Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 0.0e+00 1401.7 692 100.0
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 2.5e-287 991.9 687 70.2
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 5.8e-276 954.1 701 67.5
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 2.9e-275 951.8 699 66.4
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 5.1e-272 941.0 684 66.1
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 4.0e-269 931.4 682 64.7
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.5e-268 929.5 678 64.7
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 6.4e-267 924.1 686 64.0
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 8.4e-267 923.7 678 64.7
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 3.0e-264 915.2 695 64.2
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 1.1e-263 913.3 678 64.0
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 3.4e-260 901.7 678 63.4
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 2.9e-259 898.7 705 62.7
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 1.4e-258 896.3 697 64.1
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 1.9e-258 896.0 691 63.8
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 3.2e-258 895.2 654 65.6
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 3.6e-254 881.7 636 65.1
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 1.1e-253 880.2 694 62.1
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 3.1e-253 878.6 694 61.5
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 6.4e-251 870.9 691 61.4
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 3.5e-249 865.1 700 60.9
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 9.6e-247 857.1 707 60.4
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 4.5e-244 848.2 692 60.1
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 6.0e-241 837.8 707 59.1
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 3.9e-240 835.1 679 59.5
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 3.8e-235 818.5 680 59.0
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 4.9e-235 818.1 696 58.0
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 5.5e-234 814.7 700 57.3
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 3.9e-232 808.5 691 58.5
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.5e-231 806.6 679 58.0
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 2.8e-230 802.4 689 57.6
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 1.1e-229 800.4 712 56.0
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 5.3e-229 798.1 697 57.2
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 6.9e-229 797.7 697 57.7
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 9.0e-229 797.3 691 56.9
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.0e-228 796.2 692 59.0
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 2.0e-228 796.2 687 56.9
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 4.5e-228 795.0 685 56.1
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 3.2e-226 788.9 845 50.7
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 1.3e-224 783.5 685 57.7
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.8e-224 783.1 687 58.7
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.1e-223 780.4 734 53.7
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 2.8e-222 775.8 715 55.9
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 2.4e-221 772.7 693 56.6
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 3.1e-221 772.3 717 55.6
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 5.3e-221 771.5 691 54.8
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 1.7e-219 766.5 691 55.0
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 6.5e-219 764.6 717 55.1
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 3.2e-218 762.3 708 55.5
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 1.5e-215 753.4 691 53.7
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 2.5e-215 752.7 713 52.9
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 5.7e-215 751.5 681 55.9
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 7.4e-215 751.1 689 53.8
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 2.2e-214 749.6 695 53.5
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 2.2e-214 749.6 701 53.2
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 2.8e-214 749.2 709 54.3
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 1.8e-213 746.5 696 53.2
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 3.1e-213 745.7 696 53.3
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 3.1e-213 745.7 697 53.2
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 5.3e-213 745.0 702 53.8
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 2.6e-212 742.7 696 53.7
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 3.8e-211 738.8 700 52.0
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 2.5e-210 736.1 699 51.4
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 7.2e-210 734.6 691 54.3
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 2.7e-209 732.6 758 49.7
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 5.1e-208 728.4 727 50.8
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 2.6e-207 726.1 686 53.2
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 4.4e-207 725.3 640 56.2
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 5.7e-207 724.9 699 52.8
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 3.5e-204 715.7 700 51.9
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 2.5e-202 709.5 690 53.2
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 4.0e-200 702.2 705 50.9
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 8.8e-200 701.0 701 50.9
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 2.4e-197 693.0 650 52.3
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 5.3e-197 691.8 701 50.6
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 7.7e-196 688.0 596 57.2
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 3.7e-190 669.1 694 49.0
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.0e-184 651.0 697 49.9
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 1.2e-183 647.5 710 48.0
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 2.4e-181 639.8 726 47.7
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 5.4e-181 638.6 686 48.5
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 1.9e-178 630.2 659 50.2
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 4.3e-178 629.0 748 45.6
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 1.5e-175 620.5 682 47.5
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 2.1e-161 573.5 434 64.5
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 2.2e-158 563.5 588 52.9
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 1.0e-155 554.7 682 45.7
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 3.1e-152 543.1 584 48.5
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 5.8e-151 538.9 470 55.5
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 1.3e-147 527.7 470 56.8
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 2.5e-146 523.5 377 65.5
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.8e-144 517.3 685 42.8
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 8.4e-142 508.4 458 56.1
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 7.1e-133 478.8 642 40.7
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 4.5e-127 459.5 480 53.3
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 2.6e-119 433.7 630 39.2
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 1.1e-114 418.3 605 38.7
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.0e-110 405.2 540 42.0
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 1.8e-99 367.9 260 63.1
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 5.9e-87 326.2 319 53.0
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.1e-84 317.8 346 46.2
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 4.1e-80 303.5 265 56.2
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 6.1e-76 289.7 270 56.3
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 6.5e-70 269.6 289 48.8
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 1.4e-67 261.9 222 56.3
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 1.5e-61 241.9 263 47.5
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 5.6e-61 240.0 197 60.9
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.7e-58 229.9 206 55.8
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 9.8e-58 229.2 251 45.8
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 4.9e-57 226.9 514 33.1
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.3e-54 218.0 330 37.9
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 2.3e-46 191.4 236 43.2
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 1.4e-43 182.2 159 55.3
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 1.2e-42 179.1 156 55.8
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.0e-38 166.0 292 34.6
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.6e-36 158.7 329 32.8
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.2e-36 156.8 325 31.7
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.7e-33 148.7 187 44.4
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 2.9e-33 147.9 168 45.2
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 3.8e-33 147.5 130 56.2
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 3.2e-32 144.4 88 71.6
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.6e-31 142.1 191 38.7
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.6e-30 136.7 319 31.0
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 1.9e-29 135.2 143 44.1
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 3.3e-29 134.4 148 50.0
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.3e-29 134.4 321 31.8
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 1.6e-28 132.1 479 26.5
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 9.9e-26 122.9 435 24.4
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.4e-25 120.2 267 31.8
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 5.4e-24 117.1 419 28.4
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.8e-23 113.2 157 42.7
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.3e-22 112.5 212 34.0
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.1e-19 102.8 87 55.2
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 2.4e-19 101.7 119 47.9
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.6e-18 98.2 242 30.2
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.4e-18 97.8 87 51.7
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.5e-18 97.4 87 52.9
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 1.3e-17 95.9 76 56.6
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.3e-17 95.9 141 39.0
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.8e-17 94.4 93 50.5
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 3.2e-16 91.3 137 40.1
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 4.2e-16 90.9 183 30.6
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.6e-15 89.0 137 40.1
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 4.6e-15 87.4 93 51.6
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 7.9e-15 86.7 62 62.9
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 1.0e-14 86.3 78 51.3
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 1.8e-14 85.5 57 70.2
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.3e-13 80.9 171 34.5
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 1.6e-12 79.0 63 63.5
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 4.8e-12 77.4 57 66.7
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.0e-11 74.3 168 29.8
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 1.3e-09 69.3 50 62.0
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.9e-09 68.2 87 41.4
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 7.1e-08 63.5 45 55.6
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.1e-07 62.0 47 57.4
CSS0033804 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.7e-07 61.6 38 60.5
MBI05_g10671_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 1.0e-06 59.7 34 73.5
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.3e-06 59.3 41 63.4
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 2.3e-06 58.5 45 62.2
Gohir.D04G138300 Gossypium hirsutum HOM05D001714 ORTHO05D001932 8.7e-06 56.6 170 29.4
Gorai.012G123200 Gossypium raimondii HOM05D001714 ORTHO05D001932 8.7e-06 56.6 170 29.4


User provided reference genes

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