Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 2.3e-208 728.8 405 100.0
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 5.7e-175 617.8 375 91.5
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 5.2e-160 568.2 377 76.4
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 3.4e-159 565.5 376 76.1
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 3.4e-159 565.5 376 76.1
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 8.3e-158 560.8 382 74.1
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 6.0e-156 554.7 381 80.3
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 7.8e-156 554.3 387 81.7
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 1.1e-154 550.4 381 82.4
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 5.6e-154 548.1 391 79.3
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 6.8e-152 541.2 382 76.2
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 2.0e-151 539.7 377 76.1
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 3.4e-151 538.9 374 83.7
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 5.8e-151 538.1 388 79.6
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 4.9e-150 535.0 389 73.8
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 9.2e-149 530.8 386 78.8
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 7.8e-148 527.7 376 80.3
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 1.3e-147 526.9 384 72.9
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 1.7e-147 526.6 389 78.9
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 1.9e-146 523.1 374 79.7
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 1.9e-146 523.1 393 79.6
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 1.9e-146 523.1 379 79.9
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 1.9e-146 523.1 365 82.7
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 4.3e-146 521.9 389 77.9
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 5.6e-146 521.5 407 75.4
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 1.2e-145 520.4 389 75.8
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 1.6e-145 520.0 389 77.9
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 1.6e-145 520.0 395 77.7
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 2.1e-145 519.6 393 76.1
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 1.5e-143 513.5 395 78.0
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 2.6e-143 512.7 383 79.4
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 4.4e-143 511.9 405 76.5
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 5.8e-143 511.5 393 79.4
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 2.2e-142 509.6 381 74.5
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 3.8e-142 508.8 401 75.8
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 3.8e-142 508.8 419 63.2
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 6.4e-142 508.1 405 72.6
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 1.1e-141 507.3 386 74.9
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 9.2e-141 504.2 373 79.6
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 1.6e-140 503.4 405 72.3
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 2.3e-139 499.6 396 73.2
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 3.9e-139 498.8 411 70.1
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 3.9e-139 498.8 416 71.4
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 3.9e-139 498.8 381 75.1
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 4.3e-138 495.4 403 63.8
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 1.2e-137 493.8 415 63.6
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 3.6e-137 492.3 398 75.6
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 6.2e-137 491.5 404 71.8
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 1.4e-136 490.3 397 73.6
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 5.2e-136 488.4 408 65.0
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 6.9e-136 488.0 397 75.3
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 9.0e-136 487.6 371 70.6
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.6e-135 486.1 401 71.1
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 9.9e-135 484.2 397 75.6
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 2.9e-134 482.6 405 69.9
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 6.4e-134 481.5 406 69.5
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 1.9e-133 479.9 364 79.4
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 5.4e-133 478.4 397 70.8
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.2e-132 477.2 404 69.6
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 1.6e-132 476.9 382 72.5
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 2.1e-132 476.5 402 69.9
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 8.7e-131 471.1 387 74.7
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 5.6e-130 468.4 386 74.1
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 9.6e-130 467.6 409 68.5
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 9.6e-130 467.6 352 67.9
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 1.6e-129 466.8 372 63.7
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 2.8e-129 466.1 372 63.2
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 1.2e-127 460.7 395 66.6
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 4.5e-127 458.8 381 63.3
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 3.8e-126 455.7 402 65.4
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 8.4e-126 454.5 411 61.8
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 7.1e-125 451.4 358 77.4
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 9.3e-125 451.1 375 68.8
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 2.1e-124 449.9 401 69.8
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 3.0e-123 446.0 408 68.6
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 3.9e-123 445.7 400 69.5
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 8.7e-123 444.5 403 63.5
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 1.1e-122 444.1 409 66.7
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 1.9e-122 443.4 400 66.0
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 2.5e-122 443.0 395 65.3
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 3.3e-122 442.6 405 62.7
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 3.3e-122 442.6 405 62.7
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 3.3e-122 442.6 413 60.5
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 1.6e-121 440.3 401 69.6
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 1.6e-121 440.3 363 75.2
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 4.8e-121 438.7 407 62.9
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 4.8e-121 438.7 407 62.9
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 1.1e-120 437.6 401 69.3
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 1.1e-120 437.6 401 69.3
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 1.4e-120 437.2 405 65.7
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 9.0e-120 434.5 405 68.9
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 1.2e-119 434.1 337 72.4
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 2.6e-119 433.0 409 68.0
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 5.8e-119 431.8 405 68.6
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 6.4e-118 428.3 334 68.3
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 1.6e-116 423.7 452 62.6
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 1.3e-115 420.6 299 74.2
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 3.3e-114 416.0 338 62.4
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 3.3e-114 416.0 330 74.2
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 3.7e-113 412.5 292 80.5
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 8.2e-113 411.4 391 60.1
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 6.9e-112 408.3 373 61.7
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 4.5e-111 405.6 404 59.9
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 5.8e-111 405.2 340 68.2
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 3.8e-110 402.5 369 60.7
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 8.4e-110 401.4 385 61.0
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 8.4e-110 401.4 394 58.4
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.1e-109 401.0 394 62.4
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 1.4e-109 400.6 362 62.2
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 5.5e-109 398.7 395 55.4
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 2.7e-108 396.4 396 59.6
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 4.6e-108 395.6 396 59.3
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 6.3e-105 385.2 412 59.5
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 9.0e-104 381.3 333 58.3
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 6.7e-99 365.2 391 57.3
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 2.6e-95 353.2 347 64.6
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 9.4e-93 344.7 383 50.1
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 5.1e-91 339.0 419 48.4
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 8.2e-89 331.6 338 54.4
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 8.2e-89 331.6 378 54.5
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 4.1e-88 329.3 366 48.6
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 1.4e-85 320.9 166 89.2
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 4.2e-85 319.3 331 51.1
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 1.5e-82 310.8 324 50.6
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 1.1e-80 304.7 161 85.7
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 2.0e-79 300.4 298 52.0
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 6.5e-78 295.4 368 49.5
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 1.8e-75 287.3 278 69.1
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 4.8e-73 279.3 276 69.6
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 1.6e-71 274.2 290 64.5
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 1.7e-70 270.8 265 60.0
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 4.8e-65 252.7 131 88.5
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 5.4e-56 222.6 118 89.0
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 2.0e-55 220.7 156 75.0
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 3.8e-54 216.5 113 87.6
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 2.0e-47 194.1 113 74.3
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.5e-45 188.0 171 54.4
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 2.5e-45 187.2 315 36.2
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 1.2e-42 178.3 91 87.9
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 6.0e-39 166.0 150 62.0
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 4.6e-31 139.8 266 34.6
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 2.9e-25 120.6 123 52.8
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 2.7e-15 87.4 83 49.4
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 5.1e-14 83.2 40 92.5
unitig_61.g26223 Utricularia gibba HOM05D005199 ORTHO05D006277 2.7e-07 60.8 58 48.3
unitig_0.g1098 Utricularia gibba HOM05D005199 ORTHO05D006277 5.1e-06 56.6 71 39.4


User provided reference genes

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