Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 7.6e-99 364.0 207 100.0
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 6.3e-61 238.0 211 69.2
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 7.0e-60 234.6 207 66.2
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 3.5e-59 232.3 211 65.4
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 7.7e-59 231.1 211 64.0
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 1.0e-58 230.7 213 63.8
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 1.7e-58 229.9 211 64.0
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 6.1e-56 221.5 201 66.7
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 3.4e-54 215.7 197 65.5
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 5.7e-54 214.9 210 63.8
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 1.7e-53 213.4 208 65.4
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 1.8e-52 209.9 208 62.0
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 1.8e-52 209.9 208 62.0
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 3.1e-52 209.1 199 62.8
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 3.1e-52 209.1 202 61.4
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 1.2e-51 207.2 195 66.2
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 1.6e-51 206.8 208 63.0
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 5.9e-51 204.9 195 69.2
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 5.0e-50 201.8 202 59.9
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 6.5e-50 201.4 208 62.0
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 1.5e-49 200.3 196 65.3
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 1.5e-49 200.3 200 59.0
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 2.5e-49 199.5 218 60.6
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 4.2e-49 198.7 211 59.7
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 5.5e-49 198.4 199 59.8
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 1.2e-48 197.2 212 57.5
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 2.8e-48 196.1 196 59.7
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.0e-47 194.1 206 59.7
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 1.4e-47 193.7 206 58.3
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 1.8e-47 193.4 205 59.5
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 2.3e-47 193.0 206 59.7
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 6.8e-47 191.4 203 60.6
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 1.2e-46 190.7 195 57.9
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 1.5e-46 190.3 210 58.1
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.5e-46 190.3 206 58.3
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 2.0e-46 189.9 196 57.7
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 5.7e-46 188.3 195 57.9
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 7.5e-46 188.0 201 57.7
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 7.5e-46 188.0 201 57.7
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 1.3e-45 187.2 204 57.4
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 1.3e-45 187.2 196 58.2
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 1.1e-44 184.1 204 54.9
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 1.1e-44 184.1 208 56.7
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 1.4e-44 183.7 207 56.0
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 1.8e-44 183.3 205 58.0
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 1.8e-44 183.3 196 57.7
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 4.1e-44 182.2 198 54.5
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 7.0e-44 181.4 199 59.3
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 9.2e-44 181.0 206 58.7
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 2.7e-43 179.5 206 56.8
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 2.7e-43 179.5 208 54.3
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 3.5e-43 179.1 203 57.1
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 7.8e-43 177.9 204 55.9
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 7.8e-43 177.9 194 59.3
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 1.0e-42 177.6 208 56.7
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 1.0e-42 177.6 195 54.4
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 1.7e-42 176.8 208 58.2
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 3.8e-42 175.6 199 52.8
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 3.8e-42 175.6 208 53.4
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 5.0e-42 175.3 194 56.7
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 8.6e-42 174.5 208 56.2
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 1.9e-41 173.3 194 57.7
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 1.9e-41 173.3 194 57.7
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 1.9e-41 173.3 258 48.4
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 2.5e-41 172.9 211 53.6
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 4.3e-41 172.2 194 56.7
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 4.3e-41 172.2 194 56.7
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 4.3e-41 172.2 208 50.5
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 4.3e-41 172.2 208 56.2
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 5.6e-41 171.8 206 51.5
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 9.5e-41 171.0 194 57.7
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 2.1e-40 169.9 230 53.0
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 2.1e-40 169.9 211 52.6
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 1.0e-39 167.5 195 53.3
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 1.0e-39 167.5 206 50.5
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 1.4e-39 167.2 197 53.3
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 1.8e-39 166.8 197 53.8
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 2.3e-39 166.4 206 50.5
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 2.3e-39 166.4 197 52.8
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 3.0e-39 166.0 198 54.0
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 3.0e-39 166.0 203 53.7
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 6.8e-39 164.9 218 52.3
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 2.0e-38 163.3 194 54.1
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 2.6e-38 162.9 196 53.6
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 2.6e-38 162.9 206 51.0
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 3.4e-38 162.5 195 54.9
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 2.2e-37 159.8 195 51.3
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 2.2e-37 159.8 195 51.8
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 2.2e-37 159.8 206 51.9
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 4.9e-37 158.7 211 51.7
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 4.9e-37 158.7 208 50.5
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 4.9e-37 158.7 212 50.5
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 8.3e-37 157.9 207 53.1
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 1.4e-36 157.1 214 49.5
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 2.4e-36 156.4 194 52.6
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 4.1e-36 155.6 206 48.1
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 7.8e-35 151.4 194 52.1
BolC9t53848H Brassica oleracea HOM05D005391 ORTHO05D006694 1.7e-34 150.2 190 53.2
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 6.6e-34 148.3 212 50.5
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 1.1e-33 147.5 194 49.5
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 2.5e-33 146.4 203 45.8
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 4.3e-33 145.6 245 44.5
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 4.3e-33 145.6 245 44.5
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 1.2e-32 144.1 196 48.5
BcaC04g23332 Brassica carinata HOM05D005391 ORTHO05D006694 1.2e-32 144.1 190 52.1
C09p09360 Brassica napus HOM05D005391 ORTHO05D006694 1.2e-32 144.1 190 52.1
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 1.4e-31 140.6 196 47.4
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 5.2e-31 138.7 192 50.5
Actinidia08882 Actinidia chinensis HOM05D005391 ORTHO05D006694 6.8e-31 138.3 176 53.4
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 3.7e-29 132.5 199 46.2
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 3.2e-28 129.4 196 44.9
HanXRQChr09g0273301 Helianthus annuus HOM05D005391 ORTHO05D006694 2.7e-27 126.3 168 50.0
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 1.5e-25 120.6 196 41.3
Ah.07g204620 Amaranthus hybridus HOM05D005391 ORTHO05D006694 1.9e-25 120.2 173 46.8
FAN23G2258 Fragaria x ananassa HOM05D005391 ORTHO05D006694 2.5e-25 119.8 168 47.6
Gohir.1Z049409 Gossypium hirsutum HOM05D005391 ORTHO05D006694 7.3e-25 118.2 129 57.4
CSS0010891 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.6e-24 117.1 136 52.9
Ca_01190_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 8.1e-24 114.8 131 55.0
HPP92_023119 Vanilla planifolia HOM05D005391 ORTHO05D006694 1.1e-23 114.4 194 43.8
Oeu040668.1 Olea europaea HOM05D005391 ORTHO05D006694 4.9e-21 105.5 180 43.3
FAN23G0903 Fragaria x ananassa HOM05D005391 ORTHO05D006694 6.4e-21 105.1 197 41.6
Pp3c7_3280 Physcomitrium patens HOM05D005391 ORTHO05D006694 8.3e-21 104.8 193 39.9
Sc04g0000550 Simmondsia chinensis HOM05D005391 ORTHO05D006694 1.1e-20 104.4 165 43.6
DCAR_021623 Daucus carota HOM05D005391 ORTHO05D006694 2.7e-19 99.8 196 37.8
Mapoly0007s0225 Marchantia polymorpha HOM05D005391 ORTHO05D006694 4.6e-19 99.0 198 36.4
VMungo1309G0665 Vigna mungo HOM05D005391 ORTHO05D006694 1.1e-17 94.4 133 51.9
SMO364G0653 Selaginella moellendorffii HOM05D005391 ORTHO05D006694 6.2e-16 88.6 186 33.9
CSS0049043 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.8e-15 87.0 67 71.6
AagrBONN_evm.TU.Sc2ySwM_369.268 Anthoceros agrestis HOM05D005391 ORTHO05D006694 5.2e-15 85.5 205 33.2
Os04g0388601 Oryza sativa ssp. japonica HOM05D005391 ORTHO05D006694 5.2e-15 85.5 175 45.1
Zm00001eb085410 Zea mays HOM05D005391 ORTHO05D006694 3.0e-10 69.7 121 46.3
SEGI_13536 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 3.6e-08 62.8 165 32.7
Hund13632 Selenicereus undatus HOM05D005391 ORTHO05D006694 7.6e-06 55.1 46 54.3


User provided reference genes

Program Settings