Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 2.7e-49 198.4 99 100.0
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 7.5e-36 153.7 83 89.2
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 2.3e-32 142.1 90 75.6
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 7.3e-31 137.1 86 70.9
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 1.2e-30 136.3 94 69.1
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 2.6e-28 128.6 88 67.0
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 1.3e-27 126.3 93 63.4
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 6.4e-27 124.0 81 65.4
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 1.4e-26 122.9 80 68.8
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 3.2e-26 121.7 85 67.1
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 5.4e-26 120.9 88 62.5
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 5.4e-26 120.9 91 64.8
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 9.2e-26 120.2 77 68.8
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 1.2e-25 119.8 88 61.4
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 2.0e-25 119.0 89 64.0
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 4.6e-25 117.9 80 66.2
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 4.6e-25 117.9 74 70.3
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 5.9e-25 117.5 73 68.5
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 5.9e-25 117.5 73 74.0
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 5.9e-25 117.5 87 64.4
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 7.8e-25 117.1 71 74.6
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 1.0e-24 116.7 75 66.7
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 1.3e-24 116.3 80 68.8
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 1.3e-24 116.3 88 64.8
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 1.7e-24 115.9 88 58.0
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 2.3e-24 115.5 75 64.0
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 2.3e-24 115.5 75 64.0
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 2.3e-24 115.5 80 67.5
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 3.0e-24 115.2 85 60.0
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 3.0e-24 115.2 85 60.0
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 3.9e-24 114.8 77 63.6
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 3.9e-24 114.8 85 62.4
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 5.0e-24 114.4 78 67.9
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 6.6e-24 114.0 80 67.5
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 8.6e-24 113.6 75 64.0
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 8.6e-24 113.6 96 55.2
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 8.6e-24 113.6 73 71.2
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 1.1e-23 113.2 77 63.6
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 1.1e-23 113.2 77 68.8
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 1.5e-23 112.8 69 71.0
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 1.9e-23 112.5 80 63.8
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.3e-23 111.7 94 56.4
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 3.3e-23 111.7 94 56.4
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 4.3e-23 111.3 77 61.0
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 4.3e-23 111.3 72 72.2
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.3e-23 111.3 88 61.4
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 5.6e-23 110.9 81 58.0
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 7.3e-23 110.5 90 57.8
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 9.5e-23 110.2 74 68.9
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 1.6e-22 109.4 89 57.3
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 2.1e-22 109.0 68 75.0
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 2.1e-22 109.0 85 55.3
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 2.8e-22 108.6 81 65.4
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.8e-22 108.6 88 60.2
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 3.6e-22 108.2 69 65.2
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 3.6e-22 108.2 68 76.5
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 4.7e-22 107.8 71 66.2
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 6.2e-22 107.5 82 59.8
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 8.0e-22 107.1 83 61.4
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.1e-21 106.7 107 49.5
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.1e-21 106.7 107 49.5
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 1.4e-21 106.3 69 65.2
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.3e-21 105.5 106 49.1
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 6.8e-21 104.0 75 64.0
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.8e-21 104.0 95 55.8
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.8e-21 104.0 81 59.3
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 8.9e-21 103.6 73 64.4
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 2.6e-20 102.1 73 61.6
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 3.4e-20 101.7 82 53.7
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 4.4e-20 101.3 85 54.1
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 4.4e-20 101.3 87 51.7
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 5.8e-20 100.9 77 58.4
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 5.8e-20 100.9 98 51.0
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 7.5e-20 100.5 97 50.5
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 7.5e-20 100.5 93 50.5
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 7.5e-20 100.5 83 54.2
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 1.3e-19 99.8 73 61.6
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 1.3e-19 99.8 93 53.8
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 1.3e-19 99.8 83 57.8
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 1.7e-19 99.4 70 61.4
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 2.2e-19 99.0 86 51.2
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 2.2e-19 99.0 83 54.2
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 2.9e-19 98.6 81 54.3
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 2.9e-19 98.6 86 51.2
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.9e-19 98.6 80 62.5
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 3.7e-19 98.2 77 59.7
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 3.7e-19 98.2 70 62.9
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 3.7e-19 98.2 86 53.5
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 3.7e-19 98.2 88 52.3
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 4.9e-19 97.8 68 66.2
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 4.9e-19 97.8 80 53.8
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 4.9e-19 97.8 86 54.7
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 4.9e-19 97.8 89 50.6
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 6.4e-19 97.4 69 65.2
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 8.3e-19 97.1 69 65.2
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.1e-18 96.7 88 48.9
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.1e-18 96.7 88 48.9
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.1e-18 96.7 88 48.9
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 1.4e-18 96.3 85 51.8
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 1.9e-18 95.9 73 63.0
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 3.2e-18 95.1 70 64.3
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 3.2e-18 95.1 73 56.2
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 3.2e-18 95.1 71 62.0
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 3.2e-18 95.1 72 61.1
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 3.2e-18 95.1 68 67.6
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 4.1e-18 94.7 69 63.8
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 7.0e-18 94.0 68 61.8
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.6e-17 92.8 75 56.0
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 4.6e-17 91.3 85 52.9
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 1.0e-16 90.1 72 56.9
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 1.3e-16 89.7 72 58.3
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 5.0e-16 87.8 69 58.0
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 3.3e-15 85.1 68 54.4
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 3.3e-15 85.1 68 54.4
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 3.6e-14 81.6 53 73.6
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 1.1e-13 80.1 56 64.3
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 1.4e-13 79.7 68 51.5
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 2.3e-13 79.0 78 46.2
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 8.9e-13 77.0 70 48.6
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 6.4e-11 70.9 57 56.1
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 8.3e-11 70.5 72 45.8
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 1.1e-10 70.1 45 68.9
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 9.2e-10 67.0 47 61.7
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 1.6e-09 66.2 62 50.0
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 1.6e-09 66.2 83 43.4
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 7.8e-09 63.9 44 61.4
PGSC0003DMG400010902 Solanum tuberosum HOM05D006108 ORTHO05D007605 3.9e-08 61.6 39 71.8
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 2.5e-07 58.9 53 52.8
MELO3C011555.2 Cucumis melo HOM05D006108 ORTHO05D007605 9.5e-07 57.0 40 60.0
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.2e-06 56.6 56 53.6


User provided reference genes

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