Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 4.2e-253 877.5 427 100.0
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 7.1e-208 727.2 422 83.9
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 1.1e-205 719.9 424 83.3
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 1.1e-197 693.3 429 79.0
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 1.9e-197 692.6 424 80.0
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 5.6e-197 691.0 427 78.5
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 2.1e-196 689.1 427 78.0
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 6.9e-195 684.1 430 78.6
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 9.0e-195 683.7 429 78.8
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 3.4e-194 681.8 430 78.1
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 1.0e-190 670.2 424 76.2
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 4.3e-189 664.8 427 75.2
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 5.6e-189 664.5 428 75.5
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 6.2e-188 661.0 426 76.8
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 6.4e-185 651.0 435 73.6
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 2.4e-184 649.0 432 72.2
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 3.2e-184 648.7 428 73.6
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 7.1e-184 647.5 427 74.9
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 2.1e-183 646.0 425 73.6
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 3.5e-183 645.2 427 74.0
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 6.7e-182 641.0 427 73.8
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 6.7e-182 641.0 424 73.3
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 8.7e-182 640.6 427 73.5
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 3.3e-181 638.6 427 72.6
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 5.6e-181 637.9 435 71.5
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 5.6e-181 637.9 419 73.7
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 2.1e-180 636.0 427 73.1
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 8.2e-180 634.0 435 71.0
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 8.2e-180 634.0 432 72.9
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 1.1e-179 633.6 427 72.4
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 1.5e-178 629.8 427 72.1
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 3.4e-178 628.6 427 71.4
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 7.6e-178 627.5 427 72.1
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 6.5e-177 624.4 426 70.4
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 4.2e-176 621.7 428 71.3
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 5.5e-176 621.3 427 69.1
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 1.2e-175 620.2 427 71.4
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 3.5e-175 618.6 427 70.3
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 3.5e-175 618.6 427 69.8
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 7.9e-175 617.5 390 77.7
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 3.0e-174 615.5 426 73.5
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 5.1e-174 614.8 427 69.6
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 8.7e-174 614.0 426 69.7
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 8.7e-174 614.0 424 71.0
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 1.1e-173 613.6 424 71.0
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 1.5e-173 613.2 429 71.6
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 1.9e-173 612.8 427 69.6
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 2.5e-173 612.5 425 69.6
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 4.3e-173 611.7 427 69.3
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 5.7e-173 611.3 427 69.1
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 5.7e-173 611.3 428 68.7
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 7.4e-173 610.9 425 69.4
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 8.2e-172 607.4 430 69.8
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 1.1e-171 607.1 434 68.9
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 1.4e-171 606.7 425 70.1
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 1.4e-171 606.7 427 69.8
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 2.4e-171 605.9 428 70.1
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 2.4e-171 605.9 492 64.8
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 4.5e-170 601.7 410 69.0
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 1.0e-169 600.5 428 69.2
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 2.2e-169 599.4 427 68.6
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 1.9e-168 596.3 427 69.8
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.5e-168 595.9 388 74.2
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 1.6e-167 593.2 429 68.1
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 6.1e-167 591.3 429 67.8
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 7.9e-167 590.9 422 69.0
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.4e-166 590.1 457 65.6
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 5.1e-166 588.2 427 67.9
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 6.7e-166 587.8 442 66.3
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 1.5e-165 586.6 425 68.7
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 3.3e-165 585.5 431 66.1
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 4.3e-165 585.1 429 68.5
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 9.7e-165 583.9 421 68.4
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 1.8e-163 579.7 426 68.5
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.9e-163 577.8 425 69.2
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 2.0e-162 576.2 421 67.5
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 4.5e-162 575.1 438 65.3
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.3e-161 573.5 404 70.8
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 1.3e-161 573.5 456 64.9
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 8.5e-161 570.9 425 68.5
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 8.5e-161 570.9 479 61.8
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.6e-159 566.6 425 67.8
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 5.7e-157 558.1 396 69.2
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.8e-156 555.8 465 62.6
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 8.2e-156 554.3 424 64.6
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 9.1e-155 550.8 419 63.2
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.2e-154 550.4 393 68.2
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 7.7e-154 547.7 427 64.6
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 1.3e-153 547.0 398 69.3
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.6e-151 540.0 334 76.9
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 3.9e-150 535.4 453 62.5
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 7.7e-146 521.2 428 64.0
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 7.2e-144 514.6 319 74.6
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 1.5e-141 506.9 340 70.6
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 5.7e-141 505.0 426 61.0
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 4.8e-140 501.9 302 77.5
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 4.8e-140 501.9 311 79.1
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 3.5e-138 495.7 311 72.3
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 4.5e-138 495.4 304 76.6
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 3.0e-134 482.6 425 58.6
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.7e-130 469.5 326 69.6
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 1.0e-129 467.6 335 69.0
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 3.8e-129 465.7 422 57.6
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 5.2e-126 455.3 424 54.7
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 7.5e-125 451.4 438 54.6
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 2.3e-121 439.9 423 52.2
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 1.1e-120 437.6 424 53.5
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 1.0e-118 431.0 414 52.9
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 8.6e-105 384.8 321 60.1
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.2e-103 380.9 316 59.5
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.6e-103 380.6 278 68.7
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.0e-97 359.8 303 59.4
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 9.9e-85 318.2 278 61.2
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 4.8e-79 299.3 183 69.9
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 3.4e-77 293.1 380 45.8
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 4.5e-69 266.2 452 37.6
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 3.5e-66 256.5 218 52.3
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 1.8e-57 227.6 421 37.1
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 4.8e-55 219.5 564 30.5
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.6e-50 204.5 129 76.7
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 8.8e-49 198.7 210 52.4
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 7.4e-48 195.7 119 80.7
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 1.3e-47 194.9 253 46.2
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 1.2e-42 178.3 138 63.0
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 4.7e-42 176.4 117 71.8
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 2.6e-29 134.0 125 61.6
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 5.2e-25 119.8 256 34.4
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 3.7e-23 113.6 147 47.6
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 5.4e-22 109.8 107 50.5
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 3.4e-16 90.5 59 66.1
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 3.6e-10 70.5 72 55.6
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 7.5e-08 62.8 39 69.2
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 1.7e-07 61.6 111 38.7


User provided reference genes

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