Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 1.3e-181 639.8 377 100.0
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 2.2e-96 356.7 351 69.8
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 1.1e-90 337.8 357 59.4
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 7.6e-89 331.6 356 59.6
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 2.3e-85 320.1 358 56.1
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 8.7e-85 318.2 352 59.1
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 3.3e-84 316.2 348 59.8
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 2.2e-83 313.5 350 57.4
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 4.8e-83 312.4 349 59.0
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 1.1e-82 311.2 321 62.9
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 4.1e-82 309.3 349 55.0
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.0e-81 307.0 352 59.7
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 3.8e-80 302.8 347 59.1
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 7.2e-79 298.5 360 55.8
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 1.4e-77 294.3 347 55.6
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 1.8e-77 293.9 347 55.9
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 1.1e-76 291.2 350 51.7
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 3.3e-76 289.7 355 55.2
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 5.7e-76 288.9 345 56.2
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 7.4e-76 288.5 349 51.3
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 1.3e-75 287.7 343 56.6
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.8e-75 286.6 345 52.8
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 1.1e-74 284.6 350 54.3
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 6.9e-74 282.0 349 51.0
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 1.2e-73 281.2 372 47.8
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 2.9e-72 276.6 345 55.7
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 6.5e-72 275.4 350 54.9
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.4e-69 267.7 344 55.2
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 1.4e-69 267.7 390 45.9
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 6.7e-69 265.4 346 51.4
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 1.1e-68 264.6 345 53.9
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 2.0e-68 263.8 344 55.8
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 2.0e-68 263.8 344 55.5
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.6e-68 263.5 348 49.1
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 4.4e-68 262.7 347 46.7
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 1.3e-67 261.2 305 53.8
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 1.7e-67 260.8 347 46.1
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 4.8e-67 259.2 351 49.6
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 6.3e-67 258.8 345 55.1
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 1.4e-66 257.7 344 50.6
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 4.1e-66 256.1 347 52.4
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.6e-65 254.2 360 53.3
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 1.6e-65 254.2 343 51.0
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 3.5e-65 253.1 345 51.9
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 4.5e-65 252.7 348 46.8
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 1.3e-64 251.1 349 49.3
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 2.9e-64 250.0 345 51.6
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 4.2e-63 246.1 351 51.3
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 4.2e-63 246.1 306 52.0
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 7.2e-63 245.4 352 49.7
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.6e-62 244.2 354 50.3
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 1.6e-62 244.2 511 40.1
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 3.0e-61 240.0 345 49.6
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 3.0e-61 240.0 318 46.2
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 5.2e-61 239.2 345 45.2
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 3.3e-60 236.5 350 43.7
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 7.5e-60 235.3 362 44.8
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 9.7e-60 235.0 350 44.3
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 1.3e-59 234.6 353 50.1
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 1.7e-59 234.2 344 52.6
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 1.7e-59 234.2 349 48.4
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 1.8e-58 230.7 359 46.5
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.4e-58 230.3 351 49.3
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 4.1e-58 229.6 353 49.9
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 1.6e-57 227.6 260 58.8
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 2.7e-57 226.9 343 50.7
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 4.5e-57 226.1 356 44.9
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 4.5e-57 226.1 353 49.3
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.5e-55 221.1 300 52.7
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 1.9e-55 220.7 292 54.5
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.2e-55 219.9 351 47.6
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 5.5e-55 219.2 341 48.1
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 7.2e-55 218.8 342 42.7
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 1.2e-54 218.0 356 42.7
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 4.7e-54 216.1 338 45.3
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 8.0e-54 215.3 356 45.8
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 1.0e-53 214.9 299 44.1
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 1.0e-53 214.9 341 42.8
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 1.4e-53 214.5 341 42.5
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 2.3e-53 213.8 350 42.0
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 4.0e-53 213.0 293 48.1
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 4.0e-53 213.0 336 45.2
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 1.5e-52 211.1 209 66.0
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 2.6e-52 210.3 293 48.8
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 3.4e-52 209.9 297 50.8
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 7.5e-52 208.8 288 46.5
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 7.5e-52 208.8 305 44.3
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 4.8e-51 206.1 242 62.0
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 4.1e-50 203.0 347 44.1
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.2e-49 201.4 313 47.9
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 4.5e-49 199.5 347 40.6
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 7.7e-49 198.7 243 56.0
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 7.7e-49 198.7 306 48.4
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.0e-48 198.4 351 39.3
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 1.7e-48 197.6 349 44.4
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 8.5e-48 195.3 298 48.7
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 3.2e-47 193.4 446 36.8
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 3.6e-46 189.9 340 40.0
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 8.0e-46 188.7 348 43.1
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 8.0e-46 188.7 237 48.5
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.0e-45 188.3 269 52.8
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 1.8e-45 187.6 353 40.5
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 2.3e-45 187.2 319 48.9
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 4.0e-45 186.4 348 39.9
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 6.3e-43 179.1 343 38.8
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 6.3e-43 179.1 309 44.0
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 3.1e-42 176.8 345 37.1
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 3.1e-42 176.8 345 37.1
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 2.7e-41 173.7 288 38.2
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 5.0e-40 169.5 256 48.8
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 1.2e-38 164.9 344 41.3
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.0e-37 161.8 303 38.3
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.2e-36 158.3 346 33.8
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 9.8e-36 155.2 340 35.9
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 1.7e-35 154.5 342 34.8
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 2.4e-34 150.6 345 34.2
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 7.8e-33 145.6 294 34.4
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 1.5e-31 141.4 344 33.4
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 5.6e-31 139.4 297 35.4
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 7.3e-31 139.0 305 36.4
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 2.8e-30 137.1 305 32.1
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 1.8e-29 134.4 344 32.0
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 1.3e-27 128.3 289 31.8
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.7e-27 127.9 122 58.2
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 7.8e-25 119.0 234 36.8
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 6.2e-22 109.4 167 52.1
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 8.9e-21 105.5 131 51.1
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 1.5e-20 104.8 296 33.8
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 1.1e-18 98.6 189 35.4
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 2.4e-18 97.4 290 32.1
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.4e-18 97.4 106 51.9
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.1e-17 94.4 282 37.2
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 3.5e-17 93.6 294 28.6
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 8.6e-16 89.0 350 29.4
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 3.3e-15 87.0 101 48.5
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 4.3e-15 86.7 248 29.8
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 2.1e-14 84.3 103 46.6
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 3.6e-14 83.6 77 57.1
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 1.5e-12 78.2 197 37.6
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.1e-10 72.0 75 54.7
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.9e-10 71.2 96 39.6
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 3.5e-09 67.0 81 48.1


User provided reference genes

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