Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 1.2e-197 693.0 348 100.0
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 1.1e-126 457.2 348 69.3
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 2.0e-99 366.7 351 58.4
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 1.2e-93 347.4 351 57.5
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 7.5e-91 338.2 349 55.3
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 6.0e-88 328.6 351 54.1
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 2.5e-86 323.2 354 54.8
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 1.1e-84 317.8 349 52.4
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 1.8e-84 317.0 349 50.4
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.5e-83 313.9 348 51.7
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 3.4e-83 312.8 348 51.4
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 4.4e-83 312.4 349 51.0
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 5.8e-83 312.0 367 49.9
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 4.9e-82 308.9 343 52.5
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 4.1e-81 305.8 349 50.4
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 4.6e-80 302.4 349 50.7
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 2.3e-79 300.1 356 50.0
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 2.3e-79 300.1 346 49.7
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 5.1e-79 298.9 351 48.7
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 8.6e-79 298.1 355 50.4
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 1.1e-78 297.7 378 48.7
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 1.5e-78 297.4 351 49.6
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 2.4e-76 290.0 344 49.4
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 1.3e-74 284.3 352 50.3
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.7e-74 283.9 348 48.9
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 1.7e-74 283.9 351 50.4
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 1.4e-73 280.8 353 49.3
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 1.9e-73 280.4 326 48.2
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 2.4e-73 280.0 337 47.5
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 7.1e-73 278.5 339 46.9
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 9.3e-73 278.1 349 45.6
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.2e-72 277.7 328 48.5
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 1.6e-72 277.3 345 47.8
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 3.5e-72 276.2 347 45.2
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 3.5e-72 276.2 347 45.2
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 1.0e-71 274.6 342 46.5
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 8.7e-71 271.6 351 45.3
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 1.1e-70 271.2 341 45.2
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 1.1e-70 271.2 349 47.0
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 1.5e-70 270.8 322 49.4
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 4.3e-70 269.2 354 44.9
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 5.6e-70 268.9 355 45.1
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 5.6e-70 268.9 343 46.4
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 9.6e-70 268.1 340 44.1
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 9.6e-70 268.1 341 44.3
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 9.6e-70 268.1 341 44.3
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 6.2e-69 265.4 348 47.4
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 6.2e-69 265.4 282 51.8
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 1.8e-68 263.8 375 45.6
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 1.8e-68 263.8 211 60.7
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 1.8e-68 263.8 345 46.4
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 4.0e-68 262.7 351 45.6
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 1.2e-67 261.2 353 46.2
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 2.0e-67 260.4 237 54.9
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 3.4e-67 259.6 354 47.7
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 3.4e-67 259.6 391 42.2
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 2.9e-66 256.5 324 45.4
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 6.4e-66 255.4 332 45.8
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 4.2e-65 252.7 377 41.6
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 1.6e-64 250.8 326 45.1
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 1.6e-64 250.8 312 46.5
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 2.1e-64 250.4 284 47.9
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 3.5e-64 249.6 301 48.2
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 5.1e-63 245.7 347 43.5
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 6.6e-63 245.4 320 46.6
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 6.6e-63 245.4 320 46.6
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 6.6e-63 245.4 320 43.8
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 1.1e-62 244.6 313 44.7
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 3.3e-62 243.0 285 48.8
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 7.4e-62 241.9 357 42.9
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 2.8e-61 240.0 305 47.5
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 1.4e-60 237.7 348 42.2
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 1.8e-60 237.3 232 55.6
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 1.2e-59 234.6 234 52.6
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 9.9e-59 231.5 351 41.6
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 9.9e-59 231.5 255 51.8
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.7e-58 230.7 346 42.2
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 3.8e-58 229.6 343 41.1
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 6.4e-58 228.8 355 40.3
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 6.4e-58 228.8 209 53.6
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 7.1e-57 225.3 209 53.1
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.6e-56 224.2 365 43.3
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 4.6e-56 222.6 257 49.4
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 7.4e-54 215.3 288 43.8
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 1.3e-53 214.5 193 55.4
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.1e-52 211.5 213 53.5
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 1.8e-52 210.7 274 43.8
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 9.0e-52 208.4 212 52.4
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 1.2e-51 208.0 207 52.7
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 1.5e-51 207.6 207 52.7
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.5e-50 202.2 345 42.3
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.5e-50 202.2 349 39.8
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 2.5e-49 200.3 282 42.2
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 9.3e-49 198.4 357 40.1
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 8.7e-47 191.8 211 50.2
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.5e-46 191.0 219 44.3
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 2.5e-46 190.3 286 42.0
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.3e-45 188.0 295 41.4
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 2.1e-45 187.2 197 50.8
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 1.0e-42 178.3 268 39.6
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 6.5e-42 175.6 222 45.9
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.1e-41 174.9 198 49.0
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.9e-41 174.1 285 40.4
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 1.9e-41 174.1 354 37.6
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 6.1e-40 169.1 183 50.8
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 7.9e-40 168.7 285 40.7
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 7.9e-40 168.7 231 40.7
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 1.0e-39 168.3 228 44.7
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 1.8e-39 167.5 214 47.2
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 3.9e-39 166.4 237 42.2
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 1.1e-38 164.9 319 38.9
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 4.3e-38 162.9 318 42.1
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 1.6e-37 161.0 283 39.2
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 2.2e-37 160.6 194 45.4
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 8.2e-37 158.7 128 60.2
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 4.1e-36 156.4 229 41.9
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 5.3e-36 156.0 228 40.8
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 2.0e-35 154.1 221 43.9
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 5.9e-35 152.5 205 45.4
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 7.7e-35 152.1 125 58.4
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 3.8e-34 149.8 171 49.1
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 1.1e-33 148.3 159 47.2
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 7.9e-32 142.1 251 37.5
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 1.0e-31 141.7 204 42.2
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.0e-31 140.2 352 33.5
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.7e-29 134.4 133 50.4
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 4.8e-29 132.9 215 35.3
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 6.3e-29 132.5 145 51.7
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 9.1e-28 128.6 171 42.1
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 1.2e-27 128.3 121 59.5
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 4.5e-27 126.3 116 53.4
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 1.3e-26 124.8 223 41.3
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.7e-26 124.4 235 40.0
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 2.9e-26 123.6 219 38.4
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.9e-26 123.6 175 45.1
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 2.5e-25 120.6 92 64.1
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 3.0e-23 113.6 116 45.7
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.0e-22 110.9 74 66.2
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 3.3e-22 110.2 101 53.5
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 2.5e-17 94.0 76 56.6
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 8.0e-16 89.0 67 65.7
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-14 84.3 159 35.2
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 5.9e-11 72.8 73 52.1
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 2.2e-10 70.9 176 35.8
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 5.0e-10 69.7 69 52.2
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 2.7e-08 63.9 82 46.3
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.2e-06 58.5 40 62.5


User provided reference genes

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