Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G090200 Manihot esculenta HOM05D007643 ORTHO05D007801 6.7e-64 247.3 134 100.0
Manes.06G079602 Manihot esculenta HOM05D007643 ORTHO05D007801 1.9e-34 149.4 119 63.9
Duzib068G1429 Durio zibethinus HOM05D007643 ORTHO05D007801 4.0e-32 141.7 122 58.2
COL.COLO4_28832 Corchorus olitorius HOM05D007643 ORTHO05D007801 3.7e-30 135.2 121 58.7
Thecc.03G110800 Theobroma cacao HOM05D007643 ORTHO05D007801 3.7e-30 135.2 122 54.9
Ciclev10022625m.g Citrus clementina HOM05D007643 ORTHO05D007801 4.9e-30 134.8 125 56.0
Potri.012G065400 Populus trichocarpa HOM05D007643 ORTHO05D007801 1.4e-29 133.3 88 68.2
Sabra12G0046800 Salix brachista HOM05D007643 ORTHO05D007801 1.4e-29 133.3 98 64.3
Gohir.A12G184500 Gossypium hirsutum HOM05D007643 ORTHO05D007801 7.8e-28 127.5 118 53.4
Gohir.D12G187200 Gossypium hirsutum HOM05D007643 ORTHO05D007801 1.0e-27 127.1 122 52.5
Gorai.008G200700 Gossypium raimondii HOM05D007643 ORTHO05D007801 1.7e-27 126.3 122 52.5
TWI15G0080 Tripterygium wilfordii HOM05D007643 ORTHO05D007801 3.9e-27 125.2 134 51.5
TWI81G0573 Tripterygium wilfordii HOM05D007643 ORTHO05D007801 8.6e-27 124.0 123 54.5
Gorai.007G040800 Gossypium raimondii HOM05D007643 ORTHO05D007801 1.1e-26 123.6 99 58.6
Cfa019854 Carpinus fangiana HOM05D007643 ORTHO05D007801 1.5e-26 123.2 98 60.2
Gohir.D11G038100 Gossypium hirsutum HOM05D007643 ORTHO05D007801 2.5e-26 122.5 99 58.6
Prupe.5G211300 Prunus persica HOM05D007643 ORTHO05D007801 7.3e-26 120.9 117 55.6
QL10p021414 Quercus lobata HOM05D007643 ORTHO05D007801 1.4e-24 116.7 104 54.8
Sed0015671 Sechium edule HOM05D007643 ORTHO05D007801 2.3e-24 115.9 118 49.2
CiPaw.15G116100 Carya illinoinensis HOM05D007643 ORTHO05D007801 1.2e-23 113.6 102 52.9
ClCG06G015360 Citrullus lanatus HOM05D007643 ORTHO05D007801 2.6e-23 112.5 118 49.2
THA.LOC104800981 Tarenaya hassleriana HOM05D007643 ORTHO05D007801 3.4e-23 112.1 93 55.9
THA.LOC104818362 Tarenaya hassleriana HOM05D007643 ORTHO05D007801 4.4e-23 111.7 114 50.9
RcHm_v2.0_Chr7g0183911 Rosa chinensis HOM05D007643 ORTHO05D007801 1.7e-22 109.8 110 50.0
MD14G1217500 Malus domestica HOM05D007643 ORTHO05D007801 4.9e-22 108.2 117 49.6
CsaV3_1G003240 Cucumis sativus L. HOM05D007643 ORTHO05D007801 1.1e-21 107.1 118 48.3
MD06G1206900 Malus domestica HOM05D007643 ORTHO05D007801 2.4e-21 105.9 116 50.0
Eucgr.K02633 Eucalyptus grandis HOM05D007643 ORTHO05D007801 4.1e-21 105.1 81 59.3
GSVIVG01008172001 Vitis vinifera HOM05D007643 ORTHO05D007801 7.1e-21 104.4 148 41.2
FAN08G1142 Fragaria x ananassa HOM05D007643 ORTHO05D007801 9.2e-21 104.0 122 46.7
Lalb_Chr23g0273871 Lupinus albus HOM05D007643 ORTHO05D007801 2.7e-20 102.4 107 45.8
FAN18G4512 Fragaria x ananassa HOM05D007643 ORTHO05D007801 3.5e-20 102.1 128 46.9
Actinidia18967 Actinidia chinensis HOM05D007643 ORTHO05D007801 6.0e-20 101.3 124 45.2
Glyma.06G180500 Glycine max HOM05D007643 ORTHO05D007801 3.0e-19 99.0 106 49.1
Aa31LG11G2440 Aethionema arabicum HOM05D007643 ORTHO05D007801 3.9e-19 98.6 96 46.9
Glyma.04G185600 Glycine max HOM05D007643 ORTHO05D007801 3.9e-19 98.6 114 46.5
arahy.Tifrunner.gnm1.ann1.Z569TI Arachis hypogaea HOM05D007643 ORTHO05D007801 5.1e-19 98.2 108 50.0
vmacro16469 Vaccinium macrocarpon HOM05D007643 ORTHO05D007801 5.1e-19 98.2 116 45.7
MELO3C017259.2 Cucumis melo HOM05D007643 ORTHO05D007801 8.6e-19 97.4 71 59.2
PSO782G0046 Papaver somniferum HOM05D007643 ORTHO05D007801 8.6e-19 97.4 106 40.6
Actinidia35057 Actinidia chinensis HOM05D007643 ORTHO05D007801 1.5e-18 96.7 104 46.2
Rhsim12G0146900 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.9e-18 96.3 96 47.9
PGR044G0452 Punica granatum HOM05D007643 ORTHO05D007801 3.3e-18 95.5 105 50.5
Dinv36824 Davidia involucrata HOM05D007643 ORTHO05D007801 4.3e-18 95.1 81 50.6
Medtr2g059060 Medicago truncatula HOM05D007643 ORTHO05D007801 9.5e-18 94.0 120 45.8
PSO063G2669 Papaver somniferum HOM05D007643 ORTHO05D007801 9.5e-18 94.0 106 38.7
Psat1g029200 Pisum sativum HOM05D007643 ORTHO05D007801 9.5e-18 94.0 126 45.2
Atru.chr9.639 Acer truncatum HOM05D007643 ORTHO05D007801 1.6e-17 93.2 80 53.8
Phvul.009G176200 Phaseolus vulgaris HOM05D007643 ORTHO05D007801 2.1e-17 92.8 78 55.1
CANSAT11G0293 Cannabis sativa HOM05D007643 ORTHO05D007801 2.8e-17 92.4 71 60.6
TPR.G15310 Trifolium pratense HOM05D007643 ORTHO05D007801 1.4e-16 90.1 109 45.9
Dinv38625 Davidia involucrata HOM05D007643 ORTHO05D007801 3.4e-15 85.5 78 48.7
Sp2g24160 Schrenkiella parvula HOM05D010173 ORTHO05D007801 9.9e-15 84.0 104 44.2
Thhalv10004975m.g Eutrema salsugineum HOM05D010173 ORTHO05D007801 1.7e-14 83.2 100 46.0
HPP92_019460 Vanilla planifolia HOM05D007643 ORTHO05D007801 5.4e-13 78.2 115 40.0
ATR0691G209 Amborella trichopoda HOM05D007643 ORTHO05D007801 1.6e-12 76.6 95 42.1
Aqoxy3G03786 Aquilegia oxysepala HOM05D007643 ORTHO05D007801 2.1e-12 76.3 78 46.2
CDE02G0802 Ceratophyllum demersum HOM05D007643 ORTHO05D007801 2.1e-12 76.3 80 45.0
CSS0044770 Camellia sinensis var. sinensis HOM05D007643 ORTHO05D007801 6.0e-12 74.7 78 46.2
Os09g0473966 Oryza sativa ssp. japonica HOM05D007643 ORTHO05D007801 7.8e-12 74.3 69 56.5
AUR62032152 Chenopodium quinoa HOM05D007643 ORTHO05D007801 1.0e-11 73.9 69 46.4
MSTRG.9860 Avicennia marina HOM05D007643 ORTHO05D007801 1.7e-11 73.2 92 42.4
Oeu059396.1 Olea europaea HOM05D007643 ORTHO05D007801 3.0e-11 72.4 78 43.6
Migut.G00548 Erythranthe guttata HOM05D007643 ORTHO05D007801 6.6e-11 71.2 74 41.9
Lj1g0019261 Lotus japonicus HOM05D007643 ORTHO05D007801 8.6e-11 70.9 111 37.8
AUR62039686 Chenopodium quinoa HOM05D007643 ORTHO05D007801 1.9e-10 69.7 69 44.9
Ca_26376_v3 Cicer arietinum L. HOM05D007643 ORTHO05D007801 2.5e-10 69.3 110 37.3
BcaNung02618 Brassica carinata HOM05D010173 ORTHO05D007801 5.6e-10 68.2 116 37.9
C07p44600 Brassica napus HOM05D010173 ORTHO05D007801 5.6e-10 68.2 116 37.9
BolC7t44981H Brassica oleracea HOM05D010173 ORTHO05D007801 5.6e-10 68.2 116 37.9
Lsat_1_v5_gn_4_112541 Lactuca sativa HOM05D007643 ORTHO05D007801 5.6e-10 68.2 69 46.4
SGA_v2.0_scaffold67G22694 Striga asiatica HOM05D007643 ORTHO05D007801 5.6e-10 68.2 70 44.3
A03p46540 Brassica napus HOM05D010173 ORTHO05D007801 7.3e-10 67.8 72 41.7
BraA03t13778Z Brassica rapa HOM05D010173 ORTHO05D007801 7.3e-10 67.8 72 41.7
Zm00001eb101340 Zea mays HOM05D007643 ORTHO05D007801 7.3e-10 67.8 58 55.2
SEGI_00634 Sequoiadendron giganteum HOM05D007643 ORTHO05D007801 9.6e-10 67.4 79 48.1
AL269U10022 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 2.1e-09 66.2 103 38.8
AL269U10040 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 2.1e-09 66.2 103 38.8
AL269U10050 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 2.1e-09 66.2 103 38.8
AL3G41370 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 2.1e-09 66.2 103 38.8
AL3G41380 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 2.1e-09 66.2 103 38.8
AL3G41390 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 2.1e-09 66.2 103 38.8
MSTRG.4170 Avicennia marina HOM05D007643 ORTHO05D007801 2.1e-09 66.2 79 43.0
Hund02541 Selenicereus undatus HOM05D007643 ORTHO05D007801 2.1e-09 66.2 151 34.4
unitig_746.g26846 Utricularia gibba HOM05D007643 ORTHO05D007801 2.1e-09 66.2 78 38.5
ECA232G2778 Erigeron canadensis HOM05D007643 ORTHO05D007801 2.8e-09 65.9 74 39.2
BcaC06g33198 Brassica carinata HOM05D010173 ORTHO05D007801 3.6e-09 65.5 87 35.6
BcaNung05759 Brassica carinata HOM05D010173 ORTHO05D007801 3.6e-09 65.5 87 35.6
Zm00001eb199190 Zea mays HOM05D031404 ORTHO05D007801 3.6e-09 65.5 78 42.3
BcaNung02617 Brassica carinata HOM05D010173 ORTHO05D007801 6.2e-09 64.7 81 40.7
Haze_18546 Corylus avellana HOM05D007643 ORTHO05D007801 8.1e-09 64.3 36 75.0
FvH4_5g13250 Fragaria vesca HOM05D007643 ORTHO05D007801 8.1e-09 64.3 97 42.3
AL269U10030 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 1.1e-08 63.9 76 44.7
AL8G37440 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 1.4e-08 63.5 76 44.7
Nn3g17593 Nelumbo nucifera HOM05D007643 ORTHO05D007801 1.4e-08 63.5 66 48.5
CARHR274520 Cardamine hirsuta HOM05D010173 ORTHO05D007801 4.0e-08 62.0 65 40.0
Nitab4.5_0000646g0290 Nicotiana tabacum HOM05D007643 ORTHO05D007801 4.0e-08 62.0 74 39.2
Nitab4.5_0002805g0050 Nicotiana tabacum HOM05D007643 ORTHO05D007801 4.0e-08 62.0 108 31.5
Zm00001eb033620 Zea mays HOM05D031404 ORTHO05D007801 5.2e-08 61.6 78 39.7
CAN.G982.32 Capsicum annuum HOM05D007643 ORTHO05D007801 8.9e-08 60.8 75 37.3
Peaxi162Scf00017g03267 Petunia axillaris HOM05D007643 ORTHO05D007801 1.2e-07 60.5 70 38.6
Cc04_g08010 Coffea canephora HOM05D007643 ORTHO05D007801 2.0e-07 59.7 125 29.6
Nitab4.5_0002449g0120 Nicotiana tabacum HOM05D007643 ORTHO05D007801 2.0e-07 59.7 74 40.5
Nitab4.5_0004190g0030 Nicotiana tabacum HOM05D007643 ORTHO05D007801 2.0e-07 59.7 74 40.5
Sopen03g033740 Solanum pennellii HOM05D007643 ORTHO05D007801 2.0e-07 59.7 74 40.5
Carub.0008s2154 Capsella rubella HOM05D010173 ORTHO05D007801 2.6e-07 59.3 91 35.2
Sed0026794 Sechium edule HOM05D007643 ORTHO05D007801 2.6e-07 59.3 78 42.3
PGSC0003DMG400024520 Solanum tuberosum HOM05D007643 ORTHO05D007801 2.6e-07 59.3 74 40.5
Ah.02g114340 Amaranthus hybridus HOM05D007643 ORTHO05D007801 3.4e-07 58.9 107 35.5
AT5G60840 Arabidopsis thaliana HOM05D010173 ORTHO05D007801 9.9e-07 57.4 84 39.3
FAN13G0443 Fragaria x ananassa HOM05D007643 ORTHO05D007801 1.7e-06 56.6 53 49.1


User provided reference genes

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