Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 8.7e-295 1016.1 488 100.0
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 9.9e-214 746.9 503 71.4
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 6.4e-213 744.2 490 73.1
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 1.9e-209 732.6 472 73.3
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 3.8e-205 718.4 470 71.3
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 1.9e-204 716.1 472 71.8
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 3.5e-203 711.8 472 71.4
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 1.3e-202 709.9 481 68.6
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 4.0e-199 698.4 477 66.9
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 4.0e-199 698.4 489 67.3
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 4.4e-198 694.9 486 67.3
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 2.2e-197 692.6 481 66.9
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 7.9e-195 684.1 484 66.3
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 3.9e-194 681.8 471 66.9
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 3.6e-192 675.2 468 69.0
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.6e-192 675.2 471 67.1
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 4.8e-192 674.9 471 67.1
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 6.2e-192 674.5 475 66.3
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 1.8e-191 672.9 485 63.5
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 4.0e-191 671.8 530 62.3
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 5.3e-191 671.4 463 66.5
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 4.5e-190 668.3 468 66.5
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 1.3e-189 666.8 487 63.7
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 4.9e-189 664.8 487 62.8
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 4.2e-188 661.8 464 67.2
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 7.1e-188 661.0 486 64.6
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 7.1e-188 661.0 484 64.3
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 1.2e-187 660.2 482 64.7
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 2.7e-187 659.1 465 66.7
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 4.6e-187 658.3 479 64.5
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 7.9e-187 657.5 486 64.6
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 1.0e-186 657.1 472 64.4
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 3.0e-186 655.6 471 65.8
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 3.9e-186 655.2 491 63.5
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 8.7e-186 654.1 471 65.0
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 3.3e-185 652.1 469 65.9
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 7.4e-185 651.0 469 65.0
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 9.6e-185 650.6 471 64.3
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 9.6e-185 650.6 472 65.5
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 5.3e-183 644.8 471 63.9
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 5.1e-178 628.2 482 61.8
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 2.5e-177 625.9 467 61.9
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 9.6e-177 624.0 477 62.9
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 8.2e-176 620.9 477 61.8
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 8.2e-176 620.9 427 66.5
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 1.4e-175 620.2 481 62.0
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 1.8e-175 619.8 516 59.1
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 4.1e-175 618.6 491 61.1
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 4.1e-175 618.6 491 61.1
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 5.3e-175 618.2 477 61.8
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 9.0e-175 617.5 544 57.5
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 2.6e-174 615.9 471 60.7
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 2.6e-174 615.9 475 62.7
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 7.6e-174 614.4 486 60.9
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 5.0e-173 611.7 476 62.2
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 8.4e-173 610.9 512 58.2
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 1.4e-172 610.1 471 61.4
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 4.2e-172 608.6 470 61.9
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 5.5e-172 608.2 486 60.3
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 3.5e-171 605.5 484 60.5
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 4.6e-171 605.1 470 61.7
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 2.3e-170 602.8 467 61.2
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 3.0e-170 602.4 472 60.2
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 1.5e-169 600.1 478 59.4
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 3.3e-169 599.0 474 60.3
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 4.3e-169 598.6 484 59.1
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 7.4e-169 597.8 475 58.9
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 9.7e-169 597.4 480 60.6
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 6.3e-168 594.7 474 60.5
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 8.2e-168 594.3 475 58.9
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 2.4e-167 592.8 464 61.6
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 3.2e-164 582.4 474 59.3
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 4.2e-164 582.0 474 59.1
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 9.4e-164 580.9 475 59.2
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 2.7e-163 579.3 484 58.5
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 6.7e-162 574.7 472 59.5
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 6.7e-162 574.7 587 50.8
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 4.1e-159 565.5 474 59.7
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 1.5e-158 563.5 471 57.5
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 3.4e-158 562.4 480 56.2
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 1.1e-156 557.4 474 57.2
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 9.4e-156 554.3 474 57.6
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 9.4e-156 554.3 474 56.8
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 9.4e-156 554.3 474 57.6
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 3.6e-155 552.4 474 56.3
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 2.6e-153 546.2 485 55.1
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 7.7e-150 534.6 472 57.0
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 2.5e-148 529.6 501 50.5
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 4.0e-146 522.3 434 56.9
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 1.1e-145 520.8 479 51.4
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 2.9e-141 506.1 469 50.5
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 4.8e-136 488.8 464 53.4
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 3.1e-135 486.1 333 67.6
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 2.3e-122 443.4 329 63.2
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 4.6e-118 429.1 357 57.1
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 3.1e-114 416.4 302 66.2
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 1.6e-110 404.1 496 41.9
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 2.3e-109 400.2 356 54.8
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 7.1e-103 378.6 292 59.9
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 4.9e-96 355.9 487 41.5
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 1.9e-95 354.0 483 39.5
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 3.5e-86 323.2 277 59.2
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 2.3e-85 320.5 277 58.8
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 1.2e-81 308.1 476 37.2
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 9.9e-81 305.1 266 58.3
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 9.9e-81 305.1 219 61.2
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 1.3e-80 304.7 292 50.0
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 1.2e-73 281.6 261 55.2
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 3.0e-69 266.9 226 58.4
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 5.5e-63 246.1 201 58.7
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 8.2e-59 232.3 360 36.1
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 5.2e-37 159.8 102 72.5
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 1.5e-36 158.3 350 32.0
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 4.1e-34 150.2 85 82.4
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 1.8e-26 124.8 92 63.0
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 7.0e-26 122.9 76 72.4
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 8.3e-19 99.4 53 79.2
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 4.1e-18 97.1 53 79.2
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 1.2e-17 95.5 75 57.3
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.9e-17 93.2 53 73.6
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.9e-17 93.2 53 73.6
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 5.9e-17 93.2 112 43.8
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.3e-16 92.0 53 77.4
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 5.5e-15 86.7 81 51.9
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 3.6e-14 84.0 100 41.0
QL02p008273 Quercus lobata HOM05D006037 ORTHO05D007384 4.7e-14 83.6 40 92.5
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 3.0e-13 80.9 134 31.3
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 6.3e-11 73.2 75 49.3
PRCOL_00001454 Prasinoderma coloniale HOM05D020990 ORTHO05D028642 2.7e-09 67.8 247 24.7
CSS0043972 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 2.3e-08 64.7 53 56.6
QL02p008170 Quercus lobata HOM05D006037 ORTHO05D007384 1.9e-07 61.6 65 52.3
ECA247G1102 Erigeron canadensis HOM05D003337 ORTHO05D003808 3.3e-07 60.8 54 61.1
PRCOL_00006080 Prasinoderma coloniale HOM05D002042 ORTHO05D003928 2.1e-06 58.2 132 31.1


User provided reference genes

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