Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G093100 Manihot esculenta HOM05D018804 ORTHO05D014734 5.8e-72 274.2 150 100.0
Potri.008G113800 Populus trichocarpa HOM05D018804 ORTHO05D013371 5.1e-28 128.3 153 52.9
Sabra10G0103600 Salix brachista HOM05D018804 ORTHO05D013371 2.1e-26 122.9 140 54.3
Sabra08G0086100 Salix brachista HOM05D018804 ORTHO05D013371 3.7e-26 122.1 153 51.6
Potri.010G134800 Populus trichocarpa HOM05D018804 ORTHO05D013371 5.3e-25 118.2 153 50.3
Thecc.02G317900 Theobroma cacao HOM05D018013 ORTHO05D013371 2.8e-10 69.3 153 36.6
Atru.chr11.1516 Acer truncatum HOM05D018013 ORTHO05D013371 1.1e-09 67.4 156 36.5
Nitab4.5_0005310g0050 Nicotiana tabacum HOM05D011353 ORTHO05D014734 9.1e-09 64.3 125 42.4
Oeu024138.1 Olea europaea HOM05D011353 ORTHO05D009956 1.5e-08 63.5 143 41.3
Oeu054579.1 Olea europaea HOM05D011353 ORTHO05D009956 2.0e-08 63.2 152 41.4
Gohir.A13G093400 Gossypium hirsutum HOM05D018013 ORTHO05D013371 2.6e-08 62.8 151 40.4
Cpa.g.sc53.8 Carica papaya HOM05D017299 ORTHO05D013371 5.9e-08 61.6 154 37.7
Gohir.D12G187700 Gossypium hirsutum HOM05D008563 ORTHO05D009802 7.7e-08 61.2 82 48.8
Gorai.008G201100 Gossypium raimondii HOM05D008563 ORTHO05D009802 7.7e-08 61.2 82 48.8
Phvul.008G023501 Phaseolus vulgaris HOM05D008889 ORTHO05D009956 7.7e-08 61.2 96 45.8
COL.COLO4_27749 Corchorus olitorius HOM05D018013 ORTHO05D013371 1.0e-07 60.8 147 36.1
FAN22G0750 Fragaria x ananassa HOM05D014692 ORTHO05D014734 1.0e-07 60.8 84 50.0
FvH4_4g28720 Fragaria vesca HOM05D014692 ORTHO05D014734 1.3e-07 60.5 84 48.8
FAN12G1660 Fragaria x ananassa HOM05D014692 ORTHO05D014734 1.3e-07 60.5 84 48.8
FAN07G0328 Fragaria x ananassa HOM05D014692 ORTHO05D014734 1.7e-07 60.1 84 48.8
FAN17G2419 Fragaria x ananassa HOM05D014692 ORTHO05D014734 1.7e-07 60.1 141 36.9
Gorai.013G103000 Gossypium raimondii HOM05D018013 ORTHO05D013371 1.7e-07 60.1 151 39.7
MD17G1069000 Malus domestica HOM05D008889 ORTHO05D009956 1.7e-07 60.1 125 38.4
Cc11_g11230 Coffea canephora HOM05D011353 ORTHO05D009956 2.2e-07 59.7 157 37.6
FAN02G0304 Fragaria x ananassa HOM05D008889 ORTHO05D009956 2.2e-07 59.7 129 37.2
RcHm_v2.0_Chr2g0164181 Rosa chinensis HOM05D008889 ORTHO05D009956 2.2e-07 59.7 122 39.3
MSTRG.13480 Avicennia marina HOM05D026131 ORTHO05D031628 5.0e-07 58.5 123 43.9
FAN05G4365 Fragaria x ananassa HOM05D008889 ORTHO05D009956 5.0e-07 58.5 129 36.4
QL03p047692 Quercus lobata HOM05D017299 ORTHO05D013371 5.0e-07 58.5 162 36.4
TWI60G1323 Tripterygium wilfordii HOM05D008889 ORTHO05D009956 5.0e-07 58.5 121 38.8
FvH4_6g45950 Fragaria vesca HOM05D008889 ORTHO05D009956 6.5e-07 58.2 129 36.4
FAN14G5446 Fragaria x ananassa HOM05D008889 ORTHO05D009956 6.5e-07 58.2 129 36.4
Gohir.D13G089850 Gossypium hirsutum HOM05D018013 ORTHO05D013371 6.5e-07 58.2 137 40.1
Nn3g17602 Nelumbo nucifera HOM05D008563 ORTHO05D009802 6.5e-07 58.2 154 35.7
TPR.G2004 Trifolium pratense HOM05D008563 ORTHO05D009802 8.5e-07 57.8 167 31.7
Prupe.3G245600 Prunus persica HOM05D008889 ORTHO05D009956 1.1e-06 57.4 81 46.9
CiPaw.06G096300 Carya illinoinensis HOM05D017299 ORTHO05D013371 1.9e-06 56.6 143 37.1
Duzib268G0584 Durio zibethinus HOM05D018013 ORTHO05D013371 1.9e-06 56.6 120 38.3
Sabra17G0089900 Salix brachista HOM05D008889 ORTHO05D009956 1.9e-06 56.6 82 45.1
Aqoxy3G03789 Aquilegia oxysepala HOM05D018804 ORTHO05D009802 3.2e-06 55.8 160 38.8
CSS0034251 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 4.2e-06 55.5 82 54.9
CSS0042453 Camellia sinensis var. sinensis HOM05D008563 ORTHO05D009802 4.2e-06 55.5 82 54.9
PSO478G2273 Papaver somniferum HOM05D042328 ORTHO05D009956 4.2e-06 55.5 136 36.8
Thecc.03G112200 Theobroma cacao HOM05D008563 ORTHO05D009802 4.2e-06 55.5 88 53.4
Glyma.08G254600 Glycine max HOM05D008889 ORTHO05D009956 5.5e-06 55.1 126 34.1
Lj2g0023718 Lotus japonicus HOM05D018202 ORTHO05D020778 5.5e-06 55.1 83 44.6
Sopen05g006040 Solanum pennellii HOM05D011353 ORTHO05D009802 5.5e-06 55.1 135 38.5
CAN.G184.15 Capsicum annuum HOM05D011353 ORTHO05D009802 7.2e-06 54.7 134 39.6
Ciclev10013380m.g Citrus clementina HOM05D008889 ORTHO05D009956 7.2e-06 54.7 68 50.0
Nitab4.5_0000149g0140 Nicotiana tabacum HOM05D011353 ORTHO05D009802 7.2e-06 54.7 117 45.3
CiPaw.05G119800 Carya illinoinensis HOM05D017299 ORTHO05D013371 9.4e-06 54.3 159 36.5
FAN09G2052 Fragaria x ananassa HOM05D008889 ORTHO05D009956 9.4e-06 54.3 129 34.9
TPR.G3280 Trifolium pratense HOM05D008889 ORTHO05D009956 9.4e-06 54.3 96 40.6


User provided reference genes

Program Settings