Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 5.0e-41 170.6 84 100.0
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 8.6e-33 143.3 85 83.5
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 1.2e-23 112.8 84 69.0
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 1.5e-21 105.9 82 68.3
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 5.8e-21 104.0 85 57.6
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 7.5e-21 103.6 77 64.9
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 9.9e-21 103.2 82 67.1
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 3.2e-19 98.2 83 61.4
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.1e-19 97.8 85 58.8
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 4.1e-19 97.8 81 63.0
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 4.1e-19 97.8 85 58.8
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 5.4e-19 97.4 84 59.5
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 7.1e-19 97.1 75 65.3
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 9.2e-19 96.7 85 61.2
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.2e-18 96.3 85 61.2
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 1.6e-18 95.9 89 55.1
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 2.7e-18 95.1 86 58.1
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.6e-18 94.4 85 60.0
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.6e-18 94.4 85 60.0
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 7.8e-18 93.6 85 60.0
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 7.8e-18 93.6 83 61.4
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 1.0e-17 93.2 84 57.1
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 1.3e-17 92.8 83 55.4
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 1.3e-17 92.8 84 54.8
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.3e-17 92.8 84 59.5
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.7e-17 92.4 85 58.8
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.3e-17 92.0 85 58.8
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 2.3e-17 92.0 82 61.0
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 3.9e-17 91.3 83 55.4
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 3.9e-17 91.3 83 56.6
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 5.1e-17 90.9 77 59.7
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 5.1e-17 90.9 85 57.6
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 6.6e-17 90.5 85 57.6
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 6.6e-17 90.5 85 57.6
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 6.6e-17 90.5 82 58.5
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.1e-16 89.7 85 55.3
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 1.1e-16 89.7 85 55.3
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 1.5e-16 89.4 84 56.0
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 1.5e-16 89.4 82 54.9
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 1.5e-16 89.4 82 54.9
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 1.9e-16 89.0 87 58.6
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 2.5e-16 88.6 84 61.9
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 2.5e-16 88.6 91 53.8
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 2.5e-16 88.6 88 55.7
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 2.5e-16 88.6 85 56.5
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 3.3e-16 88.2 82 54.9
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 7.3e-16 87.0 85 57.6
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 9.5e-16 86.7 84 53.6
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.2e-15 86.3 85 54.1
MD14G1187200 Malus domestica HOM05D003533 ORTHO05D004009 1.2e-15 86.3 82 58.5
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 1.6e-15 85.9 84 54.8
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 1.6e-15 85.9 84 54.8
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 2.1e-15 85.5 85 58.8
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 2.1e-15 85.5 80 58.8
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 2.1e-15 85.5 80 55.0
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 3.6e-15 84.7 84 51.2
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 3.6e-15 84.7 73 58.9
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 3.6e-15 84.7 84 53.6
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 1.1e-14 83.2 91 52.7
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 1.1e-14 83.2 76 56.6
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 1.1e-14 83.2 82 54.9
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 1.4e-14 82.8 79 54.4
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.4e-14 82.8 70 60.0
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.4e-14 82.8 91 50.5
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 2.4e-14 82.0 90 51.1
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 2.4e-14 82.0 92 50.0
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 2.4e-14 82.0 72 56.9
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 2.4e-14 82.0 72 56.9
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 2.4e-14 82.0 82 51.2
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.4e-14 82.0 76 59.2
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 2.4e-14 82.0 79 54.4
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 2.4e-14 82.0 84 52.4
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 3.1e-14 81.6 91 50.5
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 4.0e-14 81.3 76 57.9
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 4.0e-14 81.3 84 57.1
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 6.8e-14 80.5 84 48.8
Potri.015G070700 Populus trichocarpa HOM05D003533 ORTHO05D004009 6.8e-14 80.5 85 54.1
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 8.9e-14 80.1 74 55.4
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 1.2e-13 79.7 84 52.4
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 1.2e-13 79.7 84 53.6
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 1.2e-13 79.7 82 52.4
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 1.5e-13 79.3 78 52.6
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 2.0e-13 79.0 83 50.6
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 2.0e-13 79.0 79 53.2
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 2.0e-13 79.0 80 53.8
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 2.6e-13 78.6 76 55.3
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 3.4e-13 78.2 88 52.3
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 4.4e-13 77.8 81 50.6
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 4.4e-13 77.8 90 47.8
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 5.8e-13 77.4 76 53.9
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 7.6e-13 77.0 91 49.5
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 7.6e-13 77.0 91 49.5
Prupe.1G261100 Prunus persica HOM05D003533 ORTHO05D004009 7.6e-13 77.0 81 54.3
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 9.9e-13 76.6 92 46.7
Cfa019066 Carpinus fangiana HOM05D003533 ORTHO05D004009 9.9e-13 76.6 84 52.4
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 9.9e-13 76.6 94 48.9
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 1.3e-12 76.3 75 54.7
Cfa009093 Carpinus fangiana HOM05D003533 ORTHO05D004009 1.3e-12 76.3 90 46.7
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.3e-12 76.3 92 47.8
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.7e-12 75.9 87 55.2
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 1.7e-12 75.9 73 54.8
Prupe.5G179600 Prunus persica HOM05D003533 ORTHO05D004009 2.9e-12 75.1 83 56.6
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 3.8e-12 74.7 88 48.9
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 3.8e-12 74.7 86 50.0
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 3.8e-12 74.7 92 46.7
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 4.9e-12 74.3 78 51.3
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 4.9e-12 74.3 79 49.4
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 6.4e-12 73.9 80 48.8
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 6.4e-12 73.9 83 49.4
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 6.4e-12 73.9 84 47.6
Sabra15G0095000 Salix brachista HOM05D003533 ORTHO05D004009 8.4e-12 73.6 84 47.6
Sabra15G0095900 Salix brachista HOM05D003533 ORTHO05D004009 8.4e-12 73.6 84 47.6
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 1.1e-11 73.2 78 50.0
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 1.4e-11 72.8 81 49.4
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 1.4e-11 72.8 84 47.6
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 1.9e-11 72.4 84 50.0
CsaV3_1G001820 Cucumis sativus L. HOM05D003533 ORTHO05D004009 2.4e-11 72.0 81 49.4
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 2.4e-11 72.0 79 46.8
Potri.012G075800 Populus trichocarpa HOM05D003533 ORTHO05D004009 2.4e-11 72.0 84 51.2
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 3.2e-11 71.6 83 45.8
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 3.2e-11 71.6 83 48.2
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 3.2e-11 71.6 85 47.1
Eucgr.C02738 Eucalyptus grandis HOM05D003533 ORTHO05D004009 4.1e-11 71.2 86 47.7
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 4.1e-11 71.2 88 43.2
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 5.4e-11 70.9 77 50.6
Actinidia19080 Actinidia chinensis HOM05D003533 ORTHO05D004009 7.1e-11 70.5 76 55.3
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 7.1e-11 70.5 83 44.6
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 7.1e-11 70.5 77 49.4
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 7.1e-11 70.5 75 46.7
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 9.2e-11 70.1 69 53.6
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 9.2e-11 70.1 84 44.0
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 9.2e-11 70.1 84 44.0
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 1.6e-10 69.3 83 51.8
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 2.7e-10 68.6 77 49.4
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 2.7e-10 68.6 76 51.3
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 2.7e-10 68.6 74 51.4
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.7e-10 68.6 71 52.1
Sabra12G0053900 Salix brachista HOM05D003533 ORTHO05D004009 3.5e-10 68.2 84 47.6
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 4.6e-10 67.8 79 48.1
Oeu060842.1 Olea europaea HOM05D003533 ORTHO05D004009 6.0e-10 67.4 77 48.1
Actinidia34961 Actinidia chinensis HOM05D003533 ORTHO05D004009 7.8e-10 67.0 76 50.0
Aa31LG7G3800 Aethionema arabicum HOM05D006783 ORTHO05D008330 7.8e-10 67.0 70 50.0
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 7.8e-10 67.0 79 45.6
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.0e-09 66.6 85 45.9
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 1.0e-09 66.6 76 46.1
BcaC05g25801 Brassica carinata HOM05D003533 ORTHO05D004009 1.3e-09 66.2 91 45.1
BcaC05g25802 Brassica carinata HOM05D003533 ORTHO05D004009 1.3e-09 66.2 91 45.1
C05p17410 Brassica napus HOM05D003533 ORTHO05D004009 1.3e-09 66.2 91 45.1
BolC5t30441H Brassica oleracea HOM05D003533 ORTHO05D004009 1.3e-09 66.2 91 45.1
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 1.3e-09 66.2 78 47.4
Rhsim08G0167800 Rhododendron simsii HOM05D003533 ORTHO05D004009 5.1e-09 64.3 54 61.1
Carub.0001s1865 Capsella rubella HOM05D003533 ORTHO05D004009 1.5e-08 62.8 84 41.7
Atru.chr11.1939 Acer truncatum HOM05D003533 ORTHO05D004009 1.9e-08 62.4 72 47.2
Rhsim08G0167600 Rhododendron simsii HOM05D003533 ORTHO05D004009 1.9e-08 62.4 54 59.3
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 2.5e-08 62.0 84 45.2
Ciclev10033215m.g Citrus clementina HOM05D003533 ORTHO05D004009 3.3e-08 61.6 82 48.8
Peaxi162Scf00017g00254 Petunia axillaris HOM05D003533 ORTHO05D004009 3.3e-08 61.6 64 60.9
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 4.3e-08 61.2 84 44.0
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 4.3e-08 61.2 84 44.0
CDE07G1253 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 4.3e-08 61.2 73 50.7
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 4.3e-08 61.2 81 45.7
HanXRQChr09g0271891 Helianthus annuus HOM05D003533 ORTHO05D004009 7.3e-08 60.5 72 48.6
Os06g0239200 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 7.3e-08 60.5 75 44.0
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 9.6e-08 60.1 75 45.3
SalBow5G4118 Salvia bowleyana HOM05D003533 ORTHO05D004009 9.6e-08 60.1 54 57.4
ClCG06G016690 Citrullus lanatus HOM05D003533 ORTHO05D004009 1.6e-07 59.3 61 55.7
THA.LOC109116673 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 8.1e-07 57.0 75 41.3
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 1.4e-06 56.2 74 40.5
THA.LOC104821473 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 1.4e-06 56.2 77 40.3
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.8e-06 55.8 76 43.4
THA.LOC109116474 Tarenaya hassleriana HOM05D003533 ORTHO05D004009 1.8e-06 55.8 79 43.0
Sed0014302 Sechium edule HOM05D003533 ORTHO05D004009 2.4e-06 55.5 89 43.8
HanXRQChr04g0107311 Helianthus annuus HOM05D003533 ORTHO05D004009 3.1e-06 55.1 73 43.8
QL03p067192 Quercus lobata HOM05D003533 ORTHO05D337925 3.1e-06 55.1 82 42.7
ATR0824G240 Amborella trichopoda HOM05D003533 ORTHO05D004009 4.0e-06 54.7 83 37.3
vmacro16586 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 5.2e-06 54.3 40 65.0
Actinidia34960 Actinidia chinensis HOM05D003533 ORTHO05D004009 6.9e-06 53.9 48 56.2


User provided reference genes

Program Settings