Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 1.0e-102 376.7 189 100.0
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 8.3e-76 287.3 191 75.9
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 5.9e-74 281.2 191 74.9
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 4.9e-68 261.5 189 68.8
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 6.4e-68 261.2 189 68.3
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 3.2e-67 258.8 189 68.3
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 7.8e-66 254.2 254 55.9
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 1.5e-64 250.0 190 67.9
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.9e-64 249.6 189 66.7
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 3.3e-64 248.8 189 67.2
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.3e-64 248.4 189 66.7
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 7.3e-64 247.7 189 66.7
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 9.5e-64 247.3 189 65.6
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 9.5e-64 247.3 190 66.8
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 9.5e-64 247.3 191 64.9
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 1.2e-63 246.9 189 66.1
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 2.8e-63 245.7 190 66.8
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 1.4e-62 243.4 190 64.2
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.4e-62 243.4 189 65.6
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 1.8e-62 243.0 190 64.2
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.1e-62 242.3 190 64.2
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 3.1e-62 242.3 189 64.0
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 3.1e-62 242.3 278 51.1
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 1.2e-61 240.4 188 64.9
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 1.5e-61 240.0 190 64.7
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.5e-61 240.0 192 66.7
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 1.5e-61 240.0 191 66.0
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 1.5e-61 240.0 190 67.9
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 5.8e-61 238.0 189 63.5
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 5.8e-61 238.0 192 66.1
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 9.8e-61 237.3 190 64.7
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.7e-60 235.3 191 65.4
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 4.9e-60 235.0 185 63.8
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 6.4e-60 234.6 192 65.1
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 8.3e-60 234.2 225 56.0
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 1.1e-59 233.8 186 64.0
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.9e-59 233.0 189 61.9
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 3.2e-59 232.3 195 62.6
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 3.2e-59 232.3 189 63.5
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 3.2e-59 232.3 189 63.5
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 4.1e-59 231.9 196 62.2
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.1e-59 231.9 191 65.4
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 1.6e-58 229.9 189 63.5
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 1.6e-58 229.9 189 61.9
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 2.1e-58 229.6 192 64.6
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 6.0e-58 228.0 196 61.2
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 1.0e-57 227.3 191 60.7
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.0e-57 227.3 189 62.4
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 3.0e-57 225.7 185 58.9
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 3.9e-57 225.3 190 60.0
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 6.6e-57 224.6 230 53.9
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 8.6e-57 224.2 189 60.3
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.1e-56 223.8 190 59.5
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 1.1e-56 223.8 178 62.4
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 1.5e-56 223.4 189 59.8
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 2.5e-56 222.6 190 60.5
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 2.5e-56 222.6 187 62.0
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 3.3e-56 222.2 185 58.9
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 3.3e-56 222.2 190 62.6
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 4.3e-56 221.9 189 60.8
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 5.6e-56 221.5 189 59.8
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 7.3e-56 221.1 189 59.8
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 9.5e-56 220.7 189 61.9
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 1.6e-55 219.9 185 57.8
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 2.1e-55 219.5 173 62.4
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 4.7e-55 218.4 185 57.8
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 4.7e-55 218.4 190 57.9
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 8.1e-55 217.6 185 57.8
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 8.1e-55 217.6 189 59.3
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 8.1e-55 217.6 185 57.8
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 1.1e-54 217.2 197 58.4
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 1.1e-54 217.2 190 61.1
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 1.4e-54 216.9 189 59.8
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 2.3e-54 216.1 185 56.8
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 2.3e-54 216.1 193 58.0
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 2.3e-54 216.1 189 59.8
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 4.0e-54 215.3 202 56.9
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 4.0e-54 215.3 189 59.3
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 4.0e-54 215.3 189 56.6
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 4.0e-54 215.3 170 65.3
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 4.0e-54 215.3 188 58.5
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 8.9e-54 214.2 189 57.7
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 8.9e-54 214.2 189 59.3
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 8.9e-54 214.2 189 59.3
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 8.9e-54 214.2 148 70.9
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.2e-53 213.8 189 57.7
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 1.5e-53 213.4 195 55.4
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 2.0e-53 213.0 190 59.5
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 2.0e-53 213.0 186 55.9
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 2.6e-53 212.6 192 59.4
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 4.4e-53 211.8 163 65.0
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 4.4e-53 211.8 179 59.2
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 7.5e-53 211.1 185 57.3
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 7.5e-53 211.1 160 63.1
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 7.5e-53 211.1 129 73.6
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 9.9e-53 210.7 189 57.1
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.3e-52 210.3 186 59.1
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 1.7e-52 209.9 203 56.2
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.2e-52 209.5 189 56.6
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 4.9e-52 208.4 187 60.4
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 1.1e-51 207.2 194 56.2
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 1.4e-51 206.8 189 56.6
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 2.4e-51 206.1 186 55.4
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 2.4e-51 206.1 203 54.7
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 2.4e-51 206.1 129 72.1
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 7.1e-51 204.5 192 55.2
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 7.1e-51 204.5 183 59.0
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 2.1e-50 203.0 189 55.6
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 3.5e-50 202.2 140 64.3
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 7.8e-50 201.1 190 56.3
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 1.7e-49 199.9 115 76.5
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 1.7e-49 199.9 129 71.3
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 8.6e-49 197.6 154 65.6
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 8.6e-49 197.6 191 56.5
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.1e-48 197.2 189 56.6
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 1.9e-48 196.4 129 70.5
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 3.3e-48 195.7 185 53.0
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 2.1e-47 193.0 229 49.3
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.8e-47 192.6 164 64.0
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.5e-45 186.8 166 59.6
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 1.3e-44 183.7 130 65.4
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 2.2e-44 183.0 114 71.1
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 2.7e-42 176.0 135 63.7
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 8.1e-39 164.5 123 60.2
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 4.4e-37 158.7 124 57.3
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 2.9e-36 156.0 125 54.4
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.6e-34 150.2 87 74.7
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 8.1e-31 137.9 105 64.8
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 4.0e-30 135.6 150 50.7
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 1.2e-29 134.0 142 52.1
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 1.7e-28 130.2 111 54.1
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 8.4e-28 127.9 76 71.1
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 1.9e-27 126.7 72 73.6
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.4e-27 126.3 134 57.5
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.2e-27 125.9 86 66.3
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 7.9e-26 121.3 72 70.8
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 7.4e-24 114.8 65 73.8
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 3.1e-22 109.4 117 42.7
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.4e-19 100.5 118 52.5
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 3.2e-19 99.4 102 43.1
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 1.5e-16 90.5 59 67.8
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.5e-16 89.7 93 57.0
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 3.0e-09 66.2 35 74.3
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 4.1e-06 55.8 52 48.1


User provided reference genes

Program Settings