8e-115 418.7 287 77.4
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 5.0e-115 418.3 326 69.6
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 5.0e-115 418.3 309 72.5
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 1.1e-114 417.2 306 71.9
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 1.1e-114 417.2 305 69.8
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 1.9e-114 416.4 306 69.6
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.9e-114 416.4 304 73.0
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 5.5e-114 414.8 291 72.5
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 2.1e-113 412.9 305 70.5
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 2.7e-113 412.5 279 73.5
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 2.7e-113 412.5 279 73.5
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 8.0e-113 411.0 263 78.3
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 1.4e-112 410.2 276 76.8
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 1.8e-112 409.8 304 68.8
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.8e-112 407.9 258 78.7
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 6.8e-112 407.9 289 70.9
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 6.8e-112 407.9 299 70.6
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 9.8e-111 404.1 275 73.1
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 2.2e-110 402.9 275 72.7
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 2.2e-110 402.9 267 73.8
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 3.1e-109 399.1 307 71.0
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 4.1e-109 398.7 300 68.3
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 5.4e-109 398.3 262 74.0
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 7.0e-109 397.9 248 79.4
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 9.1e-109 397.5 278 74.1
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 4.5e-108 395.2 280 73.2
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 7.7e-108 394.4 267 74.9
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 1.7e-107 393.3 308 69.2
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 2.9e-107 392.5 317 67.5
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.8e-107 392.1 258 76.7
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 1.9e-106 389.8 277 71.8
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 3.3e-106 389.0 312 69.6
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 3.3e-106 389.0 306 66.3
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 6.1e-105 384.8 287 70.7
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.0e-104 384.0 256 73.8
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 1.8e-104 383.3 238 76.5
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 3.0e-104 382.5 284 70.4
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 4.0e-104 382.1 304 69.7
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 2.6e-103 379.4 281 71.2
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 2.6e-103 379.4 293 69.6
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 3.4e-103 379.0 305 65.2
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 5.7e-103 378.3 265 74.0
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 9.8e-103 377.5 275 70.5
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 9.8e-103 377.5 285 70.2
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 1.3e-102 377.1 289 69.6
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 1.7e-102 376.7 261 69.0
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 2.8e-102 375.9 261 68.6
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 6.3e-102 374.8 314 66.9
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 2.4e-101 372.9 275 69.1
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 2.0e-100 369.8 255 74.9
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 1.0e-99 367.5 288 68.1
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 1.0e-99 367.5 278 68.0
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 5.0e-99 365.2 304 65.1
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.5e-98 363.6 308 63.6
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 9.5e-98 360.9 235 75.3
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 6.1e-97 358.2 295 65.8
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 8.9e-96 354.4 274 66.4
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 4.4e-95 352.1 300 64.7
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 6.6e-91 338.2 308 61.7
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 1.9e-90 336.7 255 67.5
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 1.2e-89 334.0 248 71.0
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 2.6e-87 326.2 296 56.8
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 9.2e-85 317.8 269 62.8
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 1.7e-83 313.5 291 57.4
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 2.5e-82 309.7 259 61.0
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 5.6e-82 308.5 286 59.1
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 3.1e-80 302.8 209 77.5
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 2.9e-78 296.2 280 55.0
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 4.1e-77 292.4 255 58.4
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 1.7e-75 287.0 276 56.2
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 8.6e-75 284.6 176 81.2
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 1.5e-74 283.9 259 56.8
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.1e-72 277.7 305 49.8
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 4.6e-68 262.3 178 73.6
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 1.0e-67 261.2 293 49.5
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 1.2e-63 247.7 142 86.6
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 7.1e-61 238.4 253 52.6
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 2.1e-60 236.9 213 55.4
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 2.7e-60 236.5 142 81.7
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 6.0e-60 235.3 142 80.3
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 6.4e-54 215.3 182 63.7
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 2.1e-49 200.3 155 64.5
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 4.8e-49 199.1 162 66.7
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 8.1e-49 198.4 114 86.0
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.4e-48 197.6 127 78.7
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 3.4e-47 193.0 287 40.4
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.8e-43 180.6 223 48.9
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 3.0e-43 179.9 238 46.2
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 3.5e-36 156.4 255 39.2
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 1.3e-35 154.5 271 39.1
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 1.0e-30 138.3 84 79.8
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 2.2e-30 137.1 156 53.2
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 3.8e-30 136.3 129 55.0
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 1.8e-27 127.5 82 73.2
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 9.7e-26 121.7 86 69.8
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 5.3e-24 115.9 72 76.4
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 1.5e-23 114.4 184 39.1
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 1.3e-22 111.3 193 42.0
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.7e-22 110.9 61 82.0
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 5.5e-21 105.9 132 49.2
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.1e-18 98.2 62 74.2
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 3.1e-16 90.1 50 86.0
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 4.5e-15 86.3 265 27.2
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 2.9e-14 83.6 154 31.2
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 4.2e-13 79.7 168 31.0
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 2.7e-12 77.0 279 22.9
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 5.2e-11 72.8 142 28.2
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 7.5e-10 68.9 156 30.1
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 3.5e-07 60.1 40 72.5
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 3.5e-07 60.1 40 72.5
SEGI_37569 Sequoiadendron giganteum HOM05D004215 ORTHO05D018306 5.9e-07 59.3 130 28.5
CARHR020500 Cardamine hirsuta HOM05D000565 ORTHO05D004389 5.0e-06 56.2 168 28.0
Duzib187G1458 Durio zibethinus HOM05D000565 ORTHO05D004389 6.5e-06 55.8 176 27.3
Thhalv10007988m.g Eutrema salsugineum HOM05D000565 ORTHO05D004389 6.5e-06 55.8 170 26.5


User provided reference genes

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