Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G050500 Manihot esculenta HOM05D007115 ORTHO05D008923 2.3e-128 462.2 230 100.0
Haze_07151 Corylus avellana HOM05D007115 ORTHO05D008923 1.4e-90 336.7 230 75.2
Atru.chr6.1807 Acer truncatum HOM05D007115 ORTHO05D008923 1.2e-89 333.6 230 74.3
Potri.015G097700 Populus trichocarpa HOM05D007115 ORTHO05D008923 2.7e-89 332.4 230 75.7
Sabra15G0118300 Salix brachista HOM05D007115 ORTHO05D008923 1.0e-88 330.5 230 75.2
Cfa018785 Carpinus fangiana HOM05D007115 ORTHO05D008923 3.9e-88 328.6 232 74.6
CiPaw.12G043900 Carya illinoinensis HOM05D007115 ORTHO05D008923 2.6e-87 325.9 230 73.9
Cpa.g.sc13.101 Carica papaya HOM05D007115 ORTHO05D008923 7.4e-87 324.3 230 70.4
Dinv23157 Davidia involucrata HOM05D007115 ORTHO05D008923 1.7e-83 313.2 221 73.3
Thecc.03G130400 Theobroma cacao HOM05D007115 ORTHO05D008923 2.5e-82 309.3 224 71.9
ClCG03G003830 Citrullus lanatus HOM05D007115 ORTHO05D008923 5.5e-82 308.1 196 77.6
Ciclev10032623m.g Citrus clementina HOM05D007115 ORTHO05D008923 5.5e-82 308.1 237 69.6
RcHm_v2.0_Chr7g0190021 Rosa chinensis HOM05D007115 ORTHO05D008923 1.2e-81 307.0 234 68.8
Hund02448 Selenicereus undatus HOM05D007115 ORTHO05D008923 6.1e-81 304.7 236 66.5
CsaV3_1G009730 Cucumis sativus L. HOM05D007115 ORTHO05D008923 1.0e-80 303.9 196 76.0
MELO3C002367.2 Cucumis melo HOM05D007115 ORTHO05D008923 2.3e-80 302.8 196 76.0
FvH4_5g08420 Fragaria vesca HOM05D007115 ORTHO05D008923 4.0e-80 302.0 227 67.0
MD06G1140800 Malus domestica HOM05D007115 ORTHO05D008923 4.0e-80 302.0 231 68.8
FAN13G1038 Fragaria x ananassa HOM05D007115 ORTHO05D008923 5.2e-80 301.6 227 66.5
FAN04G1902 Fragaria x ananassa HOM05D007115 ORTHO05D008923 8.8e-80 300.8 227 66.5
Sc04g0000560 Simmondsia chinensis HOM05D007115 ORTHO05D008923 8.8e-80 300.8 230 67.0
Hma1.2p1_0014F.1_g009320 Hydrangea macrophylla HOM05D007115 ORTHO05D008923 1.5e-79 300.1 232 69.8
Prupe.5G150000 Prunus persica HOM05D007115 ORTHO05D008923 5.7e-79 298.1 231 68.4
GSVIVG01008566001 Vitis vinifera HOM05D007115 ORTHO05D008923 1.7e-78 296.6 220 69.5
Duzib205G1497 Durio zibethinus HOM05D007115 ORTHO05D008923 2.2e-78 296.2 231 68.4
FAN08G1896 Fragaria x ananassa HOM05D007115 ORTHO05D008923 2.2e-78 296.2 227 65.6
Actinidia25565 Actinidia chinensis HOM05D007115 ORTHO05D008923 2.8e-78 295.8 230 67.8
FAN18G3505 Fragaria x ananassa HOM05D007115 ORTHO05D008923 3.7e-78 295.4 234 66.2
Rhsim08G0191000 Rhododendron simsii HOM05D007115 ORTHO05D008923 6.3e-78 294.7 229 65.9
TWI39G0929 Tripterygium wilfordii HOM05D007115 ORTHO05D008923 1.1e-77 293.9 232 68.1
Lj5A95G76 Lonicera japonica HOM05D007115 ORTHO05D008923 2.0e-76 289.7 222 69.8
QL10p002688 Quercus lobata HOM05D007115 ORTHO05D008923 2.7e-76 289.3 283 59.4
vmacro19121 Vaccinium macrocarpon HOM05D007115 ORTHO05D008923 4.5e-76 288.5 230 66.1
Glyma.06G169300 Glycine max HOM05D007115 ORTHO05D008923 5.0e-75 285.0 229 65.5
Aqoxy5G03328 Aquilegia oxysepala HOM05D007115 ORTHO05D008923 1.1e-74 283.9 233 64.4
THA.LOC104811583 Tarenaya hassleriana HOM05D007115 ORTHO05D008923 2.5e-74 282.7 236 65.7
Lj1g0010129 Lotus japonicus HOM05D007115 ORTHO05D008923 7.2e-74 281.2 230 64.8
CSS0028949 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 1.6e-73 280.0 243 64.2
Ca_16052_v3 Cicer arietinum L. HOM05D007115 ORTHO05D008923 1.6e-73 280.0 231 65.8
Oeu004998.1 Olea europaea HOM05D007115 ORTHO05D008923 1.6e-73 280.0 184 73.9
CSS0028892 Camellia sinensis var. sinensis HOM05D007115 ORTHO05D008923 2.1e-73 279.6 243 64.6
Glyma.04G196500 Glycine max HOM05D007115 ORTHO05D008923 1.4e-72 276.9 229 65.1
PGR083G2674 Punica granatum HOM05D007115 ORTHO05D008923 4.0e-72 275.4 173 80.9
CANSAT80G2203 Cannabis sativa HOM05D007115 ORTHO05D008923 5.2e-72 275.0 235 63.8
ATR0790G002 Amborella trichopoda HOM05D007115 ORTHO05D008923 1.5e-71 273.5 183 74.9
VMungo1309G2111 Vigna mungo HOM05D007115 ORTHO05D008923 2.0e-71 273.1 208 68.8
Eucgr.B00101 Eucalyptus grandis HOM05D007115 ORTHO05D008923 4.4e-71 271.9 215 67.0
Lsat_1_v5_gn_1_33120 Lactuca sativa HOM05D007115 ORTHO05D008923 4.4e-71 271.9 236 63.1
Nitab4.5_0000624g0110 Nicotiana tabacum HOM05D007115 ORTHO05D008923 9.8e-71 270.8 234 62.4
Medtr3g099140 Medicago truncatula HOM05D007115 ORTHO05D008923 2.8e-70 269.2 231 63.6
Lalb_Chr11g0069511 Lupinus albus HOM05D007115 ORTHO05D008923 3.7e-70 268.9 200 68.0
EL10Ac5g11401 Beta vulgaris HOM05D007115 ORTHO05D008923 6.3e-70 268.1 196 68.9
Phvul.009G165800 Phaseolus vulgaris HOM05D007115 ORTHO05D008923 1.1e-69 267.3 224 64.7
HanXRQChr02g0034681 Helianthus annuus HOM05D007115 ORTHO05D008923 1.4e-69 266.9 224 66.5
Aa31LG7G10860 Aethionema arabicum HOM05D007115 ORTHO05D008923 4.1e-69 265.4 239 59.0
AUR62034838 Chenopodium quinoa HOM05D007115 ORTHO05D008923 4.1e-69 265.4 171 76.0
Peaxi162Scf00089g00121 Petunia axillaris HOM05D007115 ORTHO05D008923 4.1e-69 265.4 233 62.2
Sopen03g029960 Solanum pennellii HOM05D007115 ORTHO05D008923 4.1e-69 265.4 220 63.6
Nitab4.5_0001311g0160 Nicotiana tabacum HOM05D007115 ORTHO05D008923 5.4e-69 265.0 195 69.2
PGSC0003DMG400015264 Solanum tuberosum HOM05D007115 ORTHO05D008923 9.1e-69 264.2 189 69.8
MSTRG.11273 Avicennia marina HOM05D007115 ORTHO05D008923 1.2e-68 263.8 185 71.4
Solyc03g019660.4 Solanum lycopersicum HOM05D007115 ORTHO05D008923 2.7e-68 262.7 198 66.7
CDE02G1164 Ceratophyllum demersum HOM05D007115 ORTHO05D008923 5.9e-68 261.5 214 64.0
TPR.G14207 Trifolium pratense HOM05D007115 ORTHO05D008923 1.3e-67 260.4 186 72.0
AL7G28270 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 1.7e-67 260.0 239 59.8
Carub.0007s1613 Capsella rubella HOM05D007115 ORTHO05D008923 3.8e-67 258.8 233 59.7
DCAR_007496 Daucus carota HOM05D007115 ORTHO05D008923 1.5e-66 256.9 196 68.4
CARHR232330 Cardamine hirsuta HOM05D007115 ORTHO05D008923 1.9e-66 256.5 203 66.5
Thhalv10026135m.g Eutrema salsugineum HOM05D007115 ORTHO05D008923 7.2e-66 254.6 189 69.8
CAN.G1611.7 Capsicum annuum HOM05D007115 ORTHO05D008923 9.5e-66 254.2 187 68.4
AT4G24930 Arabidopsis thaliana HOM05D007115 ORTHO05D008923 1.6e-65 253.4 233 58.8
BcaNung06011 Brassica carinata HOM05D007115 ORTHO05D008923 4.7e-65 251.9 227 61.2
Gohir.A11G036350 Gossypium hirsutum HOM05D007115 ORTHO05D008923 4.7e-65 251.9 177 72.9
Cc04_g09720 Coffea canephora HOM05D007115 ORTHO05D008923 1.0e-64 250.8 234 60.3
Gohir.D11G039800 Gossypium hirsutum HOM05D007115 ORTHO05D008923 2.3e-64 249.6 213 62.9
Sp7g22910 Schrenkiella parvula HOM05D007115 ORTHO05D008923 2.0e-63 246.5 210 61.9
Gorai.007G042800 Gossypium raimondii HOM05D007115 ORTHO05D008923 2.6e-63 246.1 176 71.6
unitig_8.g3030 Utricularia gibba HOM05D007115 ORTHO05D008923 2.6e-63 246.1 190 65.8
PSO017G0512 Papaver somniferum HOM05D007115 ORTHO05D008923 4.4e-63 245.4 183 72.7
Migut.I00540 Erythranthe guttata HOM05D007115 ORTHO05D008923 5.7e-63 245.0 233 60.1
ECA247G2755 Erigeron canadensis HOM05D001512 ORTHO05D001574 7.5e-63 244.6 191 63.9
HPP92_023120 Vanilla planifolia HOM05D007115 ORTHO05D008923 7.5e-63 244.6 185 63.8
BolC1t01950H Brassica oleracea HOM05D007115 ORTHO05D008923 1.3e-62 243.8 187 68.4
A01p16220 Brassica napus HOM05D007115 ORTHO05D008923 4.1e-61 238.8 187 66.8
BraA01t01558Z Brassica rapa HOM05D007115 ORTHO05D008923 4.1e-61 238.8 187 66.8
SalBow5G3672 Salvia bowleyana HOM05D007115 ORTHO05D008923 9.2e-61 237.7 270 53.7
TAR622G0416 Trochodendron aralioides HOM05D007115 ORTHO05D008923 2.3e-59 233.0 173 68.8
C01p20210 Brassica napus HOM05D007115 ORTHO05D008923 8.6e-59 231.1 180 67.2
Nn4g22293 Nelumbo nucifera HOM05D007115 ORTHO05D008923 1.6e-57 226.9 152 75.7
SGA_v2.0_scaffold258G45802 Striga asiatica HOM05D007115 ORTHO05D008923 4.0e-56 222.2 241 53.1
arahy.Tifrunner.gnm1.ann1.YTW6SU Arachis hypogaea HOM05D007115 ORTHO05D008923 9.2e-45 184.5 186 58.1
Zm00001eb334110 Zea mays HOM05D007115 ORTHO05D008923 8.6e-43 177.9 148 60.8
AUR62029602 Chenopodium quinoa HOM05D007115 ORTHO05D008923 5.2e-40 168.7 99 77.8
COL.COLO4_28141 Corchorus olitorius HOM05D007115 ORTHO05D008923 5.2e-40 168.7 99 81.8
Os01g0102300 Oryza sativa ssp. japonica HOM05D007115 ORTHO05D008923 2.2e-38 163.3 160 54.4
MBI11_g41395_MAGBIO Magnolia biondii HOM05D007115 ORTHO05D008923 3.0e-35 152.9 100 75.0
Pp3c6_23090 Physcomitrium patens HOM05D007115 ORTHO05D008923 4.7e-33 145.6 167 46.1
Psat5g051920 Pisum sativum HOM05D007115 ORTHO05D008923 6.2e-33 145.2 121 65.3
SMO356G0600 Selaginella moellendorffii HOM05D007115 ORTHO05D008923 2.9e-30 136.3 153 47.1
arahy.Tifrunner.gnm1.ann1.BUY811 Arachis hypogaea HOM05D007115 ORTHO05D008923 6.4e-30 135.2 115 66.1
Sed0002696 Sechium edule HOM05D007115 ORTHO05D008923 2.5e-26 123.2 100 67.0
ATR0405G001 Amborella trichopoda HOM05D007115 ORTHO05D008923 1.4e-24 117.5 62 88.7
Actinidia18342 Actinidia chinensis HOM05D007115 ORTHO05D008923 3.1e-24 116.3 64 79.7
SEGI_00544 Sequoiadendron giganteum HOM05D007115 ORTHO05D008923 2.9e-22 109.8 111 50.5
Ah.02g114850 Amaranthus hybridus HOM05D007115 ORTHO05D008923 1.3e-19 100.9 140 47.1
Actinidia18341 Actinidia chinensis HOM05D000804 ORTHO05D000989 9.9e-15 84.7 103 50.5
FAN18G1815 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.3e-14 84.3 59 67.8
FAN13G2062 Fragaria x ananassa HOM05D007115 ORTHO05D008923 1.4e-13 80.9 61 67.2
Sabra12G0072200 Salix brachista HOM05D007115 ORTHO05D008923 1.6e-12 77.4 60 70.0
AL6G46780 Arabidopsis lyrata HOM05D007115 ORTHO05D008923 7.9e-12 75.1 120 42.5
Cre17.g714900 Chlamydomonas reinhardtii HOM05D007115 ORTHO05D008923 1.9e-10 70.5 159 28.9
FAN04G0070 Fragaria x ananassa HOM05D007115 ORTHO05D008923 2.6e-07 60.1 53 58.5


User provided reference genes

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