Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 2.5e-171 605.5 337 100.0
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 1.6e-130 469.9 341 77.7
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 6.6e-84 315.1 333 57.1
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 8.6e-84 314.7 331 62.8
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 2.8e-82 309.7 330 59.4
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 1.4e-78 297.4 331 52.6
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 3.5e-77 292.7 331 54.1
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 3.5e-77 292.7 332 60.8
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 7.8e-77 291.6 330 56.4
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 6.6e-76 288.5 325 50.8
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.5e-75 287.3 325 50.8
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 2.6e-72 276.6 330 48.2
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 1.3e-66 257.7 315 47.0
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 4.8e-66 255.8 343 50.4
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 3.8e-63 246.1 333 52.0
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.1e-59 234.6 314 51.0
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.5e-59 234.2 319 42.6
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 5.6e-59 232.3 328 47.0
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 1.3e-55 221.1 339 47.5
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.2e-55 220.3 316 50.6
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.8e-55 219.5 316 50.3
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 8.4e-55 218.4 279 48.0
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.9e-54 217.2 324 47.5
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 5.5e-54 215.7 324 41.0
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.1e-53 213.8 349 41.8
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.6e-53 212.6 323 46.7
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 6.0e-53 212.2 349 46.7
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 7.9e-53 211.8 349 46.7
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 1.3e-52 211.1 334 48.5
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.8e-52 210.7 349 46.1
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 5.1e-52 209.1 347 46.7
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 6.7e-52 208.8 320 43.8
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 1.1e-51 208.0 325 41.5
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.9e-51 207.2 334 39.5
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 2.5e-51 206.8 319 39.5
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 2.5e-51 206.8 325 38.8
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 9.6e-51 204.9 348 43.4
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.3e-50 204.5 324 50.3
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 2.1e-50 203.8 328 43.3
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.8e-50 203.4 319 39.2
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 6.3e-50 202.2 329 44.4
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 1.1e-49 201.4 323 47.1
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 2.4e-49 200.3 319 48.6
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 2.4e-49 200.3 323 46.1
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 3.1e-49 199.9 344 43.6
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 3.1e-49 199.9 319 46.7
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 6.9e-49 198.7 337 45.4
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 1.2e-48 198.0 327 48.6
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.0e-48 197.2 329 38.9
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 4.5e-48 196.1 323 49.2
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 5.9e-48 195.7 341 37.8
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 5.9e-48 195.7 327 43.7
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 3.8e-47 193.0 331 43.8
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 6.5e-47 192.2 324 50.0
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 8.4e-47 191.8 325 38.5
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 1.9e-46 190.7 324 44.1
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 3.2e-46 189.9 325 37.5
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 3.2e-46 189.9 324 44.1
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 7.2e-46 188.7 328 36.6
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 3.0e-44 183.3 327 39.8
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 3.9e-44 183.0 328 35.4
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 1.1e-43 181.4 318 40.9
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 4.3e-43 179.5 326 45.1
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 5.7e-43 179.1 321 40.8
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 2.2e-42 177.2 319 38.6
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 2.8e-42 176.8 337 42.7
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 3.7e-42 176.4 299 43.1
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 1.4e-41 174.5 345 42.6
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 9.0e-41 171.8 325 40.6
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 1.5e-40 171.0 206 51.0
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 5.9e-40 169.1 325 39.1
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.7e-39 167.5 337 43.3
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 3.8e-39 166.4 337 42.4
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 3.8e-39 166.4 335 34.9
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 1.1e-38 164.9 344 37.5
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 3.2e-38 163.3 193 48.2
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.2e-37 161.4 327 38.5
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 2.7e-37 160.2 315 42.2
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 3.6e-37 159.8 315 37.5
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 4.6e-37 159.5 327 40.7
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 6.1e-37 159.1 322 38.8
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 1.0e-36 158.3 325 36.0
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 2.3e-36 157.1 320 36.2
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 3.9e-36 156.4 329 42.9
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 3.9e-36 156.4 329 42.9
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 6.7e-36 155.6 332 41.6
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 8.8e-36 155.2 329 41.6
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 8.8e-36 155.2 329 41.6
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 1.1e-35 154.8 335 43.9
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 1.1e-35 154.8 327 41.6
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 3.3e-35 153.3 332 40.1
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 3.3e-35 153.3 329 35.3
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 5.7e-35 152.5 332 41.9
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 1.7e-34 151.0 329 41.6
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 1.7e-34 151.0 309 37.9
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 1.7e-34 151.0 312 36.5
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 2.2e-34 150.6 326 41.4
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 2.8e-34 150.2 332 41.3
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 8.2e-34 148.7 328 42.1
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 8.2e-34 148.7 300 35.7
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 1.4e-33 147.9 329 41.0
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 2.4e-33 147.1 325 39.4
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 9.1e-33 145.2 288 37.2
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.5e-32 144.4 317 36.9
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.3e-31 141.4 315 38.4
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 1.3e-31 141.4 330 40.9
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 5.0e-31 139.4 324 39.2
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 5.0e-31 139.4 319 38.6
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 1.9e-30 137.5 331 31.7
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.5e-30 137.1 319 41.4
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 7.2e-30 135.6 320 38.1
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 9.4e-30 135.2 323 38.7
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 9.4e-30 135.2 323 38.7
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 9.4e-30 135.2 323 38.7
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 1.2e-29 134.8 318 36.5
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.2e-29 134.8 308 43.2
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 6.1e-29 132.5 330 33.9
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 2.3e-28 130.6 158 48.7
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 5.7e-27 125.9 317 38.8
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 9.7e-27 125.2 311 38.9
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 9.7e-27 125.2 313 36.7
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 8.2e-26 122.1 262 37.8
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 1.8e-25 120.9 301 39.5
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 9.1e-25 118.6 325 34.2
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.2e-24 118.2 319 32.6
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 1.6e-24 117.9 315 33.0
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 2.0e-24 117.5 277 40.8
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 2.6e-24 117.1 313 35.5
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 1.3e-23 114.8 327 30.0
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 1.7e-23 114.4 199 40.7
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 3.8e-23 113.2 265 45.3
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 1.5e-22 111.3 269 35.3
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 5.5e-22 109.4 302 31.5
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 9.4e-22 108.6 314 29.9
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 1.2e-21 108.2 202 39.6
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.1e-21 107.5 313 31.0
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 2.7e-21 107.1 311 32.5
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 2.3e-20 104.0 266 42.5
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 4.0e-20 103.2 311 36.3
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 6.7e-20 102.4 310 38.1
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 2.0e-19 100.9 302 30.1
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 3.3e-19 100.1 305 32.8
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 5.7e-19 99.4 275 39.3
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 1.3e-18 98.2 309 31.4
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 4.8e-18 96.3 268 38.1
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 6.3e-18 95.9 292 35.6
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 3.5e-16 90.1 251 38.6
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 9.4e-14 82.0 192 36.5
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 9.4e-14 82.0 282 39.7
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 4.7e-13 79.7 285 31.6
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 6.8e-12 75.9 321 27.1
Lalb_Chr06g0166021 Lupinus albus HOM05D004679 ORTHO05D005524 3.4e-11 73.6 308 31.5
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 7.0e-09 65.9 184 32.1
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 7.7e-08 62.4 161 34.8
ATR1125G023 Amborella trichopoda HOM05D004679 ORTHO05D005524 8.5e-07 58.9 176 29.5


User provided reference genes

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