Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G091100 Manihot esculenta HOM05D007623 ORTHO05D009641 1.4e-172 610.9 311 100.0
Sabra10G0105800 Salix brachista HOM05D007623 ORTHO05D009641 1.2e-107 395.2 311 65.9
Cfa008839 Carpinus fangiana HOM05D007623 ORTHO05D009641 3.0e-101 374.0 308 63.3
Haze_11851 Corylus avellana HOM05D007623 ORTHO05D009641 2.5e-100 370.9 308 63.0
CiPaw.06G095500 Carya illinoinensis HOM05D007623 ORTHO05D009641 5.6e-100 369.8 310 61.3
MD16G1054700 Malus domestica HOM05D007623 ORTHO05D009641 7.1e-95 352.8 301 62.8
Thecc.02G321100 Theobroma cacao HOM05D007623 ORTHO05D009641 7.1e-95 352.8 309 62.8
GSVIVG01010112001 Vitis vinifera HOM05D007623 ORTHO05D009641 5.1e-93 346.7 302 62.9
RcHm_v2.0_Chr4g0437181 Rosa chinensis HOM05D007623 ORTHO05D009641 1.6e-91 341.7 311 60.5
Prupe.2G062100 Prunus persica HOM05D007623 ORTHO05D009641 2.1e-91 341.3 309 61.2
COL.COLO4_27779 Corchorus olitorius HOM05D007623 ORTHO05D009641 6.2e-91 339.7 280 64.3
FvH4_4g29120 Fragaria vesca HOM05D007623 ORTHO05D009641 1.1e-90 339.0 307 59.6
FAN12G1349 Fragaria x ananassa HOM05D007623 ORTHO05D009641 4.0e-90 337.0 306 59.8
Dinv34009 Davidia involucrata HOM05D007623 ORTHO05D009641 9.0e-90 335.9 306 58.5
FAN17G1802 Fragaria x ananassa HOM05D007623 ORTHO05D009641 1.5e-89 335.1 310 58.1
Atru.chr11.1545 Acer truncatum HOM05D007623 ORTHO05D009641 2.0e-89 334.7 318 57.2
FAN22G0497 Fragaria x ananassa HOM05D007623 ORTHO05D009641 2.6e-89 334.3 307 58.6
Gorai.005G147900 Gossypium raimondii HOM05D007623 ORTHO05D009641 2.6e-89 334.3 303 60.4
Gohir.A03G106900 Gossypium hirsutum HOM05D007623 ORTHO05D009641 7.6e-89 332.8 303 60.1
Sed0026487 Sechium edule HOM05D007623 ORTHO05D009641 2.9e-88 330.9 310 55.2
Actinidia24041 Actinidia chinensis HOM05D007623 ORTHO05D009641 1.5e-84 318.5 308 57.5
MELO3C026661.2 Cucumis melo HOM05D007623 ORTHO05D009641 9.6e-84 315.8 310 53.9
ClCG05G023480 Citrullus lanatus HOM05D007623 ORTHO05D009641 1.3e-83 315.5 296 56.8
CsaV3_3G030580 Cucumis sativus L. HOM05D007623 ORTHO05D009641 1.6e-83 315.1 305 54.1
CANSAT64G0130 Cannabis sativa HOM05D007623 ORTHO05D009641 1.8e-82 311.6 288 59.0
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 2.4e-82 311.2 293 58.0
CSS0048304 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 9.9e-81 305.8 272 59.6
Actinidia31923 Actinidia chinensis HOM05D007623 ORTHO05D009641 1.9e-79 301.6 308 54.5
CSS0034887 Camellia sinensis var. sinensis HOM05D007623 ORTHO05D009641 7.1e-79 299.7 308 54.5
vmacro01293 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 3.0e-77 294.3 307 55.0
SHI04831 Sapria himalayana HOM05D007623 ORTHO05D009641 3.3e-76 290.8 255 58.8
Aqoxy1G01216 Aquilegia oxysepala HOM05D007623 ORTHO05D009641 5.3e-74 283.5 294 51.0
Hund25149 Selenicereus undatus HOM05D007623 ORTHO05D009641 5.8e-73 280.0 319 48.6
HanXRQChr08g0215011 Helianthus annuus HOM05D007623 ORTHO05D009641 3.8e-72 277.3 307 50.5
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 6.5e-72 276.6 209 67.9
Lsat_1_v5_gn_6_31920 Lactuca sativa HOM05D007623 ORTHO05D009641 1.2e-70 272.3 295 50.8
PGSC0003DMG400019642 Solanum tuberosum HOM05D007623 ORTHO05D009641 6.0e-70 270.0 230 57.8
DCAR_023738 Daucus carota HOM05D007623 ORTHO05D009641 1.8e-69 268.5 261 55.6
Nn1g03057 Nelumbo nucifera HOM05D007623 ORTHO05D009641 1.8e-69 268.5 326 47.2
AL1G25410 Arabidopsis lyrata HOM05D007623 ORTHO05D009641 6.7e-69 266.5 290 49.0
Sopen00g002400 Solanum pennellii HOM05D007623 ORTHO05D009641 1.1e-68 265.8 234 56.0
Aa31LG7G1940 Aethionema arabicum HOM05D007623 ORTHO05D009641 6.3e-67 260.0 282 46.5
ECA233G1899 Erigeron canadensis HOM05D000630 ORTHO05D001413 5.9e-65 253.4 239 55.6
EL10Ac6g14659 Beta vulgaris HOM05D007623 ORTHO05D009641 1.5e-60 238.8 262 49.6
Rhsim12G0070700 Rhododendron simsii HOM05D007623 ORTHO05D009641 2.0e-60 238.4 270 49.6
Thhalv10009738m.g Eutrema salsugineum HOM05D007623 ORTHO05D009641 5.7e-60 236.9 294 45.2
THA.LOC104805220 Tarenaya hassleriana HOM05D007623 ORTHO05D009641 6.3e-59 233.4 278 45.3
Sp1g12290 Schrenkiella parvula HOM05D007623 ORTHO05D009641 3.4e-57 227.6 270 45.9
BcaB02g06459 Brassica carinata HOM05D007623 ORTHO05D009641 5.9e-57 226.9 271 46.9
Oeu019601.2 Olea europaea HOM05D007623 ORTHO05D009641 1.7e-56 225.3 201 55.7
Carub.0001s1335 Capsella rubella HOM05D007623 ORTHO05D009641 2.9e-56 224.6 285 44.9
AUR62007860 Chenopodium quinoa HOM05D007623 ORTHO05D009641 9.4e-55 219.5 252 47.6
Cc11_g11460 Coffea canephora HOM05D007623 ORTHO05D009641 1.2e-54 219.2 268 48.1
AUR62003048 Chenopodium quinoa HOM05D007623 ORTHO05D009641 1.0e-53 216.1 259 46.7
BcaC05g25269 Brassica carinata HOM05D007623 ORTHO05D009641 2.3e-53 214.9 283 45.6
MD13G1055600 Malus domestica HOM05D007623 ORTHO05D009641 5.1e-53 213.8 153 71.9
Sc11g0002680 Simmondsia chinensis HOM05D007623 ORTHO05D009641 7.4e-52 209.9 169 59.8
BraA06t24162Z Brassica rapa HOM05D007623 ORTHO05D009641 1.7e-51 208.8 285 43.9
A06p09730 Brassica napus HOM05D007623 ORTHO05D009641 2.8e-51 208.0 285 43.5
Ah.03g137460 Amaranthus hybridus HOM05D007623 ORTHO05D009641 9.1e-50 203.0 254 44.5
C05p11430 Brassica napus HOM05D007623 ORTHO05D009641 1.0e-48 199.5 283 42.8
Migut.E00256 Erythranthe guttata HOM05D007623 ORTHO05D009641 1.0e-48 199.5 253 45.5
BolC5t29896H Brassica oleracea HOM05D007623 ORTHO05D009641 3.6e-46 191.0 255 43.9
Ciclev10031004m.g Citrus clementina HOM05D007623 ORTHO05D009641 1.7e-43 182.2 124 68.5
Gohir.D02G132000 Gossypium hirsutum HOM05D007623 ORTHO05D009641 2.8e-43 181.4 126 71.4
TAR374G0443 Trochodendron aralioides HOM05D007623 ORTHO05D009641 2.0e-41 175.3 125 64.8
SGA_v2.0_scaffold287G47196 Striga asiatica HOM05D007623 ORTHO05D009641 5.9e-41 173.7 243 41.6
Zm00001eb045730 Zea mays HOM05D007623 ORTHO05D009641 4.2e-39 167.5 166 50.0
Peaxi162Scf00188g01015 Petunia axillaris HOM05D007623 ORTHO05D009641 4.7e-38 164.1 122 66.4
Nitab4.5_0011373g0020 Nicotiana tabacum HOM05D007623 ORTHO05D009641 4.4e-36 157.5 124 64.5
ATR0048G027 Amborella trichopoda HOM05D007623 ORTHO05D009641 7.5e-36 156.8 152 47.4
Nitab4.5_0000259g0170 Nicotiana tabacum HOM05D007623 ORTHO05D009641 7.5e-36 156.8 124 62.9
Lsat_1_v5_gn_3_22320 Lactuca sativa HOM05D007623 ORTHO05D009641 7.0e-34 150.2 183 49.2
AT1G13630 Arabidopsis thaliana HOM05D007623 ORTHO05D009641 1.0e-32 146.4 130 55.4
HPP92_001379 Vanilla planifolia HOM05D007623 ORTHO05D009641 1.5e-31 142.5 183 42.6
CARHR013990 Cardamine hirsuta HOM05D007623 ORTHO05D009641 2.3e-29 135.2 112 59.8
BcaB08g34697 Brassica carinata HOM05D007623 ORTHO05D009641 1.5e-28 132.5 128 54.7
Cpa.g.c32845 Carica papaya HOM05D007623 ORTHO05D009641 3.4e-28 131.3 154 50.6
SEGI_39043 Sequoiadendron giganteum HOM05D007623 ORTHO05D009641 2.7e-25 121.7 185 35.7
TAR374G1445 Trochodendron aralioides HOM05D007623 ORTHO05D009641 1.9e-23 115.5 143 48.3
BcaB06g28282 Brassica carinata HOM05D007623 ORTHO05D009641 5.5e-23 114.0 125 49.6
CAN.G680.12 Capsicum annuum HOM05D007623 ORTHO05D009641 5.5e-23 114.0 95 61.1
Lalb_Chr02g0154661 Lupinus albus HOM05D007291 ORTHO05D009038 1.4e-18 99.4 237 28.7
CARHR014000 Cardamine hirsuta HOM05D007623 ORTHO05D009641 1.3e-16 92.8 165 36.4
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 4.7e-14 84.3 195 28.2
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 4.0e-13 81.3 195 27.2
SEGI_32122 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 4.0e-13 81.3 211 26.5
Rhsim13G0154100 Rhododendron simsii HOM05D002890 ORTHO05D009847 5.2e-13 80.9 233 26.6
Lalb_Chr01g0001971 Lupinus albus HOM05D002890 ORTHO05D009847 8.9e-13 80.1 196 29.1
THA.LOC104805618 Tarenaya hassleriana HOM05D007291 ORTHO05D009038 1.2e-12 79.7 192 28.1
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 2.0e-12 79.0 201 26.4
Thhalv10018418m.g Eutrema salsugineum HOM05D007291 ORTHO05D009038 2.0e-12 79.0 189 28.0
RcHm_v2.0_Chr7g0231291 Rosa chinensis HOM05D007291 ORTHO05D009038 2.0e-12 79.0 190 25.8
Sed0010805 Sechium edule HOM05D002890 ORTHO05D009847 3.4e-12 78.2 234 24.4
Hma1.2p1_0524F.1_g172380 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 4.4e-12 77.8 185 25.9
RcHm_v2.0_Chr7g0231271 Rosa chinensis HOM05D007291 ORTHO05D009038 4.4e-12 77.8 190 25.8
Hma1.2p1_1840F.1_g304950 Hydrangea macrophylla HOM05D007291 ORTHO05D009038 5.8e-12 77.4 185 25.9
Prupe.4G237400 Prunus persica HOM05D007291 ORTHO05D009038 9.8e-12 76.6 182 29.1
Aqoxy3G02430 Aquilegia oxysepala HOM05D007291 ORTHO05D009038 2.2e-11 75.5 209 27.8
BcaC03g14744 Brassica carinata HOM05D007291 ORTHO05D009038 3.7e-11 74.7 198 27.3
C02p21950 Brassica napus HOM05D007291 ORTHO05D009038 3.7e-11 74.7 198 27.3
BolC2t08326H Brassica oleracea HOM05D007291 ORTHO05D009038 3.7e-11 74.7 198 27.3
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 4.9e-11 74.3 294 23.8
Potri.010G137200 Populus trichocarpa HOM05D007623 ORTHO05D009641 4.9e-11 74.3 47 74.5
A02p13610 Brassica napus HOM05D007291 ORTHO05D009038 6.4e-11 73.9 198 26.8
BraA02t06420Z Brassica rapa HOM05D007291 ORTHO05D009038 6.4e-11 73.9 198 26.8
Gohir.D05G340000 Gossypium hirsutum HOM05D007291 ORTHO05D009038 6.4e-11 73.9 183 26.8
TWI74G1032 Tripterygium wilfordii HOM05D007291 ORTHO05D009038 6.4e-11 73.9 202 25.2
BcaB01g06201 Brassica carinata HOM05D007455 ORTHO05D009431 8.3e-11 73.6 192 26.0
DCAR_003433 Daucus carota HOM05D007291 ORTHO05D009038 8.3e-11 73.6 251 25.9
Gorai.009G366400 Gossypium raimondii HOM05D007291 ORTHO05D009038 1.1e-10 73.2 191 27.2
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 1.4e-10 72.8 176 23.9
Solyc05g010790.3 Solanum lycopersicum HOM05D007623 ORTHO05D009641 2.4e-10 72.0 78 44.9
ClCG03G012670 Citrullus lanatus HOM05D007455 ORTHO05D009431 3.2e-10 71.6 231 26.4
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 3.2e-10 71.6 219 25.6
Sc03g0007430 Simmondsia chinensis HOM05D000068 ORTHO05D004691 3.2e-10 71.6 254 24.0
CsaV3_1G043280 Cucumis sativus L. HOM05D007455 ORTHO05D009431 4.1e-10 71.2 239 25.1
CiPaw.01G118600 Carya illinoinensis HOM05D007291 ORTHO05D009038 5.4e-10 70.9 198 25.3
Potri.001G276500 Populus trichocarpa HOM05D007455 ORTHO05D009431 5.4e-10 70.9 160 26.2
Rhsim13G0211000 Rhododendron simsii HOM05D007455 ORTHO05D009431 5.4e-10 70.9 162 25.3
Gorai.009G365100 Gossypium raimondii HOM05D007291 ORTHO05D009038 7.0e-10 70.5 200 28.0
QL04p014212 Quercus lobata HOM05D007455 ORTHO05D009431 7.0e-10 70.5 263 27.4
CSS0035807 Camellia sinensis var. sinensis HOM05D007455 ORTHO05D009431 9.2e-10 70.1 165 26.1
Carub.0002s1237 Capsella rubella HOM05D007291 ORTHO05D009038 9.2e-10 70.1 206 26.7
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 1.6e-09 69.3 227 26.0
Manes.01G179300 Manihot esculenta HOM05D007455 ORTHO05D009431 1.6e-09 69.3 154 26.6
Rhsim08G0018600 Rhododendron simsii HOM05D001542 ORTHO05D001416 1.6e-09 69.3 287 22.0
Solyc05g051340.3 Solanum lycopersicum HOM05D007291 ORTHO05D009038 2.0e-09 68.9 273 24.5
MELO3C015131.2 Cucumis melo HOM05D007455 ORTHO05D009431 2.7e-09 68.6 255 26.3
Ah.10g029280 Amaranthus hybridus HOM05D007623 ORTHO05D009641 3.5e-09 68.2 127 35.4
Lsat_1_v5_gn_2_69440 Lactuca sativa HOM05D007291 ORTHO05D009038 4.6e-09 67.8 278 23.4
Lalb_Chr01g0001381 Lupinus albus HOM05D007212 ORTHO05D009094 6.0e-09 67.4 201 25.9
Sopen05g029730 Solanum pennellii HOM05D007291 ORTHO05D009038 6.0e-09 67.4 270 23.3
HPP92_001923 Vanilla planifolia HOM05D007455 ORTHO05D009431 6.0e-09 67.4 174 24.7
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 7.8e-09 67.0 202 24.8
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 1.0e-08 66.6 233 26.6
CAN.G1181.19 Capsicum annuum HOM05D007291 ORTHO05D009038 1.3e-08 66.2 272 22.4
COL.COLO4_05199 Corchorus olitorius HOM05D007455 ORTHO05D009431 1.3e-08 66.2 228 27.6
Manes.01G179100 Manihot esculenta HOM05D007455 ORTHO05D009431 1.3e-08 66.2 266 25.2
SEGI_33508 Sequoiadendron giganteum HOM05D006858 ORTHO05D008767 1.3e-08 66.2 178 28.1
Medtr4g075270 Medicago truncatula HOM05D007212 ORTHO05D009094 1.7e-08 65.9 217 26.3
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 1.7e-08 65.9 198 27.8
Sc16g0011110 Simmondsia chinensis HOM05D007455 ORTHO05D009431 2.3e-08 65.5 231 25.5
Dinv28212 Davidia involucrata HOM05D007291 ORTHO05D009038 3.9e-08 64.7 186 25.8
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 5.0e-08 64.3 235 24.7
HanXRQChr06g0182581 Helianthus annuus HOM05D007455 ORTHO05D009431 5.0e-08 64.3 166 22.9
Sed0025332 Sechium edule HOM05D007455 ORTHO05D009431 5.0e-08 64.3 210 23.8
PSO339G2893 Papaver somniferum HOM05D007455 ORTHO05D009431 6.6e-08 63.9 183 24.0
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 8.6e-08 63.5 233 25.8
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 8.6e-08 63.5 235 24.7
Phvul.003G029100 Phaseolus vulgaris HOM05D007426 ORTHO05D009167 8.6e-08 63.5 158 25.9
SEGI_34198 Sequoiadendron giganteum HOM05D007545 ORTHO05D009579 8.6e-08 63.5 149 28.2
AT1G66345 Arabidopsis thaliana HOM05D007291 ORTHO05D009038 1.5e-07 62.8 182 25.8
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 1.9e-07 62.4 194 26.8
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 2.5e-07 62.0 202 25.2
ECA232G4213 Erigeron canadensis HOM05D007455 ORTHO05D009431 3.3e-07 61.6 140 24.3
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 3.3e-07 61.6 213 26.8
arahy.Tifrunner.gnm1.ann1.C93D89 Arachis hypogaea HOM05D007212 ORTHO05D009094 4.3e-07 61.2 215 25.1
Cc09_g01660 Coffea canephora HOM05D002890 ORTHO05D009847 4.3e-07 61.2 173 25.4
Os05g0275100 Oryza sativa ssp. japonica HOM05D007639 ORTHO05D009509 7.3e-07 60.5 185 27.0
PSO832G0129 Papaver somniferum HOM05D007570 ORTHO05D009365 7.3e-07 60.5 133 30.8
Sed0024711 Sechium edule HOM05D007291 ORTHO05D009038 7.3e-07 60.5 198 22.2
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 7.3e-07 60.5 155 27.1
Sp5g21370 Schrenkiella parvula HOM05D007291 ORTHO05D009038 9.5e-07 60.1 173 24.9
PSO210G6895 Papaver somniferum HOM05D007570 ORTHO05D009365 1.2e-06 59.7 131 31.3
TPR.G17150 Trifolium pratense HOM05D007212 ORTHO05D009094 1.2e-06 59.7 220 24.1
Actinidia05689 Actinidia chinensis HOM05D007639 ORTHO05D009509 1.6e-06 59.3 209 23.0
Haze_23220 Corylus avellana HOM05D007455 ORTHO05D009431 1.6e-06 59.3 191 25.7
Eucgr.I00129 Eucalyptus grandis HOM05D007623 ORTHO05D009641 1.6e-06 59.3 46 58.7
Nn5g30586 Nelumbo nucifera HOM05D005287 ORTHO05D006893 1.6e-06 59.3 137 33.6
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 2.1e-06 58.9 215 27.4
Lsat_1_v5_gn_3_22340 Lactuca sativa HOM05D007623 ORTHO05D009641 2.1e-06 58.9 43 60.5
Oeu032258.1 Olea europaea HOM05D007291 ORTHO05D009038 2.1e-06 58.9 177 22.0
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 2.8e-06 58.5 162 25.3
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 3.6e-06 58.2 125 26.4
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 3.6e-06 58.2 162 23.5
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 3.6e-06 58.2 162 23.5
Prupe.7G020200 Prunus persica HOM05D030010 ORTHO05D021352 4.7e-06 57.8 47 55.3


User provided reference genes

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