Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 6.0e-157 557.4 264 100.0
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 1.9e-139 499.2 264 86.4
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 1.1e-137 493.4 270 86.7
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 2.9e-135 485.3 260 87.7
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 2.9e-135 485.3 267 84.3
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 1.4e-134 483.0 264 85.2
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 9.3e-134 480.3 262 84.4
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 1.2e-133 479.9 261 83.1
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 1.2e-133 479.9 264 81.4
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 1.2e-133 479.9 258 86.0
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 4.6e-133 478.0 268 84.0
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 6.0e-133 477.6 260 85.4
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 7.9e-133 477.2 260 85.4
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 1.3e-132 476.5 265 82.3
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.3e-132 476.5 260 85.0
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 1.3e-132 476.5 256 87.1
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 2.3e-132 475.7 261 82.8
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 2.3e-132 475.7 261 85.1
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 3.0e-132 475.3 271 83.8
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 5.1e-132 474.6 264 87.1
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 3.3e-131 471.9 253 85.4
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.6e-130 469.5 264 82.6
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 2.1e-130 469.2 260 82.7
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 3.7e-130 468.4 264 83.0
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 6.2e-130 467.6 264 80.3
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 1.1e-129 466.8 266 81.2
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.4e-129 466.5 264 82.2
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 1.4e-129 466.5 268 81.0
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 2.4e-129 465.7 260 80.8
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 3.1e-129 465.3 264 81.8
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 5.3e-129 464.5 263 81.7
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 9.0e-129 463.8 264 81.4
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 1.2e-128 463.4 263 81.4
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 1.5e-128 463.0 260 82.3
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 2.0e-128 462.6 263 81.0
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 2.6e-128 462.2 264 79.9
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 2.6e-128 462.2 264 79.9
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 1.0e-127 460.3 271 81.5
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.2e-127 459.1 264 81.8
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 2.2e-127 459.1 263 81.4
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.9e-127 458.8 265 81.1
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 3.8e-127 458.4 253 83.4
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 6.5e-127 457.6 268 80.6
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 8.4e-127 457.2 265 77.4
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.1e-126 456.8 269 79.9
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 5.5e-126 454.5 280 77.5
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 9.3e-126 453.8 272 78.3
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 9.3e-126 453.8 266 77.8
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 1.2e-125 453.4 280 77.1
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 1.6e-125 453.0 272 78.3
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.6e-125 453.0 257 81.7
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 2.1e-125 452.6 259 80.3
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 3.5e-125 451.8 272 77.9
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 3.5e-125 451.8 266 77.4
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.5e-125 451.8 280 76.8
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 4.6e-125 451.4 271 77.9
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 4.6e-125 451.4 272 78.3
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 6.1e-125 451.1 280 76.8
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 1.0e-124 450.3 265 79.6
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 3.0e-124 448.7 261 77.4
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 5.1e-124 448.0 260 80.0
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 5.1e-124 448.0 260 80.4
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 1.1e-123 446.8 262 78.2
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.9e-123 446.0 257 81.3
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 2.5e-123 445.7 272 76.8
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 2.5e-123 445.7 259 81.9
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 5.7e-123 444.5 262 78.6
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 9.7e-123 443.7 259 81.5
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.3e-122 443.4 256 80.9
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.3e-122 443.4 274 78.5
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 2.2e-122 442.6 259 79.9
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 3.7e-122 441.8 272 76.8
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 3.7e-122 441.8 263 78.3
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 4.8e-122 441.4 258 79.1
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 2.4e-121 439.1 262 79.8
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 3.1e-121 438.7 260 78.5
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 5.3e-121 438.0 268 77.2
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 9.0e-121 437.2 260 78.1
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 1.2e-120 436.8 256 78.5
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.4e-120 435.3 276 72.5
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 1.3e-119 433.3 265 75.5
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 1.7e-119 433.0 260 77.7
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 2.2e-119 432.6 260 77.3
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 5.0e-119 431.4 270 74.8
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 1.4e-118 429.9 260 77.3
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 5.5e-118 427.9 266 74.8
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 5.5e-118 427.9 261 74.3
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 1.2e-117 426.8 267 73.8
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 3.6e-117 425.2 272 74.3
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 3.6e-117 425.2 256 75.8
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 7.9e-117 424.1 236 82.6
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.4e-116 423.3 258 79.1
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 1.4e-116 423.3 266 74.4
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.8e-116 422.9 250 77.2
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 5.1e-116 421.4 264 75.8
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.2e-114 416.0 282 68.4
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 8.2e-114 414.1 250 76.0
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.1e-113 413.7 280 68.9
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.1e-113 413.7 233 80.3
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 6.9e-113 411.0 291 68.0
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 6.9e-113 411.0 256 75.4
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 9.1e-113 410.6 264 73.1
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 5.9e-112 407.9 278 69.1
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.4e-110 403.3 297 67.7
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 4.2e-110 401.7 260 75.8
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 7.2e-110 401.0 229 76.9
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 6.1e-109 397.9 270 71.5
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 2.6e-107 392.5 224 79.9
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 1.7e-106 389.8 229 74.7
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 1.8e-105 386.3 210 84.3
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.1e-105 385.6 216 81.5
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 4.1e-105 385.2 212 81.1
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 1.7e-103 379.8 222 79.7
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 2.7e-101 372.5 264 68.2
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 3.0e-100 369.0 236 69.5
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 8.8e-100 367.5 227 69.2
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 4.1e-97 358.6 243 65.0
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 4.1e-97 358.6 193 83.4
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.2e-96 357.1 218 70.6
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 7.2e-94 347.8 217 68.2
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.2e-93 347.1 250 67.6
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 2.6e-91 339.3 231 71.0
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 7.5e-91 337.8 299 56.5
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 8.5e-87 324.3 286 58.0
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 4.2e-86 322.0 164 87.2
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.6e-85 320.1 329 50.8
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 2.8e-82 309.3 181 80.1
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 5.4e-81 305.1 198 67.7
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 5.6e-78 295.0 215 56.7
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 1.0e-76 290.8 162 82.7
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 8.6e-71 271.2 157 82.2
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 3.7e-66 255.8 163 74.8
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 4.1e-65 252.3 215 60.5
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 6.6e-63 245.0 138 79.7
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 3.1e-60 236.1 202 59.4
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 2.9e-50 203.0 121 74.4
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.7e-50 202.6 120 75.8
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.4e-33 147.5 105 69.5
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 3.4e-27 126.3 72 81.9
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 7.6e-27 125.2 80 72.5
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 4.9e-26 122.5 82 74.4
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 4.6e-24 115.9 66 72.7
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 6.0e-24 115.5 66 77.3
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 2.8e-21 106.7 65 70.8
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 2.8e-21 106.7 91 59.3
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 5.8e-19 99.0 71 70.4
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 4.2e-17 92.8 52 78.8
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 9.3e-17 91.7 86 62.8
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 3.5e-16 89.7 56 80.4
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 1.3e-15 87.8 84 52.4
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 1.5e-14 84.3 43 79.1
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 4.5e-11 72.8 56 60.7
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 4.5e-11 72.8 70 54.3
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 1.0e-10 71.6 56 62.5
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 3.2e-09 66.6 67 50.7


User provided reference genes

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