Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 3.3e-84 315.1 169 100.0
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.6e-62 243.0 171 78.4
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 2.0e-60 236.1 168 77.4
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 1.7e-56 223.0 156 77.6
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 9.4e-55 217.2 171 70.2
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 2.7e-54 215.7 173 71.1
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 6.1e-54 214.5 165 70.3
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 3.0e-53 212.2 171 69.0
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 6.7e-53 211.1 166 70.5
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.5e-52 209.9 171 69.0
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 2.6e-52 209.1 169 70.4
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 2.2e-51 206.1 166 70.5
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 6.3e-51 204.5 171 66.7
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 2.4e-50 202.6 168 67.3
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 3.1e-50 202.2 168 66.7
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 5.3e-50 201.4 169 66.3
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 7.0e-50 201.1 168 67.3
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 7.0e-50 201.1 185 63.8
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 9.1e-50 200.7 169 67.5
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 2.0e-49 199.5 167 70.1
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 2.7e-49 199.1 166 66.9
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 5.9e-49 198.0 167 69.5
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 5.9e-49 198.0 171 67.3
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 2.2e-48 196.1 169 65.1
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 2.9e-48 195.7 165 66.7
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.1e-47 193.7 168 66.7
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 1.9e-47 193.0 167 66.5
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.9e-47 193.0 168 67.3
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 1.9e-47 193.0 171 64.3
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 2.5e-47 192.6 167 67.7
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 3.2e-47 192.2 167 68.3
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 2.7e-46 189.1 161 67.7
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 3.6e-46 188.7 172 65.1
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 1.8e-45 186.4 167 65.9
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.8e-45 186.4 170 62.9
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 8.8e-45 184.1 169 64.5
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 1.5e-44 183.3 170 61.8
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 2.8e-43 179.1 170 64.7
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 3.7e-43 178.7 158 62.0
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 1.4e-42 176.8 167 63.5
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 2.4e-42 176.0 168 60.7
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 4.1e-42 175.3 158 60.8
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 1.6e-41 173.3 159 63.5
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 2.0e-41 172.9 165 61.2
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 5.9e-41 171.4 166 59.0
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 5.9e-41 171.4 166 59.0
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 1.3e-40 170.2 176 61.9
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 1.7e-40 169.9 169 60.4
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 2.3e-40 169.5 170 58.8
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 3.8e-40 168.7 171 59.6
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 3.8e-40 168.7 184 57.1
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 1.9e-39 166.4 165 60.6
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 2.5e-39 166.0 145 64.1
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 2.5e-39 166.0 153 62.7
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 2.5e-39 166.0 160 61.9
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 3.3e-39 165.6 159 59.7
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 5.5e-39 164.9 167 58.1
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 1.2e-38 163.7 159 59.1
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 2.8e-38 162.5 156 63.5
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 2.8e-38 162.5 124 73.4
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 2.8e-38 162.5 173 59.5
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 3.6e-38 162.2 166 59.0
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 4.7e-38 161.8 164 61.6
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 6.1e-38 161.4 156 63.5
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 6.1e-38 161.4 156 63.5
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 1.0e-37 160.6 156 62.2
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 1.8e-37 159.8 175 57.7
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 2.3e-37 159.5 129 69.0
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 1.2e-36 157.1 137 63.5
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 2.6e-36 156.0 154 61.7
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.4e-36 155.6 156 60.9
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 7.5e-36 154.5 156 60.3
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 7.5e-36 154.5 156 60.3
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.7e-35 153.3 156 59.6
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 2.2e-35 152.9 167 60.5
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 2.2e-35 152.9 166 56.0
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 2.8e-35 152.5 168 53.6
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 3.7e-35 152.1 167 55.1
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 4.9e-35 151.8 169 58.0
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 6.3e-35 151.4 148 59.5
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.1e-34 150.6 156 59.6
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 3.1e-34 149.1 166 56.6
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 9.2e-34 147.5 156 57.1
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 9.2e-34 147.5 175 53.1
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 1.6e-33 146.7 160 53.8
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 2.7e-33 146.0 144 61.1
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 2.7e-33 146.0 151 56.3
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 2.7e-33 146.0 192 48.4
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 4.5e-33 145.2 169 55.0
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 1.0e-32 144.1 151 56.3
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 2.3e-32 142.9 124 61.3
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 2.9e-32 142.5 136 61.0
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 2.9e-32 142.5 136 61.0
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.3e-31 138.7 156 57.1
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 5.6e-31 138.3 182 50.5
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 7.3e-31 137.9 154 55.8
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.2e-30 137.1 164 56.1
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 1.6e-30 136.7 159 56.6
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 2.1e-30 136.3 166 51.8
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 3.1e-29 132.5 160 46.9
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 8.9e-29 131.0 155 52.9
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 1.3e-27 127.1 161 56.5
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 1.7e-27 126.7 159 47.2
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 2.2e-27 126.3 160 51.2
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 2.2e-27 126.3 228 44.7
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 3.7e-27 125.6 171 50.9
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 1.4e-26 123.6 150 48.7
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 2.4e-26 122.9 151 54.3
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 2.4e-26 122.9 114 63.2
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 3.2e-26 122.5 146 50.7
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 3.2e-26 122.5 194 47.4
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 7.0e-26 121.3 159 52.8
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 2.7e-25 119.4 148 53.4
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 4.6e-25 118.6 147 48.3
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 1.0e-24 117.5 150 54.0
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 1.7e-24 116.7 100 66.0
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 3.9e-24 115.5 115 60.9
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.6e-24 114.8 98 67.3
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 3.6e-22 109.0 153 47.1
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 8.0e-22 107.8 169 45.6
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 5.8e-20 101.7 95 61.1
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 3.7e-19 99.0 161 43.5
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 6.4e-19 98.2 98 57.1
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 8.3e-19 97.8 110 56.4
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 1.1e-18 97.4 116 53.4
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 5.4e-18 95.1 116 52.6
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 5.4e-18 95.1 169 40.2
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 7.0e-18 94.7 93 57.0
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 5.1e-16 88.6 83 60.2
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 1.5e-15 87.0 113 50.4
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.6e-14 83.6 103 54.4
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.6e-14 83.6 103 54.4
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.8e-14 82.8 103 53.4
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.8e-14 82.8 71 64.8
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 2.8e-14 82.8 79 57.0
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 3.6e-14 82.4 151 41.7
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 1.4e-13 80.5 85 58.8
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.0e-12 76.6 56 75.0
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 2.0e-12 76.6 56 69.6
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 7.5e-12 74.7 106 48.1
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 9.2e-10 67.8 63 57.1
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 2.1e-09 66.6 59 62.7
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 1.3e-08 63.9 164 36.0
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 1.7e-08 63.5 55 58.2
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 1.9e-07 60.1 280 30.0
SEGI_01314 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 4.7e-06 55.5 43 62.8
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 8.1e-06 54.7 95 45.3


User provided reference genes

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