Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 2.1e-166 589.0 296 100.0
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 3.8e-136 488.4 296 83.1
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 1.0e-133 480.3 296 82.1
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 3.4e-132 475.3 298 79.5
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 7.5e-132 474.2 296 79.7
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 9.8e-132 473.8 297 80.5
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.2e-131 472.6 297 80.1
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 2.8e-131 472.2 320 75.3
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 4.9e-131 471.5 297 79.8
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 8.3e-131 470.7 296 78.7
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 8.3e-131 470.7 296 78.7
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 1.6e-129 466.5 296 78.4
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 2.0e-129 466.1 296 80.1
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 3.5e-129 465.3 297 79.8
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 5.9e-129 464.5 296 80.1
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 5.9e-129 464.5 296 79.4
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 7.7e-129 464.2 297 77.4
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 2.9e-128 462.2 295 78.6
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 1.9e-127 459.5 296 78.7
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 5.6e-127 458.0 296 76.7
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 4.0e-125 451.8 296 76.7
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 4.0e-125 451.8 296 75.3
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 1.5e-124 449.9 284 79.6
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 2.9e-123 445.7 296 75.0
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 4.9e-123 444.9 297 77.1
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 1.4e-122 443.4 302 75.2
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 1.8e-122 443.0 296 75.0
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 2.4e-122 442.6 302 74.8
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 2.0e-121 439.5 252 87.3
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 3.5e-121 438.7 299 74.9
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 5.9e-121 438.0 296 73.0
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.3e-120 436.8 309 72.5
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 1.7e-120 436.4 299 73.2
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 2.3e-120 436.0 296 72.3
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 8.6e-120 434.1 296 74.3
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 1.6e-118 429.9 297 74.4
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 2.8e-118 429.1 300 72.7
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 4.7e-118 428.3 296 71.3
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 6.2e-118 427.9 301 74.1
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 8.0e-118 427.6 311 69.5
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 2.3e-117 426.0 298 73.8
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 3.1e-117 425.6 299 72.2
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 4.0e-117 425.2 296 70.9
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 6.8e-117 424.5 233 88.0
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 1.5e-116 423.3 296 73.3
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 2.0e-116 422.9 297 73.7
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 3.4e-116 422.2 290 73.4
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 4.4e-116 421.8 331 66.5
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 4.4e-116 421.8 295 71.5
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 5.8e-116 421.4 296 72.6
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 5.8e-116 421.4 296 73.0
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 1.3e-115 420.2 297 70.4
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 4.9e-115 418.3 295 71.2
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 8.3e-115 417.5 296 72.6
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 8.3e-115 417.5 255 83.1
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 1.1e-114 417.2 296 72.6
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 1.4e-114 416.8 303 71.3
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 1.4e-114 416.8 367 61.0
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 1.9e-114 416.4 296 70.6
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 1.9e-114 416.4 297 69.7
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 1.9e-114 416.4 295 70.5
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 2.4e-114 416.0 296 69.6
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 2.4e-114 416.0 298 72.5
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 3.2e-114 415.6 300 71.3
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 3.2e-114 415.6 255 82.4
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 3.2e-114 415.6 297 72.4
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 5.4e-114 414.8 296 69.3
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 9.2e-114 414.1 299 71.9
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 1.2e-113 413.7 299 70.6
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.2e-113 413.7 299 71.2
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 1.6e-113 413.3 297 69.0
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 2.0e-113 412.9 331 65.3
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 2.0e-113 412.9 297 68.4
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 2.0e-113 412.9 296 70.9
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 3.5e-113 412.1 297 68.4
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 4.6e-113 411.8 296 70.3
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 7.8e-113 411.0 296 67.9
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 7.8e-113 411.0 281 74.4
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 1.0e-112 410.6 300 72.3
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 1.7e-112 409.8 299 69.9
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 2.3e-112 409.5 297 69.7
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 2.3e-112 409.5 296 70.3
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 3.0e-112 409.1 294 68.7
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 3.0e-112 409.1 298 69.5
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 4.3e-111 405.2 297 68.4
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 7.3e-111 404.4 297 68.0
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 7.3e-111 404.4 297 68.0
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 7.3e-111 404.4 297 68.0
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 1.6e-110 403.3 255 78.4
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 2.8e-110 402.5 299 69.2
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 1.1e-109 400.6 299 69.9
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.4e-109 400.2 295 69.2
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 3.1e-109 399.1 298 69.1
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 8.9e-109 397.5 299 67.2
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.5e-108 396.7 255 76.9
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 3.4e-108 395.6 296 67.6
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 1.7e-107 393.3 296 69.6
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 2.9e-107 392.5 295 69.8
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.1e-106 390.6 283 70.0
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 1.6e-105 386.7 347 59.9
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 3.9e-104 382.1 299 67.6
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 4.3e-103 378.6 298 68.1
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 1.2e-102 377.1 302 66.2
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 4.0e-101 372.1 244 73.8
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 5.2e-101 371.7 243 76.1
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 2.0e-100 369.8 291 65.3
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 7.6e-100 367.9 287 65.9
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 9.9e-100 367.5 251 72.5
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.9e-98 363.2 270 67.8
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 4.1e-98 362.1 221 79.6
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 6.6e-96 354.8 256 71.9
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 4.3e-95 352.1 264 67.0
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 5.6e-95 351.7 261 67.8
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 9.6e-95 350.9 243 71.6
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.8e-93 346.7 255 69.8
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.9e-87 326.6 226 69.0
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 7.3e-87 324.7 213 77.5
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 1.3e-86 323.9 225 68.9
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 6.2e-86 321.6 253 68.8
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 8.1e-86 321.2 202 78.7
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 1.1e-85 320.9 228 68.0
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 9.9e-84 314.3 237 66.2
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 3.9e-80 302.4 219 67.1
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 1.2e-76 290.8 287 55.7
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.3e-72 277.3 257 54.5
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 1.2e-68 264.2 230 59.6
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.2e-67 260.0 424 39.6
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 3.2e-66 256.1 225 56.9
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 1.6e-62 243.8 142 84.5
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 3.8e-59 232.6 142 79.6
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 8.5e-59 231.5 243 48.6
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.4e-58 230.7 221 51.6
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 6.7e-56 221.9 133 80.5
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 9.1e-53 211.5 185 57.8
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 1.5e-52 210.7 155 69.0
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.3e-51 207.6 294 41.2
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.2e-50 203.0 250 43.6
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.6e-49 200.7 234 44.9
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 3.1e-45 186.4 165 61.2
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 5.0e-43 179.1 99 90.9
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 5.0e-43 179.1 112 79.5
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 7.2e-42 175.3 167 55.1
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 3.9e-40 169.5 97 88.7
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 5.5e-34 149.1 109 63.3
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 6.7e-32 142.1 81 82.7
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.8e-29 134.0 101 71.3
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 4.5e-28 129.4 154 51.9
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 2.2e-27 127.1 92 70.7
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 6.5e-27 125.6 157 48.4
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 2.3e-24 117.1 67 82.1
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 1.1e-21 108.2 120 50.8
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 1.2e-07 61.6 177 32.2


User provided reference genes

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