Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 1.5e-206 722.6 376 100.0
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 7.0e-135 484.6 363 71.3
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 1.2e-134 483.8 362 71.0
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 2.3e-133 479.6 363 70.5
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 4.3e-132 475.3 364 68.7
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 1.8e-130 469.9 363 67.8
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 1.9e-127 459.9 366 66.9
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 1.2e-126 457.2 364 64.3
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 4.6e-126 455.3 366 65.8
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 1.7e-125 453.4 361 67.0
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 1.1e-124 450.7 364 64.8
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 1.5e-124 450.3 364 63.7
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 1.9e-124 449.9 360 65.3
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 5.6e-124 448.4 363 65.0
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 7.3e-124 448.0 363 65.0
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 1.2e-123 447.2 364 64.0
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 1.6e-123 446.8 364 64.3
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 2.1e-123 446.4 363 63.9
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 2.8e-123 446.0 363 64.2
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 4.0e-122 442.2 362 63.5
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 8.9e-122 441.0 362 64.1
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 1.3e-120 437.2 406 57.9
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 2.9e-120 436.0 368 63.3
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 1.4e-119 433.7 369 62.3
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 3.5e-118 429.1 363 63.1
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.0e-117 427.6 363 62.3
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 3.0e-117 426.0 363 64.2
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 3.9e-117 425.6 365 60.3
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 6.6e-117 424.9 365 61.6
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 3.3e-116 422.5 365 61.4
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 5.6e-116 421.8 364 60.2
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 7.3e-116 421.4 340 65.3
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 4.7e-115 418.7 364 62.1
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 4.7e-115 418.7 363 60.6
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 6.2e-115 418.3 367 59.9
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 8.1e-115 417.9 363 60.6
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.1e-114 417.5 364 60.2
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 1.4e-114 417.2 368 60.3
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 2.4e-114 416.4 365 61.4
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 2.4e-114 416.4 365 61.9
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 3.1e-114 416.0 366 62.6
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 4.0e-114 415.6 364 59.3
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 4.0e-114 415.6 364 59.3
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 5.2e-114 415.2 364 59.1
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 6.8e-114 414.8 358 62.0
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.2e-113 414.1 364 59.1
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 1.5e-113 413.7 363 60.1
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 9.9e-113 411.0 364 59.1
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 9.9e-113 411.0 363 60.1
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 2.9e-112 409.5 365 60.3
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 3.8e-112 409.1 364 61.0
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 1.9e-111 406.8 368 61.1
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 1.2e-110 404.1 366 59.6
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 2.1e-110 403.3 346 62.4
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 3.5e-110 402.5 427 52.5
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 1.7e-109 400.2 362 58.6
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 1.5e-108 397.1 361 58.4
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 7.3e-108 394.8 363 59.0
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 2.1e-107 393.3 321 64.5
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 3.6e-107 392.5 365 56.7
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 1.2e-105 387.5 408 54.9
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 8.4e-104 381.3 345 56.8
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 1.4e-103 380.6 355 56.6
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 3.2e-103 379.4 372 56.5
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 4.2e-103 379.0 365 56.4
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 7.1e-103 378.3 352 58.2
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 2.7e-102 376.3 363 55.9
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 1.3e-101 374.0 367 55.6
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 1.3e-101 374.0 338 58.9
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 2.3e-101 373.2 365 54.5
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 3.9e-101 372.5 365 55.9
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 1.1e-100 370.9 364 56.0
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 5.6e-100 368.6 363 53.7
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 4.8e-99 365.5 363 54.8
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 1.1e-98 364.4 365 54.8
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 2.4e-98 363.2 365 55.3
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 3.1e-98 362.8 364 54.9
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 6.9e-98 361.7 362 55.2
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 9.0e-98 361.3 306 66.0
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 2.6e-97 359.8 364 52.5
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 3.4e-97 359.4 365 55.1
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 4.5e-97 359.0 363 53.7
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 7.6e-97 358.2 368 54.1
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 2.2e-96 356.7 370 53.8
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 3.8e-96 355.9 367 54.2
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 1.4e-95 354.0 366 52.2
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 3.2e-95 352.8 364 53.6
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 5.5e-95 352.1 368 54.1
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 2.1e-94 350.1 366 52.2
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 1.3e-93 347.4 395 50.6
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 3.9e-93 345.9 304 60.9
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 8.7e-93 344.7 355 51.8
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 9.6e-92 341.3 371 51.2
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 3.7e-91 339.3 366 50.0
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 6.2e-91 338.6 366 50.0
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 2.4e-90 336.7 365 53.4
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 1.5e-89 334.0 282 65.2
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 2.0e-89 333.6 363 51.8
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 5.8e-89 332.0 365 51.5
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 1.3e-88 330.9 301 59.5
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 2.2e-88 330.1 301 60.5
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 1.0e-85 321.2 364 50.0
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 7.4e-84 315.1 308 57.1
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 2.8e-83 313.2 355 50.7
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 2.8e-83 313.2 348 50.9
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 4.1e-82 309.3 320 54.4
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 5.3e-82 308.9 350 50.6
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 1.1e-76 291.2 366 44.8
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 5.9e-73 278.9 366 44.5
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 1.7e-72 277.3 362 45.6
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 5.0e-72 275.8 290 54.1
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 6.5e-72 275.4 353 46.5
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 8.5e-72 275.0 238 63.0
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 9.7e-68 261.5 246 59.8
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 4.8e-67 259.2 348 44.5
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 4.8e-67 259.2 357 41.2
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 6.9e-66 255.4 366 40.4
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 9.1e-66 255.0 274 55.8
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.4e-63 247.7 348 43.7
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 3.9e-61 239.6 356 41.9
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 1.7e-59 234.2 236 55.5
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 2.0e-57 227.3 274 49.3
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 1.3e-56 224.6 247 53.0
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 1.3e-56 224.6 358 39.7
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 2.8e-51 206.8 237 50.2
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 3.7e-51 206.5 298 41.3
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.4e-45 188.0 238 48.7
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 1.4e-45 188.0 303 39.9
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 1.9e-39 167.5 128 63.3
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 8.8e-37 158.7 358 32.1
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 8.3e-35 152.1 131 56.5
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 3.1e-34 150.2 425 28.5
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 7.0e-34 149.1 378 31.5
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 8.0e-30 135.6 190 46.3
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 8.9e-29 132.1 176 50.0
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 4.3e-23 113.2 162 39.5
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 1.2e-14 85.1 55 65.5
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 1.6e-14 84.7 56 66.1
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 4.7e-14 83.2 56 64.3
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 1.3e-11 75.1 153 34.6
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 2.4e-10 70.9 147 34.0
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 8.6e-08 62.4 156 30.8


User provided reference genes

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