Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G081200 Manihot esculenta HOM05D007763 ORTHO05D009537 1.7e-143 513.8 593 100.0
COL.COLO4_36930 Corchorus olitorius HOM05D007763 ORTHO05D009537 6.7e-47 193.0 187 57.8
Thecc.03G093400 Theobroma cacao HOM05D007763 ORTHO05D009537 4.0e-44 183.7 180 56.1
Hma1.2p1_0060F.1_g033520 Hydrangea macrophylla HOM05D007763 ORTHO05D009537 5.8e-43 179.9 190 55.8
Haze_07298 Corylus avellana HOM05D007763 ORTHO05D010304 7.6e-43 179.5 180 54.4
Duzib205G0970 Durio zibethinus HOM05D007763 ORTHO05D009537 2.2e-42 177.9 187 52.4
QL10p017571 Quercus lobata HOM05D007763 ORTHO05D009537 2.9e-42 177.6 156 57.1
Ciclev10024595m.g Citrus clementina HOM05D007763 ORTHO05D009537 3.8e-42 177.2 208 49.5
Actinidia04871 Actinidia chinensis HOM05D007763 ORTHO05D009537 1.1e-41 175.6 194 52.6
Atru.chr12.1670 Acer truncatum HOM05D007763 ORTHO05D009537 1.9e-41 174.9 159 57.9
Lj9C466T13 Lonicera japonica HOM05D007763 ORTHO05D009537 1.9e-41 174.9 192 51.0
Cfa018915 Carpinus fangiana HOM05D007763 ORTHO05D009537 2.5e-41 174.5 181 54.7
Gohir.A03G067600 Gossypium hirsutum HOM05D007763 ORTHO05D009537 2.1e-40 171.4 187 51.9
Dinv38739 Davidia involucrata HOM05D007763 ORTHO05D001128 6.1e-40 169.9 154 59.7
Sc12g0006490 Simmondsia chinensis HOM05D007763 ORTHO05D009537 6.1e-40 169.9 161 59.6
TAR622G0770 Trochodendron aralioides HOM05D007763 ORTHO05D009537 7.9e-40 169.5 182 52.7
GSVIVG01007974001 Vitis vinifera HOM05D007763 ORTHO05D010304 7.9e-40 169.5 193 52.3
Gorai.003G098200 Gossypium raimondii HOM05D007763 ORTHO05D009537 3.0e-39 167.5 190 50.5
Gohir.D03G094100 Gossypium hirsutum HOM05D007763 ORTHO05D009537 1.9e-38 164.9 190 50.0
Nn2g12476 Nelumbo nucifera HOM05D007763 ORTHO05D009537 3.3e-38 164.1 191 50.8
Prupe.5G197300 Prunus persica HOM05D007763 ORTHO05D009537 7.4e-38 162.9 154 55.8
ClCG09G020450 Citrullus lanatus HOM05D007763 ORTHO05D009537 4.8e-37 160.2 176 48.9
RcHm_v2.0_Chr7g0181881 Rosa chinensis HOM05D007763 ORTHO05D009537 6.3e-37 159.8 161 55.9
Migut.I00207 Erythranthe guttata HOM05D007763 ORTHO05D009537 1.1e-36 159.1 196 48.5
FAN13G0255 Fragaria x ananassa HOM05D007763 ORTHO05D009537 1.8e-36 158.3 160 56.2
FAN18G1924 Fragaria x ananassa HOM05D007763 ORTHO05D009537 6.9e-36 156.4 160 55.6
Rhsim08G0152400 Rhododendron simsii HOM05D000001 ORTHO05D010304 9.0e-36 156.0 200 46.0
FvH4_5g14610 Fragaria vesca HOM05D007763 ORTHO05D009537 1.2e-35 155.6 160 55.0
Aqoxy3G00480 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 3.4e-35 154.1 178 48.9
Cc04_g15160 Coffea canephora HOM05D007763 ORTHO05D009537 1.3e-34 152.1 188 47.9
SGA_v2.0_scaffold25G10931 Striga asiatica HOM05D007763 ORTHO05D009537 2.2e-34 151.4 154 51.9
Sed0000161 Sechium edule HOM05D007763 ORTHO05D009537 6.5e-34 149.8 160 50.6
MSTRG.11374 Avicennia marina HOM05D007763 ORTHO05D009537 8.5e-34 149.4 196 46.9
AUR62021645 Chenopodium quinoa HOM05D007763 ORTHO05D009537 1.1e-33 149.1 164 50.0
Lsat_1_v5_gn_5_21540 Lactuca sativa HOM05D007763 ORTHO05D009537 1.9e-33 148.3 180 47.2
PSO017G0499 Papaver somniferum HOM05D007763 ORTHO05D009537 1.9e-33 148.3 187 43.9
CSS0022156 Camellia sinensis var. sinensis HOM05D007763 ORTHO05D009537 4.2e-33 147.1 160 52.5
PGR031G2821 Punica granatum HOM05D007763 ORTHO05D009537 7.2e-33 146.4 190 48.9
MELO3C025502.2 Cucumis melo HOM05D007763 ORTHO05D009537 6.1e-32 143.3 163 47.9
HanXRQChr08g0236691 Helianthus annuus HOM05D007763 ORTHO05D009537 1.8e-31 141.7 181 44.2
TWI60G1313 Tripterygium wilfordii HOM05D007763 ORTHO05D009537 2.3e-31 141.4 124 58.9
Ah.02g113700 Amaranthus hybridus HOM05D007763 ORTHO05D009537 8.8e-31 139.4 159 50.3
THA.LOC104801471 Tarenaya hassleriana HOM05D007763 ORTHO05D009537 2.0e-30 138.3 162 46.3
BcaNung06902 Brassica carinata HOM05D007763 ORTHO05D009537 9.7e-30 136.0 162 47.5
CsaV3_5G025970 Cucumis sativus L. HOM05D007763 ORTHO05D009537 9.7e-30 136.0 163 46.0
Carub.0008s2207 Capsella rubella HOM05D007763 ORTHO05D009537 5.3e-28 130.2 157 45.9
CDE04G3021 Ceratophyllum demersum HOM05D007763 ORTHO05D000003 5.3e-28 130.2 157 43.9
BraA09t36381Z Brassica rapa HOM05D007763 ORTHO05D009537 4.5e-27 127.1 157 46.5
CARHR275160 Cardamine hirsuta HOM05D007763 ORTHO05D009537 4.5e-27 127.1 157 44.6
BcaC04g23450 Brassica carinata HOM05D007763 ORTHO05D009537 1.7e-26 125.2 157 45.9
C09p08190 Brassica napus HOM05D007763 ORTHO05D009537 1.7e-26 125.2 157 45.9
BolC9t53731H Brassica oleracea HOM05D007763 ORTHO05D009537 1.7e-26 125.2 157 45.9
AT5G61400 Arabidopsis thaliana HOM05D007763 ORTHO05D009537 2.9e-26 124.4 195 40.5
EL10Ac5g11053 Beta vulgaris HOM05D014602 ORTHO05D009537 8.5e-26 122.9 101 57.4
Thhalv10005336m.g Eutrema salsugineum HOM05D007763 ORTHO05D009537 1.1e-25 122.5 163 45.4
AL8G38070 Arabidopsis lyrata HOM05D007763 ORTHO05D009537 1.9e-25 121.7 167 41.9
Oeu052450.2 Olea europaea HOM05D007763 ORTHO05D009537 9.4e-25 119.4 102 56.9
Aa31LG11G2020 Aethionema arabicum HOM05D007763 ORTHO05D009537 2.7e-24 117.9 155 43.2
Sopen06g027000 Solanum pennellii HOM05D007763 ORTHO05D009537 6.7e-23 113.2 163 42.9
Solyc06g069700.4 Solanum lycopersicum HOM05D007763 ORTHO05D009537 8.8e-23 112.8 163 42.3
vmacro17568 Vaccinium macrocarpon HOM05D007763 ORTHO05D009537 8.8e-23 112.8 134 47.0
AUR62008445 Chenopodium quinoa HOM05D007763 ORTHO05D009537 2.6e-22 111.3 163 42.3
DCAR_002300 Daucus carota HOM05D007763 ORTHO05D009537 4.4e-22 110.5 105 54.3
Aqoxy2G01348 Aquilegia oxysepala HOM05D007763 ORTHO05D009537 1.1e-20 105.9 96 52.1
Phvul.009G185566 Phaseolus vulgaris HOM05D007763 ORTHO05D009537 3.1e-20 104.4 116 47.4
LjContig00102g0005353 Lotus japonicus HOM05D000001 ORTHO05D010304 5.3e-20 103.6 104 51.9
ATR1127G168 Amborella trichopoda HOM05D007763 ORTHO05D009537 2.2e-18 98.2 169 38.5
CAN.G587.9 Capsicum annuum HOM05D007763 ORTHO05D009537 7.2e-17 93.2 140 42.9
Atru.chr12.1664 Acer truncatum HOM05D007763 ORTHO05D009537 1.7e-13 82.0 60 68.3
BcaC04g23452 Brassica carinata HOM05D007763 ORTHO05D009537 2.2e-13 81.6 96 44.8
MBI02_g14230_MAGBIO Magnolia biondii HOM05D007763 ORTHO05D011706 2.8e-13 81.3 185 33.5
Peaxi162Scf00013g00410 Petunia axillaris HOM05D007763 ORTHO05D009537 3.7e-13 80.9 95 47.4
TPR.G11825 Trifolium pratense HOM05D007763 ORTHO05D009537 4.8e-13 80.5 102 43.1
arahy.Tifrunner.gnm1.ann1.NWYI6Z Arachis hypogaea HOM05D000001 ORTHO05D010304 1.2e-11 75.9 104 42.3
arahy.Tifrunner.gnm1.ann1.PFL66H Arachis hypogaea HOM05D007763 ORTHO05D009537 1.2e-11 75.9 104 41.3
Lalb_Chr08g0235511 Lupinus albus HOM05D007763 ORTHO05D009537 2.6e-11 74.7 88 46.6
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 5.9e-11 73.6 178 29.2
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 7.7e-11 73.2 146 30.1
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 3.8e-10 70.9 159 34.6
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 5.0e-10 70.5 144 33.3
Hund02629 Selenicereus undatus HOM05D007763 ORTHO05D019789 5.0e-10 70.5 50 64.0
Zm00001eb312410 Zea mays HOM05D007763 ORTHO05D009537 5.0e-10 70.5 121 36.4
Ca_14664_v3 Cicer arietinum L. HOM05D007763 ORTHO05D009537 6.5e-10 70.1 136 34.6
TPR.G27557 Trifolium pratense HOM05D007763 ORTHO05D009537 6.5e-10 70.1 107 37.4
Atru.chr12.1659 Acer truncatum HOM05D007763 ORTHO05D009537 1.1e-09 69.3 62 59.7
Gorai.009G205400 Gossypium raimondii HOM05D007639 ORTHO05D009509 1.5e-09 68.9 147 34.0
ECA246G2275 Erigeron canadensis HOM05D007763 ORTHO05D009537 1.9e-09 68.6 61 49.2
Gohir.D05G200100 Gossypium hirsutum HOM05D007639 ORTHO05D009509 1.9e-09 68.6 147 34.0
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 2.5e-09 68.2 145 33.8
Sed0007352 Sechium edule HOM05D007639 ORTHO05D009509 4.2e-09 67.4 147 32.7
Lalb_Chr24g0394951 Lupinus albus HOM05D007358 ORTHO05D009117 5.5e-09 67.0 138 31.9
Dinv39377 Davidia involucrata HOM05D007639 ORTHO05D009509 9.4e-09 66.2 158 30.4
Psat5g201000 Pisum sativum HOM05D007763 ORTHO05D009537 9.4e-09 66.2 99 61.6
Duzib093G1018 Durio zibethinus HOM05D007639 ORTHO05D009509 2.7e-08 64.7 147 34.0
CsaV3_3G044860 Cucumis sativus L. HOM05D007639 ORTHO05D009509 3.6e-08 64.3 147 32.0
Migut.L00762 Erythranthe guttata HOM05D007639 ORTHO05D009509 4.7e-08 63.9 175 29.1
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 4.7e-08 63.9 154 27.9
Potri.014G040200 Populus trichocarpa HOM05D007639 ORTHO05D009509 4.7e-08 63.9 144 31.9
RcHm_v2.0_Chr6g0300361 Rosa chinensis HOM05D007639 ORTHO05D009509 4.7e-08 63.9 145 30.3
MELO3C003888.2 Cucumis melo HOM05D007639 ORTHO05D009509 6.1e-08 63.5 147 31.3
Medtr3g037490 Medicago truncatula HOM05D007763 ORTHO05D009537 8.0e-08 63.2 45 57.8
Phvul.004G009900 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.0e-07 62.8 154 27.9
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 1.4e-07 62.4 146 28.8
CSS0026781 Camellia sinensis var. sinensis HOM05D007639 ORTHO05D009509 1.8e-07 62.0 136 29.4
Nitab4.5_0004286g0010 Nicotiana tabacum HOM05D007763 ORTHO05D009537 1.8e-07 62.0 50 52.0
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 2.3e-07 61.6 162 29.6
Prupe.1G585600 Prunus persica HOM05D007639 ORTHO05D009509 4.0e-07 60.8 139 31.7
Sp1g17190 Schrenkiella parvula HOM05D007639 ORTHO05D009509 4.0e-07 60.8 162 31.5
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 4.0e-07 60.8 146 31.5
Hma1.2p1_0013F.1_g008830 Hydrangea macrophylla HOM05D007358 ORTHO05D009117 5.2e-07 60.5 138 30.4
Psat1g055280 Pisum sativum HOM05D007358 ORTHO05D009117 5.2e-07 60.5 155 27.1
ClCG09G019220 Citrullus lanatus HOM05D007358 ORTHO05D009117 6.8e-07 60.1 125 32.8
FvH4_2g40380 Fragaria vesca HOM05D007639 ORTHO05D009509 6.8e-07 60.1 139 29.5
Os09g0417500 Oryza sativa ssp. japonica HOM05D007763 ORTHO05D009537 6.8e-07 60.1 59 49.2
ECA246G4229 Erigeron canadensis HOM05D000587 ORTHO05D009114 8.8e-07 59.7 142 32.4
Oeu009601.2 Olea europaea HOM05D007639 ORTHO05D009509 8.8e-07 59.7 186 26.9
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 8.8e-07 59.7 179 25.7
CSS0043455 Camellia sinensis var. sinensis HOM05D007639 ORTHO05D009509 1.2e-06 59.3 159 28.9
CsaV3_5G027190 Cucumis sativus L. HOM05D007358 ORTHO05D009117 1.2e-06 59.3 125 32.8
Peaxi162Scf00057g00149 Petunia axillaris HOM05D000909 ORTHO05D009509 1.2e-06 59.3 143 32.2
Sabra14G0029300 Salix brachista HOM05D007639 ORTHO05D009509 1.2e-06 59.3 144 30.6
MBI16_g10987_MAGBIO Magnolia biondii HOM05D007639 ORTHO05D009509 1.5e-06 58.9 163 28.8
Phvul.004G009341 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.5e-06 58.9 179 25.7
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 2.6e-06 58.2 155 26.5
Lj6g0022088 Lotus japonicus HOM05D007639 ORTHO05D009509 2.6e-06 58.2 169 30.2
Nitab4.5_0003021g0070 Nicotiana tabacum HOM05D007763 ORTHO05D009537 2.6e-06 58.2 48 47.9
THA.LOC104813851 Tarenaya hassleriana HOM05D007639 ORTHO05D009509 2.6e-06 58.2 152 27.6
ATR0733G078 Amborella trichopoda HOM05D007639 ORTHO05D009509 3.4e-06 57.8 136 28.7
SEGI_31001 Sequoiadendron giganteum HOM05D007358 ORTHO05D009117 3.4e-06 57.8 165 25.5
Ah.04g165440 Amaranthus hybridus HOM05D007639 ORTHO05D009509 4.4e-06 57.4 165 26.7
Manes.05G164100 Manihot esculenta HOM05D007639 ORTHO05D009509 5.7e-06 57.0 158 27.8
TPR.G14066 Trifolium pratense HOM05D007358 ORTHO05D009117 5.7e-06 57.0 155 27.7
Aqoxy6G01002 Aquilegia oxysepala HOM05D007639 ORTHO05D009509 7.5e-06 56.6 144 34.7


User provided reference genes

Program Settings