Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 5.2e-111 404.4 210 100.0
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 2.3e-34 149.8 239 47.7
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 1.2e-30 137.5 240 43.3
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 1.0e-29 134.4 238 42.9
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 1.9e-28 130.2 240 42.9
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 2.5e-28 129.8 241 41.9
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 5.5e-28 128.6 235 42.1
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 3.5e-27 125.9 231 42.0
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 3.5e-27 125.9 239 41.4
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 4.6e-27 125.6 241 40.7
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 4.6e-27 125.6 240 40.8
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 4.6e-27 125.6 240 40.4
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 6.1e-27 125.2 235 41.7
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 7.9e-27 124.8 236 41.1
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 7.9e-27 124.8 236 41.1
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 1.0e-26 124.4 239 41.4
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 1.3e-26 124.0 235 41.3
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 1.3e-26 124.0 234 42.3
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 1.3e-26 124.0 233 42.5
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 2.3e-26 123.2 240 40.4
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 2.3e-26 123.2 233 40.8
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 5.1e-26 122.1 240 40.8
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 5.1e-26 122.1 244 40.2
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 6.7e-26 121.7 237 42.6
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 6.7e-26 121.7 240 40.0
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 8.7e-26 121.3 240 40.0
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 8.7e-26 121.3 239 41.4
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 8.7e-26 121.3 240 39.6
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 8.7e-26 121.3 233 42.9
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 1.9e-25 120.2 240 40.4
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 1.9e-25 120.2 240 40.0
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 1.9e-25 120.2 238 39.9
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 2.5e-25 119.8 237 42.6
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 4.3e-25 119.0 227 42.7
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 7.4e-25 118.2 225 43.1
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 7.4e-25 118.2 235 40.4
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 1.3e-24 117.5 235 40.0
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 2.2e-24 116.7 235 40.0
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.8e-24 116.3 237 40.1
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 2.8e-24 116.3 225 42.7
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 2.8e-24 116.3 225 42.7
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 3.7e-24 115.9 237 42.2
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 4.8e-24 115.5 240 38.8
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 4.8e-24 115.5 242 38.4
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 6.3e-24 115.2 241 39.8
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 8.2e-24 114.8 227 42.3
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 1.1e-23 114.4 238 39.1
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.1e-23 114.4 237 41.4
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 1.4e-23 114.0 240 40.0
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 1.8e-23 113.6 231 40.3
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 1.8e-23 113.6 245 39.6
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 3.1e-23 112.8 234 41.5
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 4.1e-23 112.5 234 40.6
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 4.1e-23 112.5 237 38.8
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 5.3e-23 112.1 228 39.9
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 9.0e-23 111.3 231 39.8
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 9.0e-23 111.3 228 39.9
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 1.2e-22 110.9 246 38.6
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 1.5e-22 110.5 231 40.3
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 1.5e-22 110.5 233 38.2
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 2.0e-22 110.2 237 38.4
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 4.5e-22 109.0 222 40.5
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 5.9e-22 108.6 229 39.3
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 5.9e-22 108.6 227 41.0
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 5.9e-22 108.6 229 39.3
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 5.9e-22 108.6 229 39.3
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 5.9e-22 108.6 241 38.6
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 1.0e-21 107.8 230 40.0
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 1.3e-21 107.5 231 39.0
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 1.3e-21 107.5 231 39.0
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.3e-21 107.5 233 39.9
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 1.3e-21 107.5 228 39.5
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 1.7e-21 107.1 229 38.9
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 1.7e-21 107.1 229 38.9
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 2.2e-21 106.7 229 38.4
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 2.2e-21 106.7 229 38.4
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 2.2e-21 106.7 227 41.4
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 2.9e-21 106.3 234 39.3
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 2.9e-21 106.3 229 38.9
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 3.8e-21 105.9 242 38.0
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 5.0e-21 105.5 255 36.9
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 5.0e-21 105.5 228 39.0
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 8.5e-21 104.8 122 51.6
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 1.9e-20 103.6 233 38.2
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 3.2e-20 102.8 231 37.7
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 7.2e-20 101.7 258 37.2
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 7.2e-20 101.7 258 37.2
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 7.2e-20 101.7 209 38.3
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 9.4e-20 101.3 220 35.9
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 2.1e-19 100.1 113 53.1
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 2.7e-19 99.8 226 39.4
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 3.6e-19 99.4 223 38.6
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 4.6e-19 99.0 232 36.6
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 6.1e-19 98.6 219 37.4
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 7.9e-19 98.2 227 37.0
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 7.9e-19 98.2 113 51.3
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 1.0e-18 97.8 231 36.8
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 1.0e-18 97.8 215 38.1
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 1.0e-18 97.8 215 38.1
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 1.4e-18 97.4 231 36.4
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 1.5e-17 94.0 216 39.4
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.3e-16 90.9 112 50.9
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 6.3e-16 88.6 126 42.1
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 6.3e-16 88.6 222 38.3
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 1.1e-15 87.8 221 35.3
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 4.1e-15 85.9 235 33.6
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 5.3e-15 85.5 235 36.6
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 9.1e-15 84.7 206 36.4
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 3.4e-14 82.8 214 37.4
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 1.3e-13 80.9 87 54.0
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 1.3e-13 80.9 87 54.0
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 1.3e-13 80.9 220 36.8
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 1.7e-13 80.5 87 54.0
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.9e-13 79.7 108 46.3
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 3.8e-13 79.3 220 35.9
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 3.6e-11 72.8 193 37.8
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 4.7e-11 72.4 223 31.8
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 1.0e-10 71.2 87 51.7
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 1.0e-10 71.2 87 51.7
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 1.1e-09 67.8 215 34.0
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 2.0e-09 67.0 113 39.8
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 2.0e-09 67.0 113 40.7
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 9.7e-09 64.7 214 31.8
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 1.8e-07 60.5 201 36.3
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 2.4e-07 60.1 241 27.8
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 4.1e-07 59.3 45 64.4


User provided reference genes

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