Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 3.7e-205 718.0 370 100.0
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 7.6e-158 560.8 346 82.1
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 2.7e-147 525.8 345 77.1
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 2.5e-145 519.2 345 75.4
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 1.6e-144 516.5 345 76.5
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 7.9e-139 497.7 345 73.6
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 1.0e-138 497.3 345 72.2
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 3.9e-138 495.4 345 73.6
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 5.1e-138 495.0 345 70.1
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 6.7e-138 494.6 345 73.3
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 9.7e-137 490.7 345 72.8
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 4.1e-135 485.3 347 71.2
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 6.9e-135 484.6 345 70.4
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 6.9e-135 484.6 345 70.1
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 2.0e-134 483.0 345 70.7
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 2.6e-134 482.6 345 71.0
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 2.6e-134 482.6 345 71.3
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 3.4e-134 482.3 345 69.3
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 5.9e-134 481.5 345 71.0
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 1.0e-133 480.7 363 68.9
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 1.3e-133 480.3 345 71.0
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 2.9e-133 479.2 345 70.4
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 2.9e-133 479.2 345 70.1
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 3.8e-133 478.8 345 70.7
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 3.8e-133 478.8 345 70.7
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 5.0e-133 478.4 345 69.0
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 1.4e-132 476.9 354 68.4
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 2.5e-132 476.1 347 70.0
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 3.2e-132 475.7 347 69.5
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 5.5e-132 474.9 345 69.6
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 1.6e-131 473.4 345 68.7
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 6.1e-131 471.5 345 68.4
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 7.9e-131 471.1 354 67.2
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 7.9e-131 471.1 350 69.4
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 1.8e-130 469.9 345 68.4
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 3.9e-130 468.8 345 68.1
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 5.1e-130 468.4 345 68.1
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 6.7e-130 468.0 341 70.4
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 8.8e-130 467.6 345 70.4
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 3.3e-129 465.7 345 67.0
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 4.3e-129 465.3 345 68.7
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 5.7e-129 464.9 345 67.8
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 1.3e-128 463.8 345 67.0
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 2.2e-128 463.0 345 68.4
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 2.8e-128 462.6 345 65.5
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 6.3e-128 461.5 345 66.1
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 1.8e-127 459.9 367 65.1
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 4.1e-127 458.8 346 67.1
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 6.9e-127 458.0 345 66.4
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 9.1e-127 457.6 345 67.5
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 1.5e-126 456.8 345 66.7
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 1.5e-126 456.8 345 65.5
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 3.4e-126 455.7 345 66.7
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 5.9e-126 454.9 347 67.4
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 1.3e-125 453.8 345 65.5
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 2.2e-125 453.0 345 64.9
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 2.9e-125 452.6 345 65.8
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 6.5e-125 451.4 345 66.4
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 6.5e-125 451.4 350 67.1
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 3.2e-124 449.1 345 67.5
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 4.2e-124 448.7 345 67.8
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 1.6e-123 446.8 346 65.3
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 2.1e-123 446.4 345 66.4
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 2.7e-123 446.0 345 65.5
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 2.6e-121 439.5 345 64.3
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 2.6e-121 439.5 345 65.5
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 2.2e-120 436.4 345 63.5
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 2.8e-120 436.0 345 63.8
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 1.4e-119 433.7 350 62.6
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 1.2e-118 430.6 345 64.9
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 2.6e-118 429.5 345 62.3
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 3.5e-118 429.1 362 62.7
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 4.5e-118 428.7 345 63.5
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 5.9e-118 428.3 345 64.3
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 2.2e-117 426.4 345 62.9
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 2.5e-116 422.9 345 62.0
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.6e-115 420.2 345 61.7
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 2.1e-115 419.9 307 67.8
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 4.7e-115 418.7 371 58.8
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 5.2e-114 415.2 345 60.3
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 5.7e-113 411.8 347 60.8
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 9.7e-113 411.0 345 60.0
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 9.7e-113 411.0 345 60.0
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 2.8e-112 409.5 370 58.9
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 3.7e-112 409.1 346 62.7
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 8.2e-112 407.9 345 59.7
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 4.1e-111 405.6 349 61.3
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 9.1e-111 404.4 345 59.1
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 9.1e-111 404.4 345 59.1
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 1.6e-110 403.7 345 59.7
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 1.6e-110 403.7 345 59.7
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.6e-110 403.7 345 59.4
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 3.5e-110 402.5 345 58.8
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 3.5e-110 402.5 345 58.8
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 5.9e-110 401.7 345 59.4
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 3.8e-109 399.1 345 58.3
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 1.5e-108 397.1 346 59.5
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 1.9e-108 396.7 372 55.6
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 1.2e-107 394.0 345 58.6
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 1.2e-107 394.0 345 58.6
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 4.0e-106 389.0 346 60.7
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 2.0e-105 386.7 345 57.4
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 2.2e-104 383.3 346 56.6
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 6.3e-104 381.7 346 57.2
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 6.3e-104 381.7 346 57.2
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 1.4e-103 380.6 346 57.2
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 9.1e-103 377.9 328 59.1
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 2.0e-102 376.7 346 56.9
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 3.8e-101 372.5 346 56.9
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 5.5e-100 368.6 345 55.4
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 9.4e-100 367.9 346 54.6
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 1.8e-95 353.6 349 53.3
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 1.3e-93 347.4 257 65.0
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 8.6e-93 344.7 345 55.7
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 4.2e-92 342.4 349 53.3
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 1.8e-90 337.0 294 59.2
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 4.1e-87 325.9 353 49.6
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 5.6e-84 315.5 347 48.1
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 1.9e-76 290.4 222 64.0
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 7.5e-73 278.5 347 45.2
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.6e-70 270.8 348 44.3
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 3.5e-70 269.6 350 42.6
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.2e-67 261.2 190 71.1
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 1.4e-66 257.7 274 51.1
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.6e-62 244.2 345 42.0
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 4.4e-57 226.1 180 63.9
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 3.1e-42 176.8 228 40.8
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 7.6e-41 172.2 356 34.6
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 2.3e-37 160.6 353 31.4
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 9.3e-31 138.7 102 65.7
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 2.0e-25 120.9 464 25.4
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 6.5e-24 115.9 219 37.9
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 2.7e-22 110.5 87 63.2
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 3.7e-19 100.1 90 60.0
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 5.3e-18 96.3 106 50.0
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 1.3e-16 91.7 92 53.3
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 5.5e-15 86.3 252 30.2
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 2.0e-12 77.8 109 43.1
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 3.3e-12 77.0 78 52.6
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 4.3e-12 76.6 111 40.5
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 1.3e-11 75.1 67 58.2
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 1.8e-10 71.2 325 25.8
Medtr5g009630 Medicago truncatula HOM05D004543 ORTHO05D004261 1.7e-08 64.7 62 51.6


User provided reference genes

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