Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 0.0e+00 2192.9 1097 100.0
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 0.0e+00 1233.8 1112 60.3
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 0.0e+00 1197.6 1110 60.0
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 0.0e+00 1172.1 1112 58.1
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 0.0e+00 1146.0 1111 57.4
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 0.0e+00 1094.0 1138 55.0
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 0.0e+00 1089.7 1171 54.1
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 0.0e+00 1086.6 1159 54.7
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 1.1e-310 1070.1 1198 52.8
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 8.5e-306 1053.9 1100 53.9
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 1.1e-302 1043.5 1160 52.6
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 2.7e-296 1022.3 1100 52.7
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 2.8e-293 1012.3 1115 52.9
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 3.8e-290 1001.9 1166 51.3
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 5.5e-289 998.0 1143 51.6
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 2.7e-288 995.7 1145 52.2
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 8.0e-288 994.2 1177 50.2
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 8.0e-288 994.2 1143 51.5
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 4.0e-287 991.9 1162 50.3
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 5.7e-286 988.0 1161 49.7
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 1.7e-285 986.5 1118 52.4
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.8e-284 983.0 1153 51.3
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 2.6e-278 962.6 1073 52.2
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 1.3e-277 960.3 1185 48.4
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.3e-277 960.3 1194 49.7
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 3.1e-276 955.7 1221 48.3
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 1.2e-275 953.7 1168 48.5
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 1.9e-265 919.8 1119 49.2
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 2.1e-264 916.4 1123 49.0
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 3.6e-264 915.6 972 54.0
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 4.7e-264 915.2 1121 48.5
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 6.1e-264 914.8 1119 49.1
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 6.8e-263 911.4 1217 46.2
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 1.7e-261 906.7 1186 46.7
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 1.2e-259 900.6 1134 47.0
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 8.0e-256 887.9 1127 47.8
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 7.5e-254 881.3 1165 47.6
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 1.7e-253 880.2 1160 47.5
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 2.4e-252 876.3 1260 43.5
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 6.6e-250 868.2 1187 45.1
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 3.6e-248 862.4 1174 45.7
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 1.1e-247 860.9 1096 48.4
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 1.7e-245 853.6 903 52.3
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 1.4e-244 850.5 1082 47.5
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 1.7e-242 843.6 1093 47.4
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 4.3e-241 839.0 1108 47.1
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 5.6e-241 838.6 1086 47.1
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 8.1e-240 834.7 1101 47.0
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 8.1e-240 834.7 1167 45.4
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 8.1e-240 834.7 1102 46.6
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 1.8e-239 833.6 1171 45.8
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 1.5e-238 830.5 1106 46.4
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 2.6e-238 829.7 1117 47.5
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 1.3e-237 827.4 1110 46.8
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 6.4e-237 825.1 1174 45.7
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 1.1e-236 824.3 1080 46.0
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 1.1e-236 824.3 1155 44.8
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 5.4e-236 822.0 1079 45.9
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 1.6e-235 820.5 1198 43.2
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 3.5e-235 819.3 1111 47.5
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 8.1e-232 808.1 1082 45.6
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 1.4e-231 807.4 1135 45.3
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 1.5e-230 803.9 555 69.7
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 2.0e-230 803.5 1125 45.2
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 1.7e-229 800.4 1113 44.6
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 2.9e-229 799.7 1084 44.1
MELO3C017091.2 Cucumis melo HOM05D000922 ORTHO05D007418 8.4e-229 798.1 1192 43.3
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 4.2e-228 795.8 1107 46.3
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 1.0e-226 791.2 1185 42.9
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 2.8e-224 783.1 1127 43.5
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 8.1e-224 781.6 1081 44.3
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 1.1e-223 781.2 1069 44.7
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 1.4e-223 780.8 1082 44.5
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 3.1e-223 779.6 1140 44.6
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 7.6e-222 775.0 558 68.1
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 8.4e-221 771.5 1157 43.9
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 1.4e-220 770.8 1079 44.4
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 1.9e-220 770.4 1169 42.2
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 4.6e-219 765.8 1096 43.6
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 5.1e-218 762.3 1128 42.5
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 9.6e-217 758.1 912 46.6
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 1.6e-216 757.3 1027 46.3
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 6.2e-216 755.4 1035 46.2
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 8.1e-216 755.0 1111 44.2
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 3.4e-214 749.6 1123 43.4
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 4.5e-214 749.2 1023 44.9
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 1.7e-213 747.3 989 45.1
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 3.8e-213 746.1 1016 44.7
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 4.9e-213 745.7 1026 44.8
Ah.02g110580 Amaranthus hybridus HOM05D000922 ORTHO05D007418 3.5e-211 739.6 1189 41.4
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 2.3e-210 736.9 1117 41.8
Gohir.A12G275000 Gossypium hirsutum HOM05D000922 ORTHO05D007418 1.1e-204 718.0 954 46.4
Dinv38573 Davidia involucrata HOM05D000922 ORTHO05D007418 1.3e-202 711.1 787 50.6
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 1.1e-199 701.4 1149 41.9
unitig_26.g9619 Utricularia gibba HOM05D000922 ORTHO05D007418 2.9e-197 693.3 1116 41.2
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 4.2e-188 662.9 1189 40.4
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 1.2e-187 661.4 1011 41.3
HPP92_009707 Vanilla planifolia HOM05D000922 ORTHO05D007418 5.0e-181 639.4 1032 40.4
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 4.2e-180 636.3 1094 39.5
Os01g0549500 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D007418 1.0e-173 615.1 570 54.0
CsaV3_1G001450 Cucumis sativus L. HOM05D000922 ORTHO05D007418 1.6e-155 554.7 954 39.8
Nitab4.5_0000025g0520 Nicotiana tabacum HOM05D000922 ORTHO05D007418 7.5e-145 519.2 1180 34.6
Actinidia33077 Actinidia chinensis HOM05D000922 ORTHO05D007418 3.9e-141 506.9 495 54.5
SHI17077 Sapria himalayana HOM05D000922 ORTHO05D007418 2.1e-139 501.1 769 40.2
COL.COLO4_30068 Corchorus olitorius HOM05D000922 ORTHO05D007418 8.1e-139 499.2 877 40.4
Cpa.g.sc2974.2 Carica papaya HOM05D000922 ORTHO05D007418 7.1e-135 486.1 313 72.5
Zm00001eb162380 Zea mays HOM05D000922 ORTHO05D007418 9.2e-135 485.7 414 58.2
Actinidia19330 Actinidia chinensis HOM05D000922 ORTHO05D007418 4.0e-130 470.3 944 38.0
Mapoly0023s0026 Marchantia polymorpha HOM05D000922 ORTHO05D007418 5.6e-124 449.9 522 47.7
SEGI_24933 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 3.8e-120 437.2 587 43.8
SMO367G0209 Selaginella moellendorffii HOM05D000922 ORTHO05D007418 3.5e-118 430.6 500 43.8
SEGI_19196 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 6.0e-118 429.9 761 38.1
Cpa.g.sc2974.1 Carica papaya HOM05D000922 ORTHO05D007418 6.6e-117 426.4 765 41.7
Pp3c26_1280 Physcomitrium patens HOM05D000922 ORTHO05D007418 1.5e-113 415.2 528 43.2
C01p31950 Brassica napus HOM05D000922 ORTHO05D007418 1.1e-84 319.3 725 34.3
Dinv20638 Davidia involucrata HOM05D000922 ORTHO05D007418 5.9e-81 307.0 227 69.2
ECA246G0682 Erigeron canadensis HOM05D000922 ORTHO05D007418 1.9e-79 302.0 689 34.1
ECA246G4214 Erigeron canadensis HOM05D000922 ORTHO05D007418 1.9e-71 275.4 222 61.7
CDE07G0520 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 8.0e-30 137.1 276 33.3
vmacro19400 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 8.1e-22 110.5 589 27.3
Lalb_Chr23g0273291 Lupinus albus HOM05D000922 ORTHO05D007418 2.3e-21 109.0 629 28.3
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 3.1e-21 108.6 80 67.5
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 8.9e-21 107.1 141 51.1
PRCOL_00005721 Prasinoderma coloniale HOM05D000922 ORTHO05D007418 1.7e-19 102.8 198 34.3
Actinidia33076 Actinidia chinensis HOM05D000922 ORTHO05D007418 3.2e-18 98.6 166 41.6
Peaxi162Scf00397g00009 Petunia axillaris HOM05D000922 ORTHO05D015732 7.3e-15 87.4 57 64.9
Peaxi162Scf00470g00024 Petunia axillaris HOM05D000861 ORTHO05D007418 1.2e-14 86.7 87 49.4
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 2.1e-14 85.9 67 59.7
Peaxi162Scf00009g02111 Petunia axillaris HOM05D000861 ORTHO05D007418 2.1e-14 85.9 111 43.2
Peaxi162Scf01130g00212 Petunia axillaris HOM05D000861 ORTHO05D007418 3.6e-14 85.1 51 70.6
Cfa000646 Carpinus fangiana HOM05D000922 ORTHO05D007418 4.7e-14 84.7 147 42.9
Peaxi162Scf00304g01332 Petunia axillaris HOM05D000922 ORTHO05D007418 6.8e-13 80.9 55 61.8
FAN04G1664 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.6e-09 69.7 127 44.1


User provided reference genes

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