Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G102600 Manihot esculenta HOM05D008112 ORTHO05D010225 3.2e-53 211.5 105 100.0
Manes.06G068400 Manihot esculenta HOM05D008112 ORTHO05D010225 1.1e-42 176.4 105 82.9
Potri.010G124900 Populus trichocarpa HOM05D008112 ORTHO05D010225 4.4e-26 121.3 110 64.5
Potri.008G120800 Populus trichocarpa HOM05D008112 ORTHO05D010225 1.2e-23 113.2 110 60.0
Thecc.02G230800 Theobroma cacao HOM05D008112 ORTHO05D010225 6.5e-22 107.5 100 57.0
Cfa018594 Carpinus fangiana HOM05D008112 ORTHO05D010225 1.1e-21 106.7 108 54.6
TAR622G0251 Trochodendron aralioides HOM05D008112 ORTHO05D010225 5.5e-21 104.4 107 51.4
TAR371G0405 Trochodendron aralioides HOM05D008112 ORTHO05D010225 3.6e-20 101.7 104 51.9
Gohir.D02G169900 Gossypium hirsutum HOM05D008112 ORTHO05D010225 1.8e-19 99.4 105 52.4
Gorai.005G190400 Gossypium raimondii HOM05D008112 ORTHO05D010225 1.8e-19 99.4 105 50.5
Haze_17483 Corylus avellana HOM05D008112 ORTHO05D010225 2.3e-19 99.0 98 56.1
Nn3g17844 Nelumbo nucifera HOM05D008112 ORTHO05D010225 5.2e-19 97.8 110 49.1
Gohir.A03G146800 Gossypium hirsutum HOM05D008112 ORTHO05D010225 2.6e-18 95.5 105 49.5
CiPaw.16G065000 Carya illinoinensis HOM05D008112 ORTHO05D010225 9.8e-18 93.6 108 54.6
Prupe.1G311100 Prunus persica HOM05D008112 ORTHO05D010225 1.3e-17 93.2 96 54.2
CiPaw.15G085200 Carya illinoinensis HOM05D008112 ORTHO05D010225 1.7e-17 92.8 113 49.6
FvH4_4g27360 Fragaria vesca HOM05D008112 ORTHO05D010225 2.2e-17 92.4 111 49.5
FAN12G3697 Fragaria x ananassa HOM05D008112 ORTHO05D010225 2.2e-17 92.4 111 49.5
FAN12G3827 Fragaria x ananassa HOM05D008112 ORTHO05D010225 2.2e-17 92.4 111 49.5
TAR629G1885 Trochodendron aralioides HOM05D008112 ORTHO05D010225 1.8e-16 89.4 76 53.9
Hma1.2p1_0061F.1_g033900 Hydrangea macrophylla HOM05D008112 ORTHO05D010225 5.4e-16 87.8 105 46.7
RcHm_v2.0_Chr4g0435171 Rosa chinensis HOM05D008112 ORTHO05D010225 5.4e-16 87.8 117 46.2
FAN07G1645 Fragaria x ananassa HOM05D008112 ORTHO05D010225 7.0e-16 87.4 116 45.7
Cpa.g.sc1.41 Carica papaya HOM05D008112 ORTHO05D010225 9.1e-16 87.0 105 51.4
Glyma.20G115800 Glycine max HOM05D008112 ORTHO05D010225 9.1e-16 87.0 92 51.1
Glyma.10G274200 Glycine max HOM05D008112 ORTHO05D010225 1.6e-15 86.3 92 54.3
FAN22G0823 Fragaria x ananassa HOM05D008112 ORTHO05D010225 2.0e-15 85.9 116 46.6
Ciclev10017355m.g Citrus clementina HOM05D008112 ORTHO05D010225 5.9e-15 84.3 82 51.2
Sabra10G0094800 Salix brachista HOM05D008112 ORTHO05D010225 5.9e-15 84.3 91 57.1
Atru.chr11.70 Acer truncatum HOM05D008112 ORTHO05D010225 1.7e-14 82.8 111 43.2
CSS0024667 Camellia sinensis var. sinensis HOM05D008112 ORTHO05D010225 5.0e-14 81.3 107 43.0
Glyma.08G262400 Glycine max HOM05D008112 ORTHO05D010225 1.1e-13 80.1 107 44.9
TPR.G1513 Trifolium pratense HOM05D008112 ORTHO05D010225 3.2e-13 78.6 104 44.2
Medtr1g110820 Medicago truncatula HOM05D008112 ORTHO05D010225 5.5e-13 77.8 105 42.9
Phvul.007G027300 Phaseolus vulgaris HOM05D008112 ORTHO05D010225 9.5e-13 77.0 88 46.6
Lsat_1_v5_gn_4_17580 Lactuca sativa HOM05D008112 ORTHO05D010225 3.6e-12 75.1 107 47.7
Rhsim12G0084800 Rhododendron simsii HOM05D008112 ORTHO05D010225 6.1e-12 74.3 97 43.3
MELO3C012251.2 Cucumis melo HOM05D008112 ORTHO05D010225 8.0e-12 73.9 87 41.4
Lj2g0015777 Lotus japonicus HOM05D008112 ORTHO05D010225 1.8e-11 72.8 100 42.0
TPR.G39819 Trifolium pratense HOM05D008112 ORTHO05D010225 3.0e-11 72.0 98 42.9
Phvul.003G035700 Phaseolus vulgaris HOM05D008112 ORTHO05D010225 5.2e-11 71.2 94 44.7
DCAR_023658 Daucus carota HOM05D008112 ORTHO05D010225 2.6e-10 68.9 117 40.2
Lj5g0021475 Lotus japonicus HOM05D008112 ORTHO05D010225 3.4e-10 68.6 108 43.5
Lalb_Chr02g0145981 Lupinus albus HOM05D008112 ORTHO05D010225 4.4e-10 68.2 110 40.0
ClCG05G022690 Citrullus lanatus HOM05D008112 ORTHO05D010225 7.5e-10 67.4 91 33.0
Lalb_Chr10g0100011 Lupinus albus HOM05D008112 ORTHO05D010225 7.5e-10 67.4 106 43.4
CsaV3_5G034340 Cucumis sativus L. HOM05D008112 ORTHO05D010225 9.8e-10 67.0 80 40.0
Lalb_Chr06g0166071 Lupinus albus HOM05D008112 ORTHO05D010225 1.7e-09 66.2 92 44.6
Dinv34826 Davidia involucrata HOM05D008112 ORTHO05D010225 2.2e-09 65.9 106 40.6
Dinv31638 Davidia involucrata HOM05D008112 ORTHO05D010225 1.1e-08 63.5 73 49.3
Eucgr.B03015 Eucalyptus grandis HOM05D008112 ORTHO05D010225 3.1e-08 62.0 96 37.5
ClCG08G005370 Citrullus lanatus HOM05D038709 ORTHO05D010225 9.2e-08 60.5 85 47.1
QL01p042495 Quercus lobata HOM05D008112 ORTHO05D010225 1.6e-07 59.7 72 48.6
Ah.03g137650 Amaranthus hybridus HOM05D008112 ORTHO05D010225 3.5e-07 58.5 107 38.3
Lalb_Chr17g0342121 Lupinus albus HOM05D008112 ORTHO05D010225 3.5e-07 58.5 97 39.2
Aa31LG2G6430 Aethionema arabicum HOM05D010264 ORTHO05D012423 4.5e-07 58.2 75 42.7
SalBow8G4149 Salvia bowleyana HOM05D008112 ORTHO05D010225 4.5e-07 58.2 85 38.8
ECA246G3993 Erigeron canadensis HOM05D008112 ORTHO05D010225 7.7e-07 57.4 93 39.8
SGA_v2.0_scaffold124G33520 Striga asiatica HOM05D008112 ORTHO05D010225 7.7e-07 57.4 107 39.3
Aqoxy3G00299 Aquilegia oxysepala HOM05D008112 ORTHO05D010225 1.0e-06 57.0 84 36.9
MSTRG.840 Avicennia marina HOM05D008112 ORTHO05D010225 1.7e-06 56.2 109 37.6
Sed0024639 Sechium edule HOM05D008112 ORTHO05D010225 1.7e-06 56.2 110 35.5
Aa31LG7G9070 Aethionema arabicum HOM05D010181 ORTHO05D012280 2.3e-06 55.8 108 32.4
AT1G25425 Arabidopsis thaliana HOM05D010181 ORTHO05D012280 8.6e-06 53.9 108 36.1
AT3G25905 Arabidopsis thaliana HOM05D010264 ORTHO05D012423 8.6e-06 53.9 94 36.2


User provided reference genes

Program Settings