Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 1.9e-59 232.3 115 100.0
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 3.4e-32 141.7 123 69.9
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.6e-26 122.9 116 62.1
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 2.6e-24 115.5 129 58.1
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 5.9e-24 114.4 119 57.1
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 2.9e-23 112.1 114 57.0
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 1.6e-21 106.3 115 56.5
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 1.6e-21 106.3 115 55.7
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 2.7e-21 105.5 120 55.0
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 3.5e-21 105.1 125 55.2
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.0e-20 103.6 117 53.8
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.3e-20 103.2 122 54.1
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 1.8e-20 102.8 121 53.7
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 3.0e-20 102.1 117 55.6
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.9e-20 101.7 122 51.6
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 3.9e-20 101.7 115 57.4
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 3.9e-20 101.7 117 52.1
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 5.1e-20 101.3 115 53.9
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 6.7e-20 100.9 121 52.9
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 8.7e-20 100.5 128 53.9
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 1.1e-19 100.1 113 54.0
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 1.5e-19 99.8 113 51.3
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 2.2e-18 95.9 119 50.4
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 8.2e-18 94.0 122 52.5
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 8.2e-18 94.0 113 48.7
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 8.2e-18 94.0 114 55.3
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 3.1e-17 92.0 118 50.0
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 3.1e-17 92.0 130 49.2
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 4.1e-17 91.7 117 54.7
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 4.1e-17 91.7 116 55.2
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 6.9e-17 90.9 133 45.9
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 9.0e-17 90.5 125 48.8
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 9.0e-17 90.5 125 48.8
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.2e-16 90.1 125 48.0
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 2.6e-16 89.0 114 48.2
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 4.5e-16 88.2 117 53.0
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 5.9e-16 87.8 128 48.4
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 7.7e-16 87.4 109 54.1
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 1.0e-15 87.0 112 50.0
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 1.0e-15 87.0 105 51.4
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 5.0e-15 84.7 119 46.2
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 6.5e-15 84.3 117 46.2
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 6.5e-15 84.3 116 50.9
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.1e-14 83.6 121 47.1
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 1.4e-14 83.2 106 48.1
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 1.4e-14 83.2 123 43.9
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 2.5e-14 82.4 118 45.8
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 2.5e-14 82.4 118 45.8
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 4.2e-14 81.6 118 46.6
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 4.2e-14 81.6 113 46.0
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 5.5e-14 81.3 125 45.6
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 9.4e-14 80.5 119 45.4
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 9.4e-14 80.5 105 46.7
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 9.4e-14 80.5 113 48.7
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.2e-13 80.1 127 42.5
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 1.6e-13 79.7 123 45.5
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 2.1e-13 79.3 118 44.9
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 3.6e-13 78.6 108 50.9
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 4.6e-13 78.2 113 49.6
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 6.1e-13 77.8 104 48.1
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 1.0e-12 77.0 114 44.7
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 1.0e-12 77.0 121 41.3
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.4e-12 76.6 105 47.6
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 1.4e-12 76.6 107 42.1
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 1.8e-12 76.3 116 46.6
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 1.8e-12 76.3 116 46.6
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.8e-12 76.3 105 47.6
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 1.8e-12 76.3 121 47.1
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 2.3e-12 75.9 119 42.0
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 2.3e-12 75.9 121 39.7
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 3.0e-12 75.5 87 49.4
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 3.0e-12 75.5 106 46.2
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 3.9e-12 75.1 115 48.7
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 3.9e-12 75.1 116 42.2
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 5.1e-12 74.7 115 43.5
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 5.1e-12 74.7 80 48.8
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 5.1e-12 74.7 124 44.4
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 6.7e-12 74.3 106 45.3
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 6.7e-12 74.3 105 44.8
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 6.7e-12 74.3 113 45.1
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 8.8e-12 73.9 107 45.8
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 8.8e-12 73.9 119 46.2
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 1.1e-11 73.6 60 66.7
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 1.1e-11 73.6 117 42.7
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.1e-11 73.6 116 44.0
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.5e-11 73.2 103 46.6
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.3e-11 72.0 120 47.5
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 4.3e-11 71.6 119 42.0
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 5.7e-11 71.2 120 47.5
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 7.4e-11 70.9 120 45.8
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 9.7e-11 70.5 119 41.2
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 1.3e-10 70.1 111 42.3
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 1.7e-10 69.7 122 45.1
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 2.2e-10 69.3 119 42.9
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 2.8e-10 68.9 127 40.2
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.7e-10 68.6 104 46.2
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 3.7e-10 68.6 120 46.7
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 3.7e-10 68.6 111 45.0
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 8.2e-10 67.4 119 38.7
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 8.2e-10 67.4 124 38.7
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 8.2e-10 67.4 117 40.2
MBI16_g06255_MAGBIO Magnolia biondii HOM05D005816 ORTHO05D006915 8.2e-10 67.4 114 44.7
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 8.2e-10 67.4 105 41.0
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 1.1e-09 67.0 112 43.8
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.4e-09 66.6 110 43.6
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 2.4e-09 65.9 74 50.0
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 2.4e-09 65.9 68 55.9
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 2.4e-09 65.9 105 40.0
Lj5g0018872 Lotus japonicus HOM05D005816 ORTHO05D006915 3.1e-09 65.5 106 48.1
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 4.1e-09 65.1 115 45.2
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 6.9e-09 64.3 107 42.1
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 9.1e-09 63.9 106 44.3
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 9.1e-09 63.9 69 47.8
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 9.1e-09 63.9 114 39.5
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 9.1e-09 63.9 119 41.2
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 1.2e-08 63.5 108 40.7
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 1.5e-08 63.2 104 45.2
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 1.5e-08 63.2 72 51.4
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 2.0e-08 62.8 103 40.8
QL10p023002 Quercus lobata HOM05D005816 ORTHO05D006915 2.6e-08 62.4 117 35.9
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 3.4e-08 62.0 113 43.4
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 3.4e-08 62.0 113 37.2
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 4.5e-08 61.6 89 46.1
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 5.9e-08 61.2 59 52.5
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 1.3e-07 60.1 115 41.7
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 2.2e-07 59.3 109 43.1
SGA_v2.0_scaffold59G20629 Striga asiatica HOM05D005816 ORTHO05D006915 2.2e-07 59.3 72 47.2
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 2.9e-07 58.9 79 43.0
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 1.9e-06 56.2 106 41.5
ATR0681G007 Amborella trichopoda HOM05D005816 ORTHO05D006915 2.5e-06 55.8 40 65.0
CiPaw.05G127200 Carya illinoinensis HOM05D007541 ORTHO05D009404 5.5e-06 54.7 68 48.5
Nn3g17389 Nelumbo nucifera HOM05D007541 ORTHO05D009404 5.5e-06 54.7 103 39.8
Sc04g0003730 Simmondsia chinensis HOM05D005816 ORTHO05D006915 9.4e-06 53.9 120 37.5


User provided reference genes

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