Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 4.9e-43 177.6 100 100.0
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 7.3e-31 137.1 96 80.2
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 9.9e-28 126.7 89 76.4
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 2.2e-27 125.6 88 75.0
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 6.4e-27 124.0 83 75.9
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 6.4e-27 124.0 81 76.5
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.4e-26 122.1 83 74.7
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 3.2e-26 121.7 81 75.3
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 4.2e-26 121.3 83 74.7
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 7.1e-26 120.6 83 75.9
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 9.3e-26 120.2 83 74.7
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 9.3e-26 120.2 83 71.1
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 9.3e-26 120.2 83 71.1
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 9.3e-26 120.2 83 71.1
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 1.2e-25 119.8 84 71.4
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 1.2e-25 119.8 83 74.7
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 1.6e-25 119.4 81 74.1
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.6e-25 119.4 83 72.3
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 2.1e-25 119.0 81 72.8
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 2.1e-25 119.0 83 73.5
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 2.7e-25 118.6 83 72.3
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 2.7e-25 118.6 84 75.0
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 3.5e-25 118.2 83 71.1
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 4.6e-25 117.9 88 71.6
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 6.0e-25 117.5 83 72.3
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 7.8e-25 117.1 83 72.3
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 7.8e-25 117.1 81 72.8
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 1.0e-24 116.7 84 67.9
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.0e-24 116.7 83 69.9
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 1.0e-24 116.7 83 72.3
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.0e-24 116.7 88 68.2
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 1.0e-24 116.7 81 72.8
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 1.3e-24 116.3 91 65.9
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 1.7e-24 115.9 93 67.7
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 2.3e-24 115.5 83 69.9
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.9e-24 114.8 80 71.2
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 3.9e-24 114.8 83 71.1
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 3.9e-24 114.8 89 68.5
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 5.1e-24 114.4 88 68.2
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 5.1e-24 114.4 81 70.4
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 6.6e-24 114.0 84 70.2
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 6.6e-24 114.0 80 72.5
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 6.6e-24 114.0 83 71.1
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 8.7e-24 113.6 83 69.9
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 8.7e-24 113.6 81 71.6
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 8.7e-24 113.6 83 68.7
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.1e-23 113.2 80 71.2
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.1e-23 113.2 80 71.2
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 1.5e-23 112.8 85 69.4
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.5e-23 112.8 85 67.1
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 2.5e-23 112.1 83 69.9
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 2.5e-23 112.1 83 68.7
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 3.3e-23 111.7 83 68.7
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 3.3e-23 111.7 88 65.9
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 3.3e-23 111.7 88 67.0
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 5.6e-23 110.9 80 68.8
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 5.6e-23 110.9 83 69.9
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 5.6e-23 110.9 81 70.4
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 7.3e-23 110.5 86 67.4
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 7.3e-23 110.5 85 65.9
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 7.3e-23 110.5 82 69.5
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 9.6e-23 110.2 94 61.7
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 9.6e-23 110.2 83 67.5
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 9.6e-23 110.2 83 68.7
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 1.3e-22 109.8 83 67.5
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.6e-22 109.4 91 63.7
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.6e-22 109.4 84 65.5
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 2.1e-22 109.0 83 66.3
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 2.8e-22 108.6 83 68.7
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 4.8e-22 107.8 83 65.1
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 6.2e-22 107.5 81 69.1
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 6.2e-22 107.5 87 63.2
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 6.2e-22 107.5 81 64.2
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 6.2e-22 107.5 81 66.7
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 6.2e-22 107.5 93 63.4
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 8.1e-22 107.1 80 67.5
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 1.4e-21 106.3 86 64.0
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 5.3e-21 104.4 87 64.4
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 6.9e-21 104.0 83 67.5
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 2.0e-20 102.4 83 67.5
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 2.0e-20 102.4 88 61.4
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 2.6e-20 102.1 81 65.4
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 2.6e-20 102.1 87 63.2
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 3.4e-20 101.7 81 61.7
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 3.4e-20 101.7 88 59.1
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 7.6e-20 100.5 87 59.8
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 9.9e-20 100.1 81 63.0
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 9.9e-20 100.1 81 63.0
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 1.7e-19 99.4 75 70.7
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 1.7e-19 99.4 68 73.5
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 2.2e-19 99.0 76 68.4
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 6.4e-19 97.4 67 71.6
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 8.4e-19 97.1 81 59.3
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 8.4e-19 97.1 65 76.9
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 2.4e-18 95.5 81 59.3
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 9.3e-18 93.6 59 79.7
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 1.2e-17 93.2 61 75.4
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 4.6e-17 91.3 65 70.8
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 1.0e-16 90.1 82 56.1
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 1.3e-16 89.7 82 57.3
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 1.3e-16 89.7 82 56.1
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 1.8e-16 89.4 81 56.8
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 3.9e-16 88.2 59 79.7
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 5.1e-16 87.8 80 57.5
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 5.1e-16 87.8 88 51.1
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 3.3e-15 85.1 82 54.9
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 3.3e-15 85.1 88 45.5
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 4.3e-15 84.7 81 53.1
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 4.3e-15 84.7 81 54.3
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 7.4e-15 84.0 82 51.2
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 7.4e-15 84.0 94 45.7
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 1.3e-14 83.2 82 50.0
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 1.6e-14 82.8 82 50.0
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 1.6e-14 82.8 82 50.0
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 1.6e-14 82.8 82 50.0
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 1.6e-14 82.8 82 50.0
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 2.8e-14 82.0 82 50.0
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 2.8e-14 82.0 84 51.2
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 3.7e-14 81.6 82 50.0
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 4.8e-14 81.3 82 50.0
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 4.8e-14 81.3 82 50.0
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 4.8e-14 81.3 82 50.0
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 6.2e-14 80.9 82 50.0
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 6.2e-14 80.9 82 50.0
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 6.2e-14 80.9 82 48.8
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 6.2e-14 80.9 82 50.0
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 8.1e-14 80.5 82 48.8
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 1.8e-13 79.3 82 50.0
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 3.1e-13 78.6 72 58.3
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 4.0e-13 78.2 82 47.6
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 5.3e-13 77.8 82 48.8
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 5.3e-13 77.8 82 48.8
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 5.3e-13 77.8 82 48.8
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 2.0e-12 75.9 81 54.3
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.0e-12 75.9 83 51.8
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 3.4e-12 75.1 58 65.5
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 5.8e-12 74.3 84 48.8
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 7.6e-12 73.9 71 53.5
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 2.2e-11 72.4 71 53.5
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 2.2e-11 72.4 71 53.5
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 2.9e-11 72.0 71 53.5
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 4.2e-10 68.2 58 65.5
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 9.3e-10 67.0 78 41.0
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 3.5e-09 65.1 76 50.0
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.0e-08 63.5 69 46.4
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 1.8e-08 62.8 81 49.4
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 1.9e-07 59.3 82 39.0
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 3.7e-06 55.1 63 46.0
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 8.2e-06 53.9 82 42.7


User provided reference genes

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