Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 6.0e-25 117.1 76 100.0
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 1.5e-20 102.4 76 85.5
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 3.4e-20 101.3 76 81.6
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 1.3e-19 99.4 76 82.9
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 1.3e-19 99.4 76 82.9
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 2.2e-19 98.6 74 81.1
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 2.9e-19 98.2 76 78.9
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 2.9e-19 98.2 76 82.9
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 3.7e-19 97.8 76 84.2
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 3.7e-19 97.8 76 84.2
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 3.7e-19 97.8 76 77.6
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 3.7e-19 97.8 76 80.3
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 4.9e-19 97.4 76 81.6
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 6.4e-19 97.1 76 80.3
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 6.4e-19 97.1 76 80.3
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 8.3e-19 96.7 76 78.9
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 1.1e-18 96.3 76 78.9
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 2.4e-18 95.1 76 78.9
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 2.4e-18 95.1 76 77.6
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 3.2e-18 94.7 74 74.3
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 5.4e-18 94.0 76 80.3
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 5.4e-18 94.0 72 79.2
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 9.2e-18 93.2 76 80.3
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 1.2e-17 92.8 77 75.3
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 1.2e-17 92.8 76 78.9
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 1.2e-17 92.8 73 79.5
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 1.6e-17 92.4 77 75.3
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 1.6e-17 92.4 77 75.3
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 1.6e-17 92.4 77 75.3
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 2.1e-17 92.0 76 81.6
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 2.1e-17 92.0 76 76.3
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.7e-17 91.7 73 79.5
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.7e-17 91.7 73 79.5
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.7e-17 91.7 73 79.5
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 2.7e-17 91.7 76 80.3
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 2.7e-17 91.7 74 67.6
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 2.7e-17 91.7 76 78.9
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 2.7e-17 91.7 76 78.9
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 4.6e-17 90.9 73 78.1
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 6.0e-17 90.5 75 78.7
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 7.8e-17 90.1 75 76.0
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 7.8e-17 90.1 73 79.5
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 7.8e-17 90.1 73 79.5
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 7.8e-17 90.1 75 76.0
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 1.0e-16 89.7 74 78.4
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 1.3e-16 89.4 76 78.9
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 1.3e-16 89.4 76 80.3
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 1.7e-16 89.0 76 78.9
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 1.7e-16 89.0 76 78.9
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 1.7e-16 89.0 76 78.9
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 1.7e-16 89.0 76 67.1
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 1.7e-16 89.0 77 79.2
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 2.3e-16 88.6 73 80.8
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 2.3e-16 88.6 76 64.5
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 3.0e-16 88.2 77 77.9
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 3.9e-16 87.8 77 77.9
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 3.9e-16 87.8 76 77.6
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 5.1e-16 87.4 76 71.1
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 5.1e-16 87.4 84 73.8
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 5.1e-16 87.4 76 69.7
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 5.1e-16 87.4 76 69.7
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 6.6e-16 87.0 75 76.0
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 6.6e-16 87.0 76 76.3
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 1.1e-15 86.3 77 72.7
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 1.1e-15 86.3 75 76.0
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 1.1e-15 86.3 76 64.5
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 1.1e-15 86.3 77 72.7
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.5e-15 85.9 76 64.5
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 1.9e-15 85.5 75 77.3
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.9e-15 85.5 77 66.2
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.9e-15 85.5 76 68.4
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 2.5e-15 85.1 76 71.1
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 2.5e-15 85.1 76 65.8
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 2.5e-15 85.1 77 76.6
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 2.5e-15 85.1 77 76.6
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 3.3e-15 84.7 77 71.4
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 3.3e-15 84.7 76 69.7
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 4.3e-15 84.3 77 75.3
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 5.6e-15 84.0 78 66.7
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 5.6e-15 84.0 76 76.3
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 7.3e-15 83.6 76 64.5
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 7.3e-15 83.6 77 76.6
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 9.5e-15 83.2 76 68.4
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 9.5e-15 83.2 76 76.3
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 1.2e-14 82.8 76 64.5
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 2.1e-14 82.0 76 67.1
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 2.1e-14 82.0 77 66.2
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 2.1e-14 82.0 75 65.3
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 2.8e-14 81.6 76 71.1
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 2.8e-14 81.6 72 77.8
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 2.8e-14 81.6 77 68.8
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 3.6e-14 81.3 77 62.3
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 8.1e-14 80.1 76 71.1
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 8.1e-14 80.1 78 66.7
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 1.1e-13 79.7 74 70.3
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 2.4e-13 78.6 73 75.3
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 2.4e-13 78.6 76 71.1
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 3.1e-13 78.2 72 70.8
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 3.1e-13 78.2 72 70.8
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 3.1e-13 78.2 72 70.8
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 3.1e-13 78.2 72 70.8
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 3.1e-13 78.2 77 75.3
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.0e-13 77.8 74 67.6
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.0e-13 77.8 74 67.6
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.0e-13 77.8 74 67.6
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.0e-13 77.8 74 67.6
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 4.0e-13 77.8 76 68.4
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 5.2e-13 77.4 49 83.7
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 6.8e-13 77.0 75 64.0
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 8.9e-13 76.6 74 67.6
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 8.9e-13 76.6 74 67.6
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 8.9e-13 76.6 75 61.3
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 1.2e-12 76.3 76 69.7
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 1.2e-12 76.3 74 70.3
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 2.6e-12 75.1 76 69.7
COL.COLO4_34052 Corchorus olitorius HOM05D003549 ORTHO05D004223 2.6e-12 75.1 77 80.5
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 5.8e-12 73.9 72 59.7
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 9.9e-12 73.2 70 61.4
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 1.3e-11 72.8 77 71.4
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 2.2e-11 72.0 50 74.0
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 2.9e-11 71.6 69 72.5
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 3.8e-11 71.2 76 69.7
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 3.8e-11 71.2 78 66.7
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 6.4e-11 70.5 77 67.5
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 8.4e-11 70.1 76 68.4
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 8.4e-11 70.1 76 64.5
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 1.4e-10 69.3 75 66.7
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 1.4e-10 69.3 76 60.5
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.9e-10 68.9 76 67.1
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 2.4e-10 68.6 76 68.4
C02p37800 Brassica napus HOM05D003549 ORTHO05D004223 7.1e-10 67.0 69 69.6
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 7.1e-10 67.0 69 56.5
Duzib068G0952 Durio zibethinus HOM05D003549 ORTHO05D004223 7.1e-10 67.0 83 66.3
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 7.1e-10 67.0 69 73.9
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 7.1e-10 67.0 75 58.7
CANSAT64G1109 Cannabis sativa HOM05D003549 ORTHO05D004223 1.6e-09 65.9 76 63.2
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 1.6e-09 65.9 74 67.6
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 2.1e-09 65.5 51 72.5
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 2.1e-09 65.5 72 55.6
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 3.5e-09 64.7 48 72.9
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 4.6e-09 64.3 67 67.2
SMO139G0002 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 6.0e-09 63.9 68 63.2
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 1.0e-08 63.2 76 63.2
BraA02t07390Z Brassica rapa HOM05D003549 ORTHO05D004223 1.7e-08 62.4 87 59.8
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 1.7e-08 62.4 76 65.8
SMO145G0027 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 1.7e-08 62.4 65 64.6
QL10p012114 Quercus lobata HOM05D003549 ORTHO05D004223 2.3e-08 62.0 130 44.6
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 3.0e-08 61.6 67 70.1
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 5.1e-08 60.8 74 56.8
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 5.1e-08 60.8 76 64.5
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 6.6e-08 60.5 51 66.7
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 8.7e-08 60.1 67 56.7
CDE05G3179 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 1.9e-07 58.9 76 51.3
Cfa019097 Carpinus fangiana HOM05D003549 ORTHO05D004223 2.5e-07 58.5 127 45.7
CDE10G0156 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 2.5e-07 58.5 73 64.4
HPP92_011135 Vanilla planifolia HOM05D003549 ORTHO05D004223 2.5e-07 58.5 110 41.8
Aqoxy3G02997 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 5.6e-07 57.4 69 63.8
Gohir.D12G274100 Gossypium hirsutum HOM05D003549 ORTHO05D004223 9.6e-07 56.6 74 62.2
Gorai.008G294500 Gossypium raimondii HOM05D003549 ORTHO05D004223 9.6e-07 56.6 74 62.2
Hma1.2p1_0967F.1_g242260 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 9.6e-07 56.6 84 47.6
EL10Ac5g10777 Beta vulgaris HOM05D003549 ORTHO05D004223 1.2e-06 56.2 70 64.3
AUR62036487 Chenopodium quinoa HOM05D003549 ORTHO05D004223 1.6e-06 55.8 72 65.3
Lalb_Chr23g0273191 Lupinus albus HOM05D003549 ORTHO05D004223 2.8e-06 55.1 30 93.3
AagrBONN_evm.TU.Sc2ySwM_117.1875 Anthoceros agrestis HOM05D003549 ORTHO05D004223 8.1e-06 53.5 73 47.9
AUR62037088 Chenopodium quinoa HOM05D003549 ORTHO05D004223 8.1e-06 53.5 72 63.9
Gohir.D07G065000 Gossypium hirsutum HOM05D003549 ORTHO05D004223 8.1e-06 53.5 51 62.7
Gorai.001G068500 Gossypium raimondii HOM05D003549 ORTHO05D004223 8.1e-06 53.5 51 62.7


User provided reference genes

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