Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 1.7e-45 185.7 96 100.0
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 2.3e-37 158.7 96 86.5
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 2.8e-27 125.2 97 67.0
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 1.1e-26 123.2 96 64.6
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 8.9e-26 120.2 96 62.5
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 2.2e-24 115.5 96 62.5
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 2.2e-24 115.5 96 62.5
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 2.2e-24 115.5 96 62.5
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 3.7e-24 114.8 96 60.4
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 8.3e-24 113.6 93 64.5
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 7.1e-23 110.5 96 58.3
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.2e-22 109.8 96 56.2
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 6.0e-22 107.5 96 59.4
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.3e-21 106.3 97 54.6
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 1.3e-21 106.3 97 60.8
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.7e-21 105.9 97 55.7
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.7e-21 105.9 97 55.7
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 1.7e-21 105.9 96 52.1
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 1.7e-21 105.9 88 54.5
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 2.3e-21 105.5 87 65.5
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 3.0e-21 105.1 96 56.2
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.0e-21 105.1 97 54.6
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 3.0e-21 105.1 89 58.4
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 3.9e-21 104.8 96 56.2
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 3.9e-21 104.8 95 58.9
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 3.3e-20 101.7 93 55.9
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 4.3e-20 101.3 96 58.3
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 7.3e-20 100.5 90 58.9
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 2.0e-17 92.4 81 58.0
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 3.4e-17 91.7 96 52.1
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 5.8e-17 90.9 97 46.4
Lalb_Chr12g0196861 Lupinus albus HOM05D007096 ORTHO05D008288 1.3e-16 89.7 98 54.1
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.3e-16 89.7 88 56.8
Sed0025401 Sechium edule HOM05D007096 ORTHO05D008288 2.9e-16 88.6 97 46.4
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 2.9e-16 88.6 95 46.3
Sed0019012 Sechium edule HOM05D007096 ORTHO05D008288 8.3e-16 87.0 105 45.7
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 1.4e-15 86.3 88 50.0
Glyma.05G026700 Glycine max HOM05D007096 ORTHO05D008288 1.9e-15 85.9 84 53.6
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 3.2e-15 85.1 97 44.3
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 3.2e-15 85.1 87 56.3
MELO3C001984.2 Cucumis melo HOM05D007096 ORTHO05D008288 4.1e-15 84.7 87 44.8
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 5.4e-15 84.3 89 50.6
FAN04G0033 Fragaria x ananassa HOM05D007096 ORTHO05D008288 2.1e-14 82.4 90 48.9
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 1.0e-13 80.1 87 49.4
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.3e-13 79.0 91 50.5
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.3e-13 79.0 91 50.5
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 3.0e-13 78.6 95 48.4
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 3.0e-13 78.6 90 52.2
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 8.6e-13 77.0 92 46.7
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 8.6e-13 77.0 92 48.9
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 8.6e-13 77.0 71 56.3
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 8.6e-13 77.0 85 48.2
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 1.9e-12 75.9 96 44.8
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 4.3e-12 74.7 93 47.3
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 5.6e-12 74.3 94 45.7
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 9.6e-12 73.6 94 43.6
Sed0013252 Sechium edule HOM05D007096 ORTHO05D008288 9.6e-12 73.6 96 42.7
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.6e-11 72.8 87 48.3
Sed0011431 Sechium edule HOM05D007096 ORTHO05D008288 1.6e-11 72.8 96 46.9
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 1.6e-11 72.8 88 46.6
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 2.8e-11 72.0 90 44.4
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 2.8e-11 72.0 97 48.5
Medtr3g037730 Medicago truncatula HOM05D007096 ORTHO05D008288 4.7e-11 71.2 94 46.8
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 1.1e-10 70.1 94 43.6
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 1.4e-10 69.7 88 42.0
FvH4_5g14931 Fragaria vesca HOM05D007096 ORTHO05D008288 1.8e-10 69.3 86 44.2
SalBow7G4253 Salvia bowleyana HOM05D007096 ORTHO05D008288 1.8e-10 69.3 88 46.6
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 5.2e-10 67.8 87 42.5
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 6.8e-10 67.4 92 41.3
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 8.9e-10 67.0 79 49.4
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 1.5e-09 66.2 92 44.6
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 1.5e-09 66.2 87 44.8
Migut.D01817 Erythranthe guttata HOM05D007096 ORTHO05D008288 2.0e-09 65.9 88 42.0
Lsat_1_v5_gn_4_108521 Lactuca sativa HOM05D007096 ORTHO05D008288 2.6e-09 65.5 87 44.8
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 2.6e-09 65.5 94 41.5
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 5.8e-09 64.3 87 40.2
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 5.8e-09 64.3 92 43.5
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.6e-09 63.9 87 40.2
Peaxi162Scf00911g00042 Petunia axillaris HOM05D007096 ORTHO05D008288 1.7e-08 62.8 87 43.7
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.9e-08 62.0 86 43.0
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.9e-08 62.0 86 43.0
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 4.9e-08 61.2 103 37.9
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 6.4e-08 60.8 95 41.1
Eucgr.B03446 Eucalyptus grandis HOM05D007096 ORTHO05D008288 6.4e-08 60.8 97 44.3
Migut.I00178 Erythranthe guttata HOM05D007096 ORTHO05D008288 8.4e-08 60.5 91 40.7
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.1e-07 60.1 86 41.9
MELO3C017172.2 Cucumis melo HOM05D007096 ORTHO05D008288 1.9e-07 59.3 99 40.4
Oeu054876.1 Olea europaea HOM05D007096 ORTHO05D008288 2.4e-07 58.9 92 40.2
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 4.2e-07 58.2 94 38.3
CsaV3_1G002320 Cucumis sativus L. HOM05D007096 ORTHO05D008288 4.2e-07 58.2 87 43.7
Lalb_Chr10g0098271 Lupinus albus HOM05D015099 ORTHO05D008288 4.2e-07 58.2 96 39.6
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 5.4e-07 57.8 89 40.4
Gohir.A11G031151 Gossypium hirsutum HOM05D007096 ORTHO05D008288 9.3e-07 57.0 94 39.4
Lalb_Chr04g0256051 Lupinus albus HOM05D015099 ORTHO05D008288 9.3e-07 57.0 87 39.1
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.6e-06 56.2 89 38.2
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.7e-06 55.5 89 37.1
Migut.L01293 Erythranthe guttata HOM05D007096 ORTHO05D008288 3.5e-06 55.1 90 41.1
BcaC05g25785 Brassica carinata HOM05D011140 ORTHO05D013248 6.0e-06 54.3 101 39.6
BcaC07g38953 Brassica carinata HOM05D011140 ORTHO05D013248 6.0e-06 54.3 96 41.7
C05p17250 Brassica napus HOM05D011140 ORTHO05D013248 6.0e-06 54.3 101 39.6
C08p18990 Brassica napus HOM05D011140 ORTHO05D013248 6.0e-06 54.3 96 41.7
BolC5t30425H Brassica oleracea HOM05D011140 ORTHO05D013248 6.0e-06 54.3 101 39.6
BolC8t49523H Brassica oleracea HOM05D011140 ORTHO05D013248 6.0e-06 54.3 96 41.7
BraA06t24620Z Brassica rapa HOM05D011140 ORTHO05D013248 6.0e-06 54.3 101 39.6
Gohir.D11G034500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 6.0e-06 54.3 95 40.0
BcaB03g14477 Brassica carinata HOM05D011140 ORTHO05D013248 7.8e-06 53.9 106 39.6


User provided reference genes

Program Settings