Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G069600 Manihot esculenta HOM05D006272 ORTHO05D007989 1.9e-127 459.1 226 100.0
Haze_07447 Corylus avellana HOM05D006272 ORTHO05D007989 3.9e-88 328.6 228 73.7
FvH4_5g16490 Fragaria vesca HOM05D006272 ORTHO05D007989 3.3e-87 325.5 228 71.9
QL10p013391 Quercus lobata HOM05D006272 ORTHO05D007989 2.1e-86 322.8 225 70.7
Ciclev10022132m.g Citrus clementina HOM05D006272 ORTHO05D007989 4.7e-86 321.6 227 69.6
CiPaw.12G023800 Carya illinoinensis HOM05D006272 ORTHO05D007989 4.0e-85 318.5 226 69.9
RcHm_v2.0_Chr7g0179601 Rosa chinensis HOM05D006272 ORTHO05D007989 5.2e-85 318.2 226 71.2
Gohir.D03G150700 Gossypium hirsutum HOM05D006272 ORTHO05D007989 2.6e-84 315.8 232 70.3
Duzib205G0574 Durio zibethinus HOM05D006272 ORTHO05D007989 4.4e-84 315.1 233 69.5
FAN18G3972 Fragaria x ananassa HOM05D006272 ORTHO05D007989 9.9e-84 313.9 247 66.4
Prupe.5G178100 Prunus persica HOM05D006272 ORTHO05D007989 9.9e-84 313.9 227 68.7
Potri.015G072000 Populus trichocarpa HOM05D006272 ORTHO05D007989 8.4e-83 310.8 228 68.0
Thecc.03G005700 Theobroma cacao HOM05D006272 ORTHO05D007989 4.2e-82 308.5 232 67.2
Gohir.A03G017300 Gossypium hirsutum HOM05D006272 ORTHO05D007989 9.3e-82 307.4 222 70.3
Sabra15G0096800 Salix brachista HOM05D006272 ORTHO05D007989 1.2e-81 307.0 226 68.1
Gorai.003G157900 Gossypium raimondii HOM05D006272 ORTHO05D007989 4.6e-81 305.1 218 70.6
Actinidia19083 Actinidia chinensis HOM05D006272 ORTHO05D007989 6.0e-81 304.7 221 69.7
MD06G1180000 Malus domestica HOM05D006272 ORTHO05D007989 7.8e-81 304.3 227 67.8
Atru.chr9.2416 Acer truncatum HOM05D006272 ORTHO05D007989 1.0e-80 303.9 235 66.4
FAN04G2131 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.3e-80 303.5 193 75.6
FAN13G1305 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.3e-80 303.5 193 75.6
Eucgr.B00343 Eucalyptus grandis HOM05D006272 ORTHO05D007989 3.0e-80 302.4 226 67.7
TPR.G15079 Trifolium pratense HOM05D006272 ORTHO05D007989 3.0e-80 302.4 227 66.1
vmacro16592 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 3.0e-80 302.4 231 67.5
GSVIVG01007814001 Vitis vinifera HOM05D006272 ORTHO05D007989 1.9e-79 299.7 227 69.6
CANSAT80G1784 Cannabis sativa HOM05D006272 ORTHO05D007989 1.3e-78 297.0 228 65.4
MD06G1180300 Malus domestica HOM05D006272 ORTHO05D007989 1.3e-78 297.0 235 65.5
MD14G1185400 Malus domestica HOM05D006272 ORTHO05D007989 1.3e-78 297.0 222 68.0
Glyma.06G185200 Glycine max HOM05D006272 ORTHO05D007989 2.1e-78 296.2 225 66.2
Phvul.009G181400 Phaseolus vulgaris HOM05D006272 ORTHO05D007989 2.8e-78 295.8 227 67.0
MSTRG.4383 Avicennia marina HOM05D006272 ORTHO05D007989 6.2e-78 294.7 207 69.1
Medtr3g078320 Medicago truncatula HOM05D006272 ORTHO05D007989 6.2e-78 294.7 232 63.4
Cfa019077 Carpinus fangiana HOM05D006272 ORTHO05D007989 8.1e-78 294.3 201 72.6
CAN.G2099.3 Capsicum annuum HOM05D006272 ORTHO05D007989 1.1e-77 293.9 232 66.4
Migut.D01790 Erythranthe guttata HOM05D006272 ORTHO05D007989 1.1e-77 293.9 207 68.6
Glyma.04G179400 Glycine max HOM05D006272 ORTHO05D007989 1.1e-77 293.9 226 64.6
Ca_16206_v3 Cicer arietinum L. HOM05D006272 ORTHO05D007989 1.4e-77 293.5 233 64.8
Rhsim12G0162200 Rhododendron simsii HOM05D006272 ORTHO05D007989 1.8e-77 293.1 226 66.4
Psat5g113800 Pisum sativum HOM05D006272 ORTHO05D007989 2.0e-76 289.7 228 63.6
VMungo1309G0353 Vigna mungo HOM05D006272 ORTHO05D007989 2.0e-76 289.7 227 64.3
CSS0043549 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 5.8e-76 288.1 228 64.9
TAR622G0996 Trochodendron aralioides HOM05D006272 ORTHO05D007989 9.9e-76 287.3 213 69.5
COL.COLO4_04328 Corchorus olitorius HOM05D006272 ORTHO05D007989 1.7e-75 286.6 205 69.8
HanXRQChr16g0503601 Helianthus annuus HOM05D006272 ORTHO05D007989 2.9e-75 285.8 230 61.7
Oeu041583.1 Olea europaea HOM05D006272 ORTHO05D007989 2.9e-75 285.8 213 70.0
Cc04_g13100 Coffea canephora HOM05D006272 ORTHO05D007989 3.8e-75 285.4 193 72.5
Lj5A121G99 Lonicera japonica HOM05D006272 ORTHO05D007989 6.4e-75 284.6 201 68.7
Lj1g0014498 Lotus japonicus HOM05D006272 ORTHO05D007989 1.1e-74 283.9 226 65.0
EL10Ac5g10820 Beta vulgaris HOM05D006272 ORTHO05D007989 3.2e-74 282.3 198 71.2
Sc12g0005560 Simmondsia chinensis HOM05D006272 ORTHO05D007989 4.2e-74 282.0 230 65.2
Ah.11g046120 Amaranthus hybridus HOM05D006272 ORTHO05D007989 7.1e-74 281.2 234 64.1
ECA232G4277 Erigeron canadensis HOM05D006272 ORTHO05D007989 7.1e-74 281.2 219 62.6
SGA_v2.0_scaffold114G31850 Striga asiatica HOM05D006272 ORTHO05D007989 7.1e-74 281.2 227 63.9
Lalb_Chr23g0273081 Lupinus albus HOM05D006272 ORTHO05D007989 1.0e-72 277.3 226 64.2
FAN08G1485 Fragaria x ananassa HOM05D006272 ORTHO05D007989 3.0e-72 275.8 241 61.8
CSS0019620 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 6.6e-72 274.6 215 66.5
Nitab4.5_0006432g0010 Nicotiana tabacum HOM05D006272 ORTHO05D007989 6.6e-72 274.6 207 66.7
Solyc03g113990.3 Solanum lycopersicum HOM05D006272 ORTHO05D007989 6.6e-72 274.6 208 66.8
PGSC0003DMG400024586 Solanum tuberosum HOM05D006272 ORTHO05D007989 6.6e-72 274.6 210 65.7
arahy.Tifrunner.gnm1.ann1.I0QXBL Arachis hypogaea HOM05D006272 ORTHO05D007989 1.5e-71 273.5 219 64.8
AUR62031036 Chenopodium quinoa HOM05D006272 ORTHO05D007989 2.5e-71 272.7 170 75.9
Sopen03g033040 Solanum pennellii HOM05D006272 ORTHO05D007989 2.5e-71 272.7 206 67.0
THA.LOC104809256 Tarenaya hassleriana HOM05D006272 ORTHO05D007989 3.3e-71 272.3 226 62.8
CsaV3_1G001760 Cucumis sativus L. HOM05D006272 ORTHO05D007989 5.6e-71 271.6 227 61.2
PSO832G1007 Papaver somniferum HOM05D006272 ORTHO05D007989 1.6e-70 270.0 246 59.3
ClCG06G016760 Citrullus lanatus HOM05D006272 ORTHO05D007989 2.1e-70 269.6 229 59.8
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 2.8e-70 269.2 222 63.1
Carub.0008s1010 Capsella rubella HOM05D006272 ORTHO05D007989 4.8e-70 268.5 229 62.0
Lsat_1_v5_gn_4_72700 Lactuca sativa HOM05D006272 ORTHO05D007989 4.8e-70 268.5 190 69.5
Aqoxy3G03085 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 8.1e-70 267.7 237 61.2
AL8G24090 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 8.1e-70 267.7 227 59.5
PGR083G1342 Punica granatum HOM05D006272 ORTHO05D007989 2.4e-69 266.2 226 61.9
AUR62008277 Chenopodium quinoa HOM05D006272 ORTHO05D007989 1.2e-68 263.8 182 68.7
AT5G50100 Arabidopsis thaliana HOM05D006272 ORTHO05D007989 2.0e-68 263.1 228 58.8
Sed0009129 Sechium edule HOM05D006272 ORTHO05D007989 2.0e-68 263.1 214 62.1
Thhalv10014644m.g Eutrema salsugineum HOM05D006272 ORTHO05D007989 2.6e-68 262.7 229 60.7
Os04g0668800 Oryza sativa ssp. japonica HOM05D006272 ORTHO05D007989 1.7e-67 260.0 192 66.1
MELO3C017116.2 Cucumis melo HOM05D006272 ORTHO05D007989 4.9e-67 258.5 214 62.6
BcaB08g35362 Brassica carinata HOM05D006272 ORTHO05D007989 2.4e-66 256.1 218 61.9
Nn4g22890 Nelumbo nucifera HOM05D006272 ORTHO05D007524 2.4e-66 256.1 217 59.9
Aa31LG3G6090 Aethionema arabicum HOM05D006272 ORTHO05D007989 3.2e-66 255.8 226 60.2
Peaxi162Scf00017g02427 Petunia axillaris HOM05D006272 ORTHO05D007989 3.2e-66 255.8 228 61.4
Zm00001eb433220 Zea mays HOM05D006272 ORTHO05D007989 3.2e-66 255.8 163 74.8
Aqoxy3G03086 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 4.2e-66 255.4 236 60.2
Sp6g11960 Schrenkiella parvula HOM05D006272 ORTHO05D007989 1.2e-65 253.8 230 59.6
BcaC04g20846 Brassica carinata HOM05D006272 ORTHO05D007989 1.6e-65 253.4 231 58.4
BolC9t56708H Brassica oleracea HOM05D006272 ORTHO05D007989 1.6e-65 253.4 231 58.4
Hund09410 Selenicereus undatus HOM05D006272 ORTHO05D007989 4.6e-65 251.9 206 66.0
BraSC37t46149Z Brassica rapa HOM05D006272 ORTHO05D007989 7.9e-65 251.1 231 57.6
PSO063G7353 Papaver somniferum HOM05D006272 ORTHO05D007989 1.0e-64 250.8 231 59.7
arahy.Tifrunner.gnm1.ann1.LZB4LR Arachis hypogaea HOM05D006272 ORTHO05D007989 1.5e-63 246.9 207 62.3
C09p38510 Brassica napus HOM05D006272 ORTHO05D007989 7.4e-63 244.6 218 59.2
Nitab4.5_0001422g0120 Nicotiana tabacum HOM05D006272 ORTHO05D007989 1.3e-62 243.8 202 66.3
TWI15G0925 Tripterygium wilfordii HOM05D006272 ORTHO05D007989 4.8e-62 241.9 178 72.5
A10p08550 Brassica napus HOM05D006272 ORTHO05D007989 1.1e-61 240.7 218 58.3
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 2.2e-59 233.0 182 63.2
ATR1149G021 Amborella trichopoda HOM05D006272 ORTHO05D007989 8.4e-59 231.1 191 62.8
Cpa.g.c38966 Carica papaya HOM05D006272 ORTHO05D007989 4.2e-58 228.8 125 82.4
DCAR_021559 Daucus carota HOM05D006272 ORTHO05D007989 5.5e-58 228.4 145 73.1
HPP92_028587 Vanilla planifolia HOM05D006272 ORTHO05D007989 3.9e-56 222.2 137 73.7
Mapoly0071s0065 Marchantia polymorpha HOM05D006272 ORTHO05D007989 9.0e-53 211.1 148 64.2
CSS0030983 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 3.4e-52 209.1 139 75.5
MBI15_g12943_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 1.0e-51 207.6 183 61.2
CBR_g17090 Chara braunii HOM05D006272 ORTHO05D007989 2.5e-50 203.0 156 57.7
Pp3c1_15150 Physcomitrium patens HOM05D006272 ORTHO05D007989 1.6e-49 200.3 153 63.4
CARHR258530 Cardamine hirsuta HOM05D006272 ORTHO05D007989 5.3e-45 185.3 227 48.5
Sed0028033 Sechium edule HOM05D006272 ORTHO05D007989 1.5e-44 183.7 176 55.7
Hma1.2p1_1643F.1_g295250 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 2.5e-42 176.4 158 63.9
Hma1.2p1_2351F.1_g320495 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 2.5e-42 176.4 158 63.9
SMO134G0173 Selaginella moellendorffii HOM05D006272 ORTHO05D007989 3.0e-40 169.5 111 66.7
SalBow3G0460 Salvia bowleyana HOM05D006272 ORTHO05D007989 6.3e-38 161.8 93 81.7
Gohir.A03G017120 Gossypium hirsutum HOM05D006272 ORTHO05D007989 1.4e-37 160.6 143 61.5
Dinv09172 Davidia involucrata HOM05D006272 ORTHO05D007989 1.5e-36 157.1 138 60.1
Cpa.g.c35589.1 Carica papaya HOM05D006272 ORTHO05D007989 5.9e-36 155.2 139 60.4
AL8G10070 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 3.8e-35 152.5 93 80.6
Cre03.g145587 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 5.1e-32 142.1 131 50.4
PRCOL_00006774 Prasinoderma coloniale HOM05D006272 ORTHO05D007989 2.0e-31 140.2 136 48.5
QL12p034838 Quercus lobata HOM05D006272 ORTHO05D007989 4.8e-30 135.6 82 76.8
MCO16G260 Micromonas commoda HOM05D006272 ORTHO05D007989 3.1e-29 132.9 128 44.5
SalBow3G4540 Salvia bowleyana HOM05D006272 ORTHO05D007989 7.0e-29 131.7 140 54.3
MBI15_g10564_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 1.0e-24 117.9 116 56.9
Cre02.g095077 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 2.0e-15 87.0 114 33.3
TPR.G22672 Trifolium pratense HOM05D006272 ORTHO05D007989 5.5e-10 68.9 44 68.2
PRCOL_00004884 Prasinoderma coloniale HOM05D006272 ORTHO05D030206 9.4e-10 68.2 168 28.0
vmacro22872 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 2.2e-06 57.0 36 66.7


User provided reference genes

Program Settings